Wall clock time and date at job start Sun Mar 29 2020 22:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.27568 * 126.42091 * 2 1 4 4 N 1.39147 * 113.17198 * 180.26076 * 3 2 1 5 5 C 1.46498 * 124.44353 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47087 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47076 * 299.99941 * 5 4 3 8 8 C 1.50695 * 109.46840 * 59.99980 * 5 4 3 9 9 H 1.08004 * 120.00459 * 0.02562 * 8 5 4 10 10 C 1.37881 * 119.99981 * 180.02562 * 8 5 4 11 11 N 1.31515 * 119.99927 * 359.97438 * 10 8 5 12 12 Si 1.86803 * 120.00078 * 179.97438 * 10 8 5 13 13 H 1.48498 * 109.47206 * 60.00094 * 12 10 8 14 14 H 1.48501 * 109.46809 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47208 * 299.99867 * 12 10 8 16 16 C 1.34963 * 111.11747 * 359.97438 * 4 3 2 17 17 O 1.21302 * 127.49650 * 180.02562 * 16 4 3 18 18 C 1.51446 * 126.41759 * 180.30337 * 2 1 3 19 19 H 1.08999 * 110.60463 * 61.22156 * 18 2 1 20 20 C 1.53000 * 110.60684 * 298.25830 * 18 2 1 21 21 C 1.52995 * 109.47354 * 59.99536 * 20 18 2 22 22 C 1.53001 * 109.47050 * 179.97438 * 20 18 2 23 23 H 1.08996 * 109.47456 * 269.69286 * 1 2 3 24 24 H 1.09005 * 109.46621 * 29.69541 * 1 2 3 25 25 H 1.09002 * 109.47109 * 149.69090 * 1 2 3 26 26 H 1.09000 * 109.46974 * 299.99899 * 7 5 4 27 27 H 1.09002 * 109.47414 * 59.99891 * 7 5 4 28 28 H 1.09003 * 109.47363 * 179.97438 * 7 5 4 29 29 H 0.96995 * 120.00109 * 180.02562 * 11 10 8 30 30 H 1.09006 * 109.47044 * 299.99817 * 20 18 2 31 31 H 1.09003 * 109.47049 * 59.99676 * 21 20 18 32 32 H 1.08998 * 109.47660 * 180.02562 * 21 20 18 33 33 H 1.08998 * 109.47636 * 300.00034 * 21 20 18 34 34 H 1.08995 * 109.46825 * 299.99621 * 22 20 18 35 35 H 1.08995 * 109.47156 * 59.99643 * 22 20 18 36 36 H 1.09002 * 109.46812 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2643 1.0265 0.0000 4 7 3.6188 0.7076 -0.0058 5 6 4.7022 1.6937 -0.0077 6 1 5.6626 1.1783 -0.0120 7 6 4.5892 2.5732 -1.2545 8 6 4.6001 2.5544 1.2251 9 1 3.8077 2.3836 1.9389 10 6 5.5183 3.5599 1.4419 11 7 6.4835 3.7675 0.5731 12 14 5.3913 4.6272 2.9697 13 1 5.5011 3.7740 4.1802 14 1 6.4896 5.6267 2.9679 15 1 4.0827 5.3290 2.9759 16 6 3.8035 -0.6293 -0.0095 17 8 4.8579 -1.2290 -0.0144 18 6 2.4060 -1.2187 -0.0065 19 1 2.2385 -1.8142 -0.9039 20 6 2.1801 -2.0612 1.2505 21 6 0.7219 -2.5213 1.3008 22 6 3.0993 -3.2838 1.2170 23 1 -0.3634 -0.0055 1.0276 24 1 -0.3633 0.8928 -0.5091 25 1 -0.3633 -0.8872 -0.5186 26 1 4.6630 1.9506 -2.1461 27 1 3.6287 3.0886 -1.2498 28 1 5.3950 3.3072 -1.2557 29 1 7.1296 4.4746 0.7258 30 1 2.4029 -1.4627 2.1340 31 1 0.4990 -3.1197 0.4174 32 1 0.5607 -3.1212 2.1965 33 1 0.0666 -1.6506 1.3245 34 1 2.8761 -3.8821 0.3337 35 1 4.1383 -2.9563 1.1810 36 1 2.9387 -3.8838 2.1128 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899349584.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:20 Heat of formation + Delta-G solvation = -14.963268 kcal Electronic energy + Delta-G solvation = -17686.488631 eV Core-core repulsion = 14977.929995 eV Total energy + Delta-G solvation = -2708.558636 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.36581 -38.47566 -37.38429 -35.78675 -33.68460 -31.69837 -29.26036 -28.81305 -27.52272 -27.38636 -23.55450 -22.28532 -21.23876 -20.25669 -18.66013 -17.72163 -17.06061 -16.57072 -16.48913 -15.76138 -15.16026 -14.68884 -14.50896 -14.31670 -14.12381 -13.67653 -13.37398 -13.33535 -13.14949 -13.07737 -12.93749 -12.84904 -12.72631 -12.36174 -12.24577 -12.19704 -11.84061 -11.69159 -11.25818 -11.19697 -10.64454 -10.43149 -9.43692 -8.24745 -6.41272 0.75021 1.35822 1.38996 1.46736 1.70102 1.80256 2.35730 2.91947 3.04284 3.18446 3.70844 3.88143 4.21506 4.34579 4.45006 4.54450 4.64781 4.75537 4.81277 4.84559 4.87004 4.89807 4.98441 5.04202 5.12686 5.23276 5.24194 5.39572 5.44160 5.53221 5.59673 5.68231 5.85265 6.03019 6.59931 6.87032 7.11192 7.29435 8.80259 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.027988 B = 0.007391 C = 0.007199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.176921 B = 3787.508672 C = 3888.232772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.090 3.910 3 N -0.261 5.261 4 N -0.457 5.457 5 C 0.287 3.713 6 H 0.017 0.983 7 C -0.126 4.126 8 C -0.538 4.538 9 H 0.050 0.950 10 C 0.017 3.983 11 N -0.916 5.916 12 Si 0.970 3.030 13 H -0.275 1.275 14 H -0.274 1.274 15 H -0.266 1.266 16 C 0.467 3.533 17 O -0.556 6.556 18 C -0.125 4.125 19 H 0.152 0.848 20 C -0.061 4.061 21 C -0.150 4.150 22 C -0.152 4.152 23 H 0.107 0.893 24 H 0.085 0.915 25 H 0.121 0.879 26 H 0.019 0.981 27 H 0.042 0.958 28 H 0.078 0.922 29 H 0.269 0.731 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.030 0.970 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.780 -10.451 -0.168 18.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.103 4.103 3 N -0.067 5.067 4 N -0.274 5.274 5 C 0.187 3.813 6 H 0.035 0.965 7 C -0.185 4.185 8 C -0.576 4.576 9 H 0.069 0.931 10 C -0.183 4.183 11 N -0.555 5.555 12 Si 0.794 3.206 13 H -0.201 1.201 14 H -0.199 1.199 15 H -0.191 1.191 16 C 0.256 3.744 17 O -0.434 6.434 18 C -0.148 4.148 19 H 0.170 0.830 20 C -0.081 4.081 21 C -0.206 4.206 22 C -0.209 4.209 23 H 0.125 0.875 24 H 0.103 0.897 25 H 0.140 0.860 26 H 0.038 0.962 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.794 -9.522 -0.221 17.594 hybrid contribution 1.179 0.051 0.574 1.313 sum -13.614 -9.471 0.353 16.588 Atomic orbital electron populations 1.20752 0.81091 1.05882 1.05273 1.26220 0.99140 0.88993 0.95946 1.74614 0.89139 1.28619 1.14334 1.50399 1.03732 1.06561 1.66672 1.18628 0.81650 0.85233 0.95813 0.96499 1.21814 1.01948 0.99979 0.94749 1.21346 1.13335 1.16679 1.06283 0.93123 1.25751 0.94278 0.98121 1.00117 1.69972 1.15795 1.32839 1.36846 0.85428 0.78288 0.78130 0.78715 1.20066 1.19910 1.19084 1.22291 0.92667 0.83529 0.75905 1.90624 1.33230 1.67011 1.52563 1.21994 0.89982 0.98084 1.04774 0.83048 1.20783 0.99696 0.95084 0.92531 1.22154 0.91744 1.03041 1.03699 1.21906 0.98672 0.97105 1.03197 0.87477 0.89673 0.86025 0.96164 0.93894 0.90377 0.92134 0.93692 0.90107 0.91184 0.89613 0.90807 0.95085 0.90668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.09 8.50 71.23 0.61 -0.48 16 2 C 0.09 2.59 6.85 46.83 0.32 2.91 16 3 N -0.26 -10.78 11.77 -40.85 -0.48 -11.26 16 4 N -0.46 -22.50 3.23 -444.73 -1.44 -23.94 16 5 C 0.29 16.35 2.98 44.24 0.13 16.49 16 6 H 0.02 1.11 7.68 -2.39 -0.02 1.09 16 7 C -0.13 -6.70 9.18 71.98 0.66 -6.04 16 8 C -0.54 -31.85 8.72 25.60 0.22 -31.62 16 9 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 10 C 0.02 0.99 5.30 84.66 0.45 1.44 16 11 N -0.92 -54.12 11.32 21.45 0.24 -53.88 16 12 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 14 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 15 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 16 C 0.47 21.27 7.55 87.94 0.66 21.93 16 17 O -0.56 -28.95 15.73 -3.10 -0.05 -29.00 16 18 C -0.12 -3.77 2.60 -11.74 -0.03 -3.80 16 19 H 0.15 3.67 8.14 -2.39 -0.02 3.66 16 20 C -0.06 -1.53 2.51 -10.80 -0.03 -1.56 16 21 C -0.15 -2.11 8.46 71.98 0.61 -1.50 16 22 C -0.15 -3.88 8.99 71.98 0.65 -3.23 16 23 H 0.11 1.26 6.93 -2.39 -0.02 1.25 16 24 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 25 H 0.12 0.93 7.65 -2.39 -0.02 0.91 16 26 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.08 4.41 6.07 -2.39 -0.01 4.39 16 29 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 30 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.09 0.97 4.29 -2.39 -0.01 0.96 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.03 1.06 6.18 -2.39 -0.01 1.04 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -75.68 292.75 5.62 -70.06 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 1.06 Total: 6.47 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: 4.25 Total: -5.47 kcal Atomic # 7 Polarization: -87.40 SS G_CDS: -1.67 Total: -89.07 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.05 Total: -29.00 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -75.68 5.62 -70.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899349584.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.100 kcal (2) G-P(sol) polarization free energy of solvation -75.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds