Wall clock time and date at job start Sun Mar 29 2020 22:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.27568 * 126.42091 * 2 1 4 4 N 1.39147 * 113.17198 * 180.26076 * 3 2 1 5 5 C 1.46498 * 124.44353 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47087 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47076 * 299.99941 * 5 4 3 8 8 C 1.50695 * 109.46840 * 59.99980 * 5 4 3 9 9 H 1.08004 * 120.00459 * 0.02562 * 8 5 4 10 10 C 1.37881 * 119.99981 * 180.02562 * 8 5 4 11 11 N 1.31515 * 119.99927 * 359.97438 * 10 8 5 12 12 Si 1.86803 * 120.00078 * 179.97438 * 10 8 5 13 13 H 1.48498 * 109.47206 * 60.00094 * 12 10 8 14 14 H 1.48501 * 109.46809 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47208 * 299.99867 * 12 10 8 16 16 C 1.34963 * 111.11747 * 359.97438 * 4 3 2 17 17 O 1.21302 * 127.49650 * 180.02562 * 16 4 3 18 18 C 1.51446 * 126.41759 * 180.30337 * 2 1 3 19 19 H 1.08999 * 110.60463 * 61.22156 * 18 2 1 20 20 C 1.53000 * 110.60684 * 298.25830 * 18 2 1 21 21 C 1.52995 * 109.47354 * 59.99536 * 20 18 2 22 22 C 1.53001 * 109.47050 * 179.97438 * 20 18 2 23 23 H 1.08996 * 109.47456 * 269.69286 * 1 2 3 24 24 H 1.09005 * 109.46621 * 29.69541 * 1 2 3 25 25 H 1.09002 * 109.47109 * 149.69090 * 1 2 3 26 26 H 1.09000 * 109.46974 * 299.99899 * 7 5 4 27 27 H 1.09002 * 109.47414 * 59.99891 * 7 5 4 28 28 H 1.09003 * 109.47363 * 179.97438 * 7 5 4 29 29 H 0.96995 * 120.00109 * 180.02562 * 11 10 8 30 30 H 1.09006 * 109.47044 * 299.99817 * 20 18 2 31 31 H 1.09003 * 109.47049 * 59.99676 * 21 20 18 32 32 H 1.08998 * 109.47660 * 180.02562 * 21 20 18 33 33 H 1.08998 * 109.47636 * 300.00034 * 21 20 18 34 34 H 1.08995 * 109.46825 * 299.99621 * 22 20 18 35 35 H 1.08995 * 109.47156 * 59.99643 * 22 20 18 36 36 H 1.09002 * 109.46812 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2643 1.0265 0.0000 4 7 3.6188 0.7076 -0.0058 5 6 4.7022 1.6937 -0.0077 6 1 5.6626 1.1783 -0.0120 7 6 4.5892 2.5732 -1.2545 8 6 4.6001 2.5544 1.2251 9 1 3.8077 2.3836 1.9389 10 6 5.5183 3.5599 1.4419 11 7 6.4835 3.7675 0.5731 12 14 5.3913 4.6272 2.9697 13 1 5.5011 3.7740 4.1802 14 1 6.4896 5.6267 2.9679 15 1 4.0827 5.3290 2.9759 16 6 3.8035 -0.6293 -0.0095 17 8 4.8579 -1.2290 -0.0144 18 6 2.4060 -1.2187 -0.0065 19 1 2.2385 -1.8142 -0.9039 20 6 2.1801 -2.0612 1.2505 21 6 0.7219 -2.5213 1.3008 22 6 3.0993 -3.2838 1.2170 23 1 -0.3634 -0.0055 1.0276 24 1 -0.3633 0.8928 -0.5091 25 1 -0.3633 -0.8872 -0.5186 26 1 4.6630 1.9506 -2.1461 27 1 3.6287 3.0886 -1.2498 28 1 5.3950 3.3072 -1.2557 29 1 7.1296 4.4746 0.7258 30 1 2.4029 -1.4627 2.1340 31 1 0.4990 -3.1197 0.4174 32 1 0.5607 -3.1212 2.1965 33 1 0.0666 -1.6506 1.3245 34 1 2.8761 -3.8821 0.3337 35 1 4.1383 -2.9563 1.1810 36 1 2.9387 -3.8838 2.1128 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899349584.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:20 Heat of formation + Delta-G solvation = 6.137036 kcal Electronic energy + Delta-G solvation = -17685.573653 eV Core-core repulsion = 14977.929995 eV Total energy + Delta-G solvation = -2707.643658 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.84966 -36.81682 -35.92551 -34.03564 -31.98182 -30.11088 -27.87121 -27.47818 -26.50484 -25.22680 -21.78741 -20.82513 -19.98013 -18.63693 -16.78248 -15.81444 -15.55719 -15.17588 -14.69047 -14.16435 -13.82388 -13.31249 -13.16200 -12.85517 -12.58586 -12.40474 -12.26565 -12.03487 -11.82556 -11.67945 -11.27035 -11.13002 -10.89201 -10.81194 -10.71533 -10.53699 -10.35182 -10.21248 -9.79139 -9.23097 -8.85989 -8.48697 -7.70967 -6.10992 -4.17925 2.14274 3.27796 3.29200 3.32897 3.39074 3.41032 4.29184 4.38450 4.45382 4.85777 5.00397 5.20418 5.31897 5.40119 5.50039 5.61868 5.66196 5.69230 5.78405 5.90052 5.93128 6.14382 6.18552 6.35693 6.45271 6.57242 6.74626 6.88692 6.95944 7.20963 7.55368 7.71556 7.94141 8.10872 8.55205 8.64530 8.88918 9.47238 10.94813 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.027988 B = 0.007391 C = 0.007199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.176921 B = 3787.508672 C = 3888.232772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.045 3.955 3 N -0.201 5.201 4 N -0.435 5.435 5 C 0.283 3.717 6 H 0.064 0.936 7 C -0.145 4.145 8 C -0.519 4.519 9 H 0.062 0.938 10 C 0.064 3.936 11 N -0.892 5.892 12 Si 0.904 3.096 13 H -0.277 1.277 14 H -0.285 1.285 15 H -0.275 1.275 16 C 0.491 3.509 17 O -0.511 6.511 18 C -0.135 4.135 19 H 0.120 0.880 20 C -0.064 4.064 21 C -0.157 4.157 22 C -0.154 4.154 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.009 0.991 27 H 0.040 0.960 28 H 0.097 0.903 29 H 0.265 0.735 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.257 -9.484 -0.664 15.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.149 4.149 3 N -0.008 5.008 4 N -0.254 5.254 5 C 0.186 3.814 6 H 0.082 0.918 7 C -0.204 4.204 8 C -0.558 4.558 9 H 0.080 0.920 10 C -0.138 4.138 11 N -0.530 5.530 12 Si 0.731 3.269 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.201 1.201 16 C 0.278 3.722 17 O -0.386 6.386 18 C -0.159 4.159 19 H 0.138 0.862 20 C -0.083 4.083 21 C -0.214 4.214 22 C -0.211 4.211 23 H 0.101 0.899 24 H 0.096 0.904 25 H 0.098 0.902 26 H 0.029 0.971 27 H 0.060 0.940 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.234 -8.556 -0.709 14.139 hybrid contribution 0.161 -0.138 0.746 0.776 sum -11.073 -8.694 0.037 14.079 Atomic orbital electron populations 1.20329 0.85956 1.03381 1.02994 1.25054 0.96969 0.90520 1.02320 1.74545 0.90722 1.26693 1.08839 1.50573 1.02548 1.06568 1.65735 1.19105 0.81755 0.85022 0.95564 0.91809 1.22063 1.02857 1.00641 0.94829 1.21205 1.13170 1.15759 1.05669 0.92008 1.24890 0.94880 0.97026 0.97041 1.69854 1.15394 1.32426 1.35321 0.86459 0.77724 0.79888 0.82797 1.20234 1.21071 1.20059 1.21214 0.90537 0.83749 0.76749 1.90670 1.31025 1.66391 1.50512 1.21862 0.94271 0.97626 1.02118 0.86234 1.20711 0.96384 0.95980 0.95271 1.22158 0.95549 1.01924 1.01761 1.21932 1.01267 0.96708 1.01208 0.89948 0.90411 0.90248 0.97141 0.94043 0.88440 0.92470 0.90864 0.92502 0.92550 0.91039 0.92767 0.90782 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 8.50 36.00 0.31 -0.39 16 2 C 0.04 0.70 6.85 -78.73 -0.54 0.16 16 3 N -0.20 -4.17 11.77 35.53 0.42 -3.75 16 4 N -0.44 -10.30 3.23 -54.53 -0.18 -10.48 16 5 C 0.28 7.62 2.98 -69.09 -0.21 7.42 16 6 H 0.06 1.89 7.68 -51.93 -0.40 1.50 16 7 C -0.15 -3.69 9.18 37.16 0.34 -3.34 16 8 C -0.52 -14.74 8.72 -34.44 -0.30 -15.04 16 9 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 10 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 11 N -0.89 -25.49 11.32 55.43 0.63 -24.87 16 12 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 C 0.49 10.75 7.55 -10.42 -0.08 10.67 16 17 O -0.51 -12.45 15.73 5.54 0.09 -12.36 16 18 C -0.13 -2.15 2.60 -92.08 -0.24 -2.39 16 19 H 0.12 1.66 8.14 -51.93 -0.42 1.24 16 20 C -0.06 -0.87 2.51 -90.62 -0.23 -1.10 16 21 C -0.16 -1.52 8.46 37.15 0.31 -1.21 16 22 C -0.15 -2.08 8.99 37.16 0.33 -1.74 16 23 H 0.08 0.73 6.93 -51.93 -0.36 0.37 16 24 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.08 0.59 7.65 -51.93 -0.40 0.20 16 26 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.10 2.63 6.07 -51.93 -0.32 2.31 16 29 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.63 4.29 -51.93 -0.22 0.40 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 1.24 6.18 -51.93 -0.32 0.92 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 292.75 15.07 4.41 4.41 Total: -1.00 -31.68 292.75 -5.41 -37.09 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -5.36 Total: -1.39 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -0.39 Total: -5.27 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.87 Total: -39.09 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.09 Total: -12.36 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.68 -5.41 -37.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899349584.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.225 kcal (2) G-P(sol) polarization free energy of solvation -31.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds