Wall clock time and date at job start Sun Mar 29 2020 22:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36934 * 120.00080 * 2 1 4 4 H 1.08005 * 119.99742 * 202.34850 * 3 2 1 5 5 C 1.38809 * 120.00192 * 22.34418 * 3 2 1 6 6 N 1.31622 * 119.99714 * 11.35419 * 5 3 2 7 7 Si 1.86801 * 120.00179 * 191.34965 * 5 3 2 8 8 H 1.48500 * 109.46954 * 0.02562 * 7 5 3 9 9 H 1.48495 * 109.47000 * 120.00198 * 7 5 3 10 10 H 1.48497 * 109.47205 * 240.00366 * 7 5 3 11 11 C 1.46502 * 119.99942 * 179.97438 * 2 1 3 12 12 C 1.50697 * 109.47611 * 270.00146 * 11 2 1 13 13 C 1.34330 * 126.16400 * 95.02436 * 12 11 2 14 14 O 1.34752 * 107.11222 * 179.97438 * 13 12 11 15 15 C 1.33961 * 107.75382 * 0.02562 * 14 13 12 16 16 C 1.50703 * 125.61583 * 179.97438 * 15 14 13 17 17 C 1.53007 * 109.47136 * 240.02733 * 16 15 14 18 18 C 1.52999 * 109.47272 * 0.02562 * 16 15 14 19 19 C 1.52999 * 109.47031 * 120.02791 * 16 15 14 20 20 N 1.30253 * 108.76503 * 0.02562 * 15 14 13 21 21 H 1.08997 * 109.47200 * 274.21327 * 1 2 3 22 22 H 1.08993 * 109.47089 * 34.21414 * 1 2 3 23 23 H 1.09005 * 109.46877 * 154.21504 * 1 2 3 24 24 H 0.97006 * 119.99732 * 179.97438 * 6 5 3 25 25 H 1.08998 * 109.46843 * 150.00031 * 11 2 1 26 26 H 1.08997 * 109.46893 * 30.00834 * 11 2 1 27 27 H 1.08003 * 126.44197 * 0.24745 * 13 12 11 28 28 H 1.09000 * 109.47096 * 59.99792 * 17 16 15 29 29 H 1.08997 * 109.47064 * 180.02562 * 17 16 15 30 30 H 1.09004 * 109.46607 * 300.00080 * 17 16 15 31 31 H 1.09000 * 109.47097 * 60.00138 * 18 16 15 32 32 H 1.08997 * 109.47202 * 179.97438 * 18 16 15 33 33 H 1.09000 * 109.47050 * 300.00262 * 18 16 15 34 34 H 1.08999 * 109.47193 * 60.00190 * 19 16 15 35 35 H 1.09007 * 109.47112 * 180.02562 * 19 16 15 36 36 H 1.09000 * 109.47086 * 299.99708 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2209 -0.3557 5 6 1.5339 2.3429 0.4570 6 7 0.3842 2.2690 1.0937 7 14 2.3367 4.0047 0.1686 8 1 3.6138 3.8167 -0.5655 9 1 1.4268 4.8615 -0.6334 10 1 2.6075 4.6571 1.4748 11 6 2.1975 -1.2688 0.0006 12 6 2.4487 -1.7033 1.4215 13 6 1.6900 -2.5495 2.1375 14 8 2.2639 -2.6667 3.3511 15 6 3.3588 -1.8949 3.3613 16 6 4.3031 -1.7268 4.5237 17 6 4.3421 -0.2550 4.9404 18 6 3.8203 -2.5772 5.7003 19 6 5.7058 -2.1771 4.1106 20 7 3.4722 -1.3130 2.2015 21 1 -0.3633 0.0755 1.0249 22 1 -0.3633 0.8498 -0.5778 23 1 -0.3633 -0.9254 -0.4471 24 1 -0.0459 3.0776 1.4134 25 1 3.1499 -1.1386 -0.5133 26 1 1.6085 -2.0285 -0.5130 27 1 0.7916 -3.0464 1.8020 28 1 3.3428 0.0658 5.2346 29 1 5.0254 -0.1333 5.7808 30 1 4.6861 0.3509 4.1021 31 1 3.7925 -3.6257 5.4035 32 1 4.5035 -2.4559 6.5409 33 1 2.8210 -2.2564 5.9946 34 1 6.0498 -1.5712 3.2724 35 1 6.3887 -2.0559 4.9515 36 1 5.6780 -3.2256 3.8138 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929490335.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:56 Heat of formation + Delta-G solvation = 34.101657 kcal Electronic energy + Delta-G solvation = -17509.345250 eV Core-core repulsion = 14802.914229 eV Total energy + Delta-G solvation = -2706.431021 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.59095 -36.75826 -35.75885 -33.80538 -31.28494 -29.13906 -27.28332 -27.14893 -26.19832 -25.52074 -22.68132 -21.70598 -20.13642 -18.95949 -16.66948 -16.44332 -15.94018 -14.90443 -14.76813 -14.20513 -13.88537 -13.51007 -13.41712 -13.27765 -12.49962 -12.24581 -12.17707 -11.71211 -11.58094 -11.28591 -11.09916 -10.99861 -10.88242 -10.83870 -10.63175 -10.46438 -10.12859 -9.92489 -9.81156 -9.63334 -8.50817 -8.03343 -6.76499 -5.67227 -3.11889 2.17544 3.32497 3.40700 3.48010 3.50023 3.54221 4.42914 4.57846 4.92893 4.98629 5.17184 5.49159 5.58689 5.68011 5.69561 5.74742 5.79584 5.83538 5.90643 5.93703 6.00757 6.09589 6.29134 6.36356 6.48217 6.53498 6.68909 6.73550 6.78508 7.09812 7.39784 7.74779 7.89525 8.43519 8.57228 9.28874 9.89651 10.37672 11.38377 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.024459 B = 0.007946 C = 0.006769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.487449 B = 3523.065524 C = 4135.743920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.588 5.588 3 C -0.240 4.240 4 H 0.072 0.928 5 C 0.000 4.000 6 N -0.910 5.910 7 Si 0.905 3.095 8 H -0.277 1.277 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.217 3.783 12 C 0.002 3.998 13 C -0.106 4.106 14 O -0.213 6.213 15 C 0.177 3.823 16 C 0.037 3.963 17 C -0.138 4.138 18 C -0.143 4.143 19 C -0.136 4.136 20 N -0.454 5.454 21 H 0.026 0.974 22 H 0.049 0.951 23 H -0.002 1.002 24 H 0.250 0.750 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.203 0.797 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.766 -10.151 6.267 13.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.309 5.309 3 C -0.370 4.370 4 H 0.090 0.910 5 C -0.198 4.198 6 N -0.556 5.556 7 Si 0.736 3.264 8 H -0.202 1.202 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.089 3.911 12 C -0.122 4.122 13 C -0.176 4.176 14 O -0.100 6.100 15 C -0.031 4.031 16 C 0.036 3.964 17 C -0.196 4.196 18 C -0.201 4.201 19 C -0.193 4.193 20 N -0.183 5.183 21 H 0.045 0.955 22 H 0.067 0.933 23 H 0.016 0.984 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.219 0.781 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.105 -9.598 6.157 12.935 hybrid contribution -0.526 0.561 0.260 0.812 sum 5.579 -9.037 6.417 12.409 Atomic orbital electron populations 1.20837 0.82293 0.95740 0.99311 1.44157 1.01928 1.00423 1.84435 1.19290 0.98013 0.84766 1.34960 0.91042 1.25051 0.97745 0.98616 0.98379 1.70088 1.17959 1.26815 1.40729 0.86153 0.78713 0.84204 0.77362 1.20207 1.21712 1.21833 1.19394 0.96762 0.88526 0.86436 1.23475 0.91564 0.95295 1.01868 1.24568 1.02458 1.07230 0.83383 1.84304 1.34785 1.56106 1.34765 1.26036 0.88142 0.92362 0.96520 1.18942 0.91435 0.97731 0.88303 1.21877 1.02493 0.93242 1.02005 1.21876 1.01786 0.99654 0.96774 1.21858 0.93666 1.01581 1.02229 1.70302 1.24662 1.21959 1.01426 0.95533 0.93266 0.98397 0.93960 0.92042 0.92534 0.78054 0.92257 0.91673 0.90868 0.92148 0.91511 0.91996 0.91079 0.91571 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.09 9.01 59.85 0.54 4.63 16 2 N -0.59 -15.33 2.91 -182.51 -0.53 -15.87 16 3 C -0.24 -6.89 9.67 -15.06 -0.15 -7.03 16 4 H 0.07 2.04 7.84 -52.48 -0.41 1.63 16 5 C 0.00 -0.01 5.13 -17.43 -0.09 -0.10 16 6 N -0.91 -27.42 10.59 55.49 0.59 -26.83 16 7 Si 0.91 22.74 29.57 -169.99 -5.03 17.72 16 8 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 9 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 10 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 11 C 0.22 4.75 6.25 -5.19 -0.03 4.71 16 12 C 0.00 0.03 6.69 -82.82 -0.55 -0.52 16 13 C -0.11 -2.02 12.08 29.35 0.35 -1.67 16 14 O -0.21 -4.05 10.17 5.38 0.05 -4.00 16 15 C 0.18 3.37 6.47 -12.95 -0.08 3.28 16 16 C 0.04 0.54 0.99 -155.66 -0.15 0.39 16 17 C -0.14 -2.03 8.46 37.16 0.31 -1.72 16 18 C -0.14 -1.70 8.02 37.16 0.30 -1.40 16 19 C -0.14 -1.68 8.46 37.16 0.31 -1.37 16 20 N -0.45 -10.06 11.29 -7.36 -0.08 -10.14 16 21 H 0.03 0.73 7.42 -51.93 -0.39 0.34 16 22 H 0.05 1.32 7.19 -51.93 -0.37 0.95 16 23 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 24 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.06 1.34 8.03 -51.93 -0.42 0.92 16 26 H 0.06 1.05 7.86 -51.93 -0.41 0.64 16 27 H 0.20 3.11 8.06 -52.48 -0.42 2.68 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 302.91 15.07 4.56 4.56 Total: -1.00 -32.97 302.91 -5.44 -38.41 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -5.77 Total: -3.06 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: 0.76 Total: -0.80 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -0.03 Total: -52.84 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: 0.05 Total: -4.00 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.03 Total: 17.72 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.97 -5.44 -38.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929490335.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.508 kcal (2) G-P(sol) polarization free energy of solvation -32.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds