Wall clock time and date at job start Sun Mar 29 2020 22:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.27565 * 126.41530 * 2 1 4 4 N 1.39143 * 113.16360 * 180.22079 * 3 2 1 5 5 C 1.46506 * 124.43668 * 179.76596 * 4 3 2 6 6 H 1.09008 * 109.46742 * 179.70156 * 5 4 3 7 7 C 1.52996 * 109.46848 * 59.70437 * 5 4 3 8 8 C 1.50695 * 109.47462 * 299.70125 * 5 4 3 9 9 H 1.08002 * 119.99695 * 0.02562 * 8 5 4 10 10 C 1.37872 * 120.00080 * 180.02562 * 8 5 4 11 11 N 1.31515 * 120.00353 * 359.97438 * 10 8 5 12 12 Si 1.86802 * 119.99966 * 179.97438 * 10 8 5 13 13 H 1.48501 * 109.47266 * 270.00091 * 12 10 8 14 14 H 1.48505 * 109.47119 * 29.99727 * 12 10 8 15 15 H 1.48500 * 109.47338 * 149.99554 * 12 10 8 16 16 C 1.34951 * 111.12392 * 359.50205 * 4 3 2 17 17 O 1.21303 * 127.50210 * 180.24060 * 16 4 3 18 18 C 1.51432 * 126.41713 * 179.70356 * 2 1 3 19 19 H 1.09000 * 110.61018 * 298.47977 * 18 2 1 20 20 C 1.53004 * 110.60686 * 61.44862 * 18 2 1 21 21 C 1.53003 * 109.47196 * 58.58058 * 20 18 2 22 22 C 1.53008 * 109.46868 * 178.57526 * 20 18 2 23 23 H 1.09005 * 109.47035 * 275.38619 * 1 2 3 24 24 H 1.08993 * 109.47022 * 35.39068 * 1 2 3 25 25 H 1.09002 * 109.46888 * 155.38945 * 1 2 3 26 26 H 1.09005 * 109.46723 * 179.97438 * 7 5 4 27 27 H 1.09000 * 109.46903 * 299.99505 * 7 5 4 28 28 H 1.08997 * 109.47709 * 59.99903 * 7 5 4 29 29 H 0.97001 * 120.00307 * 180.02562 * 11 10 8 30 30 H 1.08994 * 109.47420 * 298.57738 * 20 18 2 31 31 H 1.09002 * 109.46785 * 299.99833 * 21 20 18 32 32 H 1.09003 * 109.46937 * 59.99426 * 21 20 18 33 33 H 1.08995 * 109.47267 * 179.97438 * 21 20 18 34 34 H 1.09003 * 109.46825 * 54.16906 * 22 20 18 35 35 H 1.09005 * 109.46683 * 174.16771 * 22 20 18 36 36 H 1.08997 * 109.47211 * 294.16741 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6187 0.7076 -0.0049 5 6 4.7021 1.6938 -0.0110 6 1 5.6626 1.1784 -0.0086 7 6 4.5944 2.5773 1.2335 8 6 4.5948 2.5505 -1.2461 9 1 3.7989 2.3779 -1.9554 10 6 5.5126 3.5546 -1.4705 11 7 6.4815 3.7651 -0.6065 12 14 5.3799 4.6160 -3.0019 13 1 6.1604 3.9963 -4.1029 14 1 3.9552 4.7259 -3.4062 15 1 5.9186 5.9697 -2.7142 16 6 3.8036 -0.6292 0.0024 17 8 4.8580 -1.2288 0.0048 18 6 2.4061 -1.2186 0.0063 19 1 2.2423 -1.8115 0.9062 20 6 2.1749 -2.0648 -1.2473 21 6 2.4484 -1.2179 -2.4919 22 6 3.1198 -3.2681 -1.2317 23 1 -0.3633 0.0965 1.0232 24 1 -0.3633 0.8377 -0.5951 25 1 -0.3633 -0.9343 -0.4280 26 1 5.4007 3.3108 1.2292 27 1 3.6339 3.0927 1.2311 28 1 4.6720 1.9577 2.1269 29 1 7.1270 4.4717 -0.7642 30 1 1.1425 -2.4137 -1.2649 31 1 1.7753 -0.3606 -2.5030 32 1 3.4809 -0.8689 -2.4742 33 1 2.2842 -1.8208 -3.3849 34 1 2.9975 -3.8140 -0.2961 35 1 2.8852 -3.9252 -2.0692 36 1 4.1499 -2.9224 -1.3186 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899349581.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:13 Heat of formation + Delta-G solvation = -18.419839 kcal Electronic energy + Delta-G solvation = -17891.243105 eV Core-core repulsion = 15182.534582 eV Total energy + Delta-G solvation = -2708.708524 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.40594 -38.40319 -37.25421 -35.70420 -33.70927 -31.52782 -29.28859 -28.42348 -28.00899 -27.38113 -23.73982 -22.49578 -20.82431 -20.19051 -18.56793 -17.63434 -17.31337 -16.50687 -16.10793 -15.80857 -15.02103 -14.92295 -14.58085 -14.25871 -14.04597 -13.77525 -13.51874 -13.25527 -13.15719 -13.09560 -12.99806 -12.82776 -12.53545 -12.33890 -12.24284 -12.21368 -12.07261 -11.88625 -11.28160 -11.16295 -10.63935 -10.39639 -9.38590 -8.23763 -6.39599 0.81167 1.35767 1.36998 1.47964 1.74190 1.86917 2.36065 2.95734 3.05833 3.21463 3.70016 3.90009 4.15121 4.27718 4.51498 4.56693 4.63076 4.74445 4.76694 4.86321 4.86698 4.90295 4.96953 5.00001 5.09678 5.13749 5.23417 5.28418 5.44777 5.48211 5.59382 5.70904 5.87710 6.04934 6.62264 6.92619 7.16092 7.31446 8.81338 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.026366 B = 0.007980 C = 0.007973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.709691 B = 3507.757281 C = 3511.104529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.089 3.911 3 N -0.261 5.261 4 N -0.455 5.455 5 C 0.288 3.712 6 H 0.015 0.985 7 C -0.127 4.127 8 C -0.532 4.532 9 H 0.051 0.949 10 C 0.016 3.984 11 N -0.917 5.917 12 Si 0.969 3.031 13 H -0.277 1.277 14 H -0.268 1.268 15 H -0.273 1.273 16 C 0.474 3.526 17 O -0.559 6.559 18 C -0.131 4.131 19 H 0.153 0.847 20 C -0.053 4.053 21 C -0.152 4.152 22 C -0.151 4.151 23 H 0.104 0.896 24 H 0.082 0.918 25 H 0.118 0.882 26 H 0.077 0.923 27 H 0.042 0.958 28 H 0.018 0.982 29 H 0.268 0.732 30 H 0.137 0.863 31 H 0.055 0.945 32 H 0.006 0.994 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.202 -10.337 -0.301 18.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 N -0.067 5.067 4 N -0.272 5.272 5 C 0.188 3.812 6 H 0.033 0.967 7 C -0.185 4.185 8 C -0.570 4.570 9 H 0.069 0.931 10 C -0.184 4.184 11 N -0.556 5.556 12 Si 0.793 3.207 13 H -0.203 1.203 14 H -0.192 1.192 15 H -0.198 1.198 16 C 0.263 3.737 17 O -0.438 6.438 18 C -0.154 4.154 19 H 0.170 0.830 20 C -0.072 4.072 21 C -0.209 4.209 22 C -0.208 4.208 23 H 0.122 0.878 24 H 0.101 0.899 25 H 0.137 0.863 26 H 0.095 0.905 27 H 0.061 0.939 28 H 0.037 0.963 29 H 0.078 0.922 30 H 0.155 0.845 31 H 0.074 0.926 32 H 0.026 0.974 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -14.218 -9.403 -0.254 17.048 hybrid contribution 1.166 0.150 -0.520 1.285 sum -13.052 -9.253 -0.774 16.018 Atomic orbital electron populations 1.20560 0.81071 1.05832 1.05275 1.26189 0.99086 0.89117 0.95942 1.74607 0.89149 1.28583 1.14342 1.50328 1.03619 1.06490 1.66738 1.18589 0.81679 0.85231 0.95712 0.96720 1.21819 1.01917 1.00005 0.94808 1.21353 1.12934 1.16563 1.06176 0.93079 1.25740 0.94393 0.98167 1.00073 1.69983 1.15770 1.32909 1.36893 0.85397 0.78559 0.77947 0.78798 1.20267 1.19208 1.19800 1.22166 0.92525 0.83451 0.75574 1.90628 1.33298 1.67070 1.52761 1.22064 0.90263 0.98247 1.04842 0.82993 1.20915 1.03207 0.93702 0.89414 1.21920 0.99399 1.00288 0.99285 1.21899 0.98561 0.97147 1.03202 0.87764 0.89930 0.86319 0.90462 0.93877 0.96257 0.92232 0.84508 0.92626 0.97438 0.89669 0.91171 0.90104 0.95404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.03 10.49 71.24 0.75 -0.28 16 2 C 0.09 2.52 5.68 46.83 0.27 2.79 16 3 N -0.26 -10.59 11.77 -40.85 -0.48 -11.07 16 4 N -0.45 -22.07 3.23 -444.71 -1.44 -23.50 16 5 C 0.29 16.34 2.98 44.24 0.13 16.47 16 6 H 0.02 0.97 7.68 -2.38 -0.02 0.95 16 7 C -0.13 -6.73 9.18 71.98 0.66 -6.07 16 8 C -0.53 -31.30 8.72 25.60 0.22 -31.07 16 9 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 10 C 0.02 0.91 5.30 84.65 0.45 1.36 16 11 N -0.92 -54.21 11.32 21.45 0.24 -53.97 16 12 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 14 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 15 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 16 C 0.47 21.18 6.15 87.94 0.54 21.72 16 17 O -0.56 -28.88 15.79 -3.10 -0.05 -28.93 16 18 C -0.13 -3.82 2.92 -11.74 -0.03 -3.86 16 19 H 0.15 3.54 8.14 -2.39 -0.02 3.52 16 20 C -0.05 -1.24 2.79 -10.79 -0.03 -1.27 16 21 C -0.15 -4.41 8.64 71.98 0.62 -3.78 16 22 C -0.15 -3.68 8.81 71.98 0.63 -3.04 16 23 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 24 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.12 0.88 7.64 -2.39 -0.02 0.87 16 26 H 0.08 4.37 6.07 -2.38 -0.01 4.35 16 27 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 30 H 0.14 1.81 7.65 -2.39 -0.02 1.80 16 31 H 0.05 1.62 7.24 -2.39 -0.02 1.60 16 32 H 0.01 0.26 7.15 -2.39 -0.02 0.24 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.03 0.93 6.44 -2.39 -0.02 0.91 16 Total: -1.00 -75.99 295.78 5.57 -70.42 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 1.05 Total: 7.00 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 4.21 Total: -7.03 kcal Atomic # 7 Polarization: -86.87 SS G_CDS: -1.67 Total: -88.54 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.05 Total: -28.93 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -75.99 5.57 -70.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899349581.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.999 kcal (2) G-P(sol) polarization free energy of solvation -75.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds