Wall clock time and date at job start Sun Mar 29 2020 22:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.27566 * 126.41380 * 2 1 4 4 N 1.39150 * 113.16330 * 180.02562 * 3 2 1 5 5 C 1.46501 * 124.43870 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46997 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.46930 * 300.01685 * 5 4 3 8 8 C 1.50704 * 109.47526 * 60.01835 * 5 4 3 9 9 H 1.08001 * 119.99326 * 0.02562 * 8 5 4 10 10 C 1.37871 * 120.00120 * 180.02562 * 8 5 4 11 11 N 1.31518 * 119.99990 * 0.02562 * 10 8 5 12 12 Si 1.86802 * 119.99913 * 179.97438 * 10 8 5 13 13 H 1.48499 * 109.46993 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46912 * 120.00325 * 12 10 8 15 15 H 1.48495 * 109.47380 * 240.00068 * 12 10 8 16 16 C 1.34952 * 111.12151 * 0.25643 * 4 3 2 17 17 O 1.21306 * 127.49897 * 179.70951 * 16 4 3 18 18 C 1.51434 * 126.41678 * 180.02562 * 2 1 3 19 19 H 1.08998 * 110.61338 * 298.47942 * 18 2 1 20 20 C 1.53002 * 110.60885 * 61.29828 * 18 2 1 21 21 C 1.52997 * 109.47499 * 65.43803 * 20 18 2 22 22 C 1.53002 * 109.47073 * 185.44415 * 20 18 2 23 23 H 1.09001 * 109.47561 * 354.49863 * 1 2 3 24 24 H 1.08996 * 109.47089 * 114.50516 * 1 2 3 25 25 H 1.09004 * 109.46802 * 234.50549 * 1 2 3 26 26 H 1.09000 * 109.47334 * 300.00282 * 7 5 4 27 27 H 1.09001 * 109.46775 * 60.00483 * 7 5 4 28 28 H 1.09004 * 109.46948 * 179.97438 * 7 5 4 29 29 H 0.97004 * 119.99435 * 180.02562 * 11 10 8 30 30 H 1.09004 * 109.46767 * 305.43960 * 20 18 2 31 31 H 1.09004 * 109.46983 * 60.00289 * 21 20 18 32 32 H 1.08994 * 109.47571 * 180.02562 * 21 20 18 33 33 H 1.08998 * 109.46923 * 300.00701 * 21 20 18 34 34 H 1.09006 * 109.46700 * 174.49001 * 22 20 18 35 35 H 1.09003 * 109.46747 * 294.48430 * 22 20 18 36 36 H 1.08994 * 109.47571 * 54.48725 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2642 1.0266 0.0000 4 7 3.6187 0.7076 -0.0006 5 6 4.7021 1.6938 -0.0012 6 1 5.6625 1.1784 -0.0021 7 6 4.5929 2.5705 -1.2504 8 6 4.5963 2.5573 1.2294 9 1 3.8017 2.3881 1.9410 10 6 5.5137 3.5632 1.4467 11 7 6.4810 3.7696 0.5797 12 14 5.3821 4.6340 2.9717 13 1 4.2148 4.2011 3.7811 14 1 6.6211 4.4997 3.7792 15 1 5.2061 6.0519 2.5673 16 6 3.8035 -0.6291 -0.0066 17 8 4.8580 -1.2288 -0.0136 18 6 2.4060 -1.2186 -0.0005 19 1 2.2423 -1.8166 0.8959 20 6 2.1722 -2.0597 -1.2571 21 6 2.6056 -1.2652 -2.4907 22 6 2.9910 -3.3491 -1.1673 23 1 -0.3634 1.0229 0.0985 24 1 -0.3633 -0.4262 -0.9351 25 1 -0.3633 -0.5967 0.8367 26 1 4.6694 1.9460 -2.1405 27 1 3.6324 3.0859 -1.2496 28 1 5.3987 3.3046 -1.2507 29 1 7.1267 4.4771 0.7329 30 1 1.1135 -2.3065 -1.3373 31 1 3.6643 -1.0184 -2.4104 32 1 2.4386 -1.8642 -3.3858 33 1 2.0223 -0.3466 -2.5545 34 1 2.7503 -3.9920 -2.0140 35 1 4.0536 -3.1067 -1.1857 36 1 2.7525 -3.8671 -0.2384 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899349583.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:17 Heat of formation + Delta-G solvation = -19.147616 kcal Electronic energy + Delta-G solvation = -17826.359535 eV Core-core repulsion = 15117.619452 eV Total energy + Delta-G solvation = -2708.740083 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.41050 -38.40247 -37.24865 -35.71675 -33.73676 -31.53235 -29.28747 -28.37502 -28.06734 -27.39212 -23.75140 -22.48557 -20.86491 -20.17727 -18.55073 -17.65640 -17.31851 -16.50985 -16.13465 -15.80412 -15.06510 -14.92198 -14.57300 -14.28468 -13.99695 -13.76181 -13.52699 -13.24369 -13.15677 -13.11030 -12.99620 -12.81272 -12.52693 -12.38892 -12.31781 -12.14782 -12.06762 -11.88195 -11.32978 -11.16143 -10.64712 -10.40468 -9.39738 -8.24686 -6.41101 0.80683 1.36362 1.36770 1.49519 1.75858 1.84184 2.36107 2.95062 3.04895 3.21214 3.69188 3.89726 4.13841 4.26571 4.52547 4.56079 4.63244 4.75244 4.75795 4.85157 4.85603 4.89846 4.96776 4.99676 5.08017 5.13906 5.22867 5.27462 5.44048 5.47854 5.58482 5.69845 5.87103 6.03974 6.61382 6.91906 7.15419 7.30509 8.80635 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.032463 B = 0.007531 C = 0.006995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.320437 B = 3717.304333 C = 4002.041173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.089 3.911 3 N -0.260 5.260 4 N -0.455 5.455 5 C 0.288 3.712 6 H 0.015 0.985 7 C -0.125 4.125 8 C -0.537 4.537 9 H 0.052 0.948 10 C 0.016 3.984 11 N -0.917 5.917 12 Si 0.972 3.028 13 H -0.271 1.271 14 H -0.277 1.277 15 H -0.270 1.270 16 C 0.476 3.524 17 O -0.560 6.560 18 C -0.132 4.132 19 H 0.147 0.853 20 C -0.053 4.053 21 C -0.152 4.152 22 C -0.150 4.150 23 H 0.078 0.922 24 H 0.115 0.885 25 H 0.113 0.887 26 H 0.017 0.983 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.269 0.731 30 H 0.135 0.865 31 H 0.010 0.990 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.028 0.972 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.170 -10.304 -3.280 18.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.104 4.104 3 N -0.066 5.066 4 N -0.272 5.272 5 C 0.188 3.812 6 H 0.033 0.967 7 C -0.183 4.183 8 C -0.575 4.575 9 H 0.070 0.930 10 C -0.184 4.184 11 N -0.555 5.555 12 Si 0.796 3.204 13 H -0.195 1.195 14 H -0.203 1.203 15 H -0.195 1.195 16 C 0.265 3.735 17 O -0.439 6.439 18 C -0.155 4.155 19 H 0.164 0.836 20 C -0.072 4.072 21 C -0.210 4.210 22 C -0.208 4.208 23 H 0.097 0.903 24 H 0.133 0.867 25 H 0.131 0.869 26 H 0.036 0.964 27 H 0.061 0.939 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.153 0.847 31 H 0.030 0.970 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.048 0.952 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.188 -9.374 -3.319 17.326 hybrid contribution 1.155 0.121 0.749 1.382 sum -13.033 -9.254 -2.570 16.189 Atomic orbital electron populations 1.20567 0.81035 1.05104 1.06081 1.26209 0.99113 0.89094 0.96014 1.74629 0.89136 1.28567 1.14278 1.50328 1.03634 1.06481 1.66765 1.18587 0.81676 0.85230 0.95685 0.96713 1.21796 1.01852 0.99916 0.94744 1.21427 1.13149 1.16474 1.06456 0.93021 1.25761 0.94302 0.98182 1.00112 1.69997 1.15833 1.32850 1.36854 0.85300 0.78031 0.78435 0.78612 1.19525 1.20277 1.19478 1.22140 0.92490 0.83446 0.75474 1.90631 1.33277 1.67120 1.52853 1.22067 0.90289 0.98259 1.04886 0.83588 1.20913 1.03474 0.93534 0.89287 1.21934 0.99087 1.00616 0.99334 1.21900 0.99224 0.96353 1.03289 0.90304 0.86660 0.86876 0.96405 0.93949 0.90491 0.92191 0.84719 0.97026 0.89360 0.92880 0.89943 0.95249 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.45 71.24 0.74 -0.30 16 2 C 0.09 2.51 6.01 46.83 0.28 2.79 16 3 N -0.26 -10.61 11.77 -40.85 -0.48 -11.09 16 4 N -0.46 -22.17 3.23 -444.70 -1.44 -23.61 16 5 C 0.29 16.41 2.98 44.25 0.13 16.54 16 6 H 0.02 0.98 7.68 -2.39 -0.02 0.96 16 7 C -0.12 -6.62 9.18 71.98 0.66 -5.96 16 8 C -0.54 -31.74 8.72 25.60 0.22 -31.51 16 9 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 10 C 0.02 0.92 5.30 84.65 0.45 1.37 16 11 N -0.92 -54.21 11.32 21.45 0.24 -53.97 16 12 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 13 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 14 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 15 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 16 C 0.48 21.36 5.91 87.94 0.52 21.88 16 17 O -0.56 -29.09 16.13 -3.11 -0.05 -29.14 16 18 C -0.13 -3.88 2.85 -11.74 -0.03 -3.92 16 19 H 0.15 3.63 8.14 -2.39 -0.02 3.61 16 20 C -0.05 -1.17 2.73 -10.79 -0.03 -1.20 16 21 C -0.15 -4.08 8.61 71.98 0.62 -3.46 16 22 C -0.15 -3.40 8.97 71.98 0.65 -2.76 16 23 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 26 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.08 4.36 6.07 -2.38 -0.01 4.35 16 29 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 30 H 0.14 1.72 8.10 -2.39 -0.02 1.70 16 31 H 0.01 0.39 6.99 -2.39 -0.02 0.37 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.80 16 33 H 0.05 1.44 7.45 -2.39 -0.02 1.42 16 34 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.03 0.91 6.72 -2.39 -0.02 0.89 16 36 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -76.20 297.43 5.56 -70.64 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 1.05 Total: 6.61 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 4.21 Total: -6.52 kcal Atomic # 7 Polarization: -86.99 SS G_CDS: -1.67 Total: -88.67 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.05 Total: -29.14 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -76.20 5.56 -70.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899349583.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.489 kcal (2) G-P(sol) polarization free energy of solvation -76.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds