Wall clock time and date at job start Sun Mar 29 2020 22:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36934 * 120.00080 * 2 1 4 4 H 1.08005 * 119.99742 * 202.34850 * 3 2 1 5 5 C 1.38809 * 120.00192 * 22.34418 * 3 2 1 6 6 N 1.31622 * 119.99714 * 11.35419 * 5 3 2 7 7 Si 1.86801 * 120.00179 * 191.34965 * 5 3 2 8 8 H 1.48500 * 109.46954 * 0.02562 * 7 5 3 9 9 H 1.48495 * 109.47000 * 120.00198 * 7 5 3 10 10 H 1.48497 * 109.47205 * 240.00366 * 7 5 3 11 11 C 1.46502 * 119.99942 * 179.97438 * 2 1 3 12 12 C 1.50697 * 109.47611 * 270.00146 * 11 2 1 13 13 C 1.34330 * 126.16400 * 95.02436 * 12 11 2 14 14 O 1.34752 * 107.11222 * 179.97438 * 13 12 11 15 15 C 1.33961 * 107.75382 * 0.02562 * 14 13 12 16 16 C 1.50703 * 125.61583 * 179.97438 * 15 14 13 17 17 C 1.53007 * 109.47136 * 240.02733 * 16 15 14 18 18 C 1.52999 * 109.47272 * 0.02562 * 16 15 14 19 19 C 1.52999 * 109.47031 * 120.02791 * 16 15 14 20 20 N 1.30253 * 108.76503 * 0.02562 * 15 14 13 21 21 H 1.08997 * 109.47200 * 274.21327 * 1 2 3 22 22 H 1.08993 * 109.47089 * 34.21414 * 1 2 3 23 23 H 1.09005 * 109.46877 * 154.21504 * 1 2 3 24 24 H 0.97006 * 119.99732 * 179.97438 * 6 5 3 25 25 H 1.08998 * 109.46843 * 150.00031 * 11 2 1 26 26 H 1.08997 * 109.46893 * 30.00834 * 11 2 1 27 27 H 1.08003 * 126.44197 * 0.24745 * 13 12 11 28 28 H 1.09000 * 109.47096 * 59.99792 * 17 16 15 29 29 H 1.08997 * 109.47064 * 180.02562 * 17 16 15 30 30 H 1.09004 * 109.46607 * 300.00080 * 17 16 15 31 31 H 1.09000 * 109.47097 * 60.00138 * 18 16 15 32 32 H 1.08997 * 109.47202 * 179.97438 * 18 16 15 33 33 H 1.09000 * 109.47050 * 300.00262 * 18 16 15 34 34 H 1.08999 * 109.47193 * 60.00190 * 19 16 15 35 35 H 1.09007 * 109.47112 * 180.02562 * 19 16 15 36 36 H 1.09000 * 109.47086 * 299.99708 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2209 -0.3557 5 6 1.5339 2.3429 0.4570 6 7 0.3842 2.2690 1.0937 7 14 2.3367 4.0047 0.1686 8 1 3.6138 3.8167 -0.5655 9 1 1.4268 4.8615 -0.6334 10 1 2.6075 4.6571 1.4748 11 6 2.1975 -1.2688 0.0006 12 6 2.4487 -1.7033 1.4215 13 6 1.6900 -2.5495 2.1375 14 8 2.2639 -2.6667 3.3511 15 6 3.3588 -1.8949 3.3613 16 6 4.3031 -1.7268 4.5237 17 6 4.3421 -0.2550 4.9404 18 6 3.8203 -2.5772 5.7003 19 6 5.7058 -2.1771 4.1106 20 7 3.4722 -1.3130 2.2015 21 1 -0.3633 0.0755 1.0249 22 1 -0.3633 0.8498 -0.5778 23 1 -0.3633 -0.9254 -0.4471 24 1 -0.0459 3.0776 1.4134 25 1 3.1499 -1.1386 -0.5133 26 1 1.6085 -2.0285 -0.5130 27 1 0.7916 -3.0464 1.8020 28 1 3.3428 0.0658 5.2346 29 1 5.0254 -0.1333 5.7808 30 1 4.6861 0.3509 4.1021 31 1 3.7925 -3.6257 5.4035 32 1 4.5035 -2.4559 6.5409 33 1 2.8210 -2.2564 5.9946 34 1 6.0498 -1.5712 3.2724 35 1 6.3887 -2.0559 4.9515 36 1 5.6780 -3.2256 3.8138 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929490335.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:55 Heat of formation + Delta-G solvation = 11.337315 kcal Electronic energy + Delta-G solvation = -17510.332386 eV Core-core repulsion = 14802.914229 eV Total energy + Delta-G solvation = -2707.418157 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.11134 -37.95853 -37.60557 -35.49187 -33.31140 -30.81521 -28.34943 -28.23445 -28.05293 -27.44349 -24.09077 -23.59890 -21.80381 -20.31173 -18.74469 -17.91142 -17.48408 -16.79977 -16.15418 -15.68218 -15.48500 -15.19870 -14.89994 -14.80926 -14.26142 -13.56815 -13.23344 -13.08915 -12.98730 -12.88324 -12.65255 -12.61673 -12.53129 -12.28883 -12.12087 -12.05036 -11.97806 -11.85444 -11.65284 -11.23064 -10.68467 -9.57398 -8.86441 -7.85392 -5.32545 0.68072 1.41387 1.42290 1.53432 1.90176 1.93780 2.50694 3.10691 3.32169 3.80363 3.83762 3.91676 4.00643 4.18194 4.28889 4.61637 4.68211 4.72238 4.80744 4.81463 4.86260 4.90293 4.92716 4.97698 5.10006 5.12989 5.24688 5.31260 5.32894 5.39758 5.55432 5.61736 5.71219 6.30567 7.02133 7.14709 7.83091 8.24643 9.18259 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.024459 B = 0.007946 C = 0.006769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.487449 B = 3523.065524 C = 4135.743920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.605 5.605 3 C -0.247 4.247 4 H 0.064 0.936 5 C -0.055 4.055 6 N -0.940 5.940 7 Si 0.966 3.034 8 H -0.268 1.268 9 H -0.286 1.286 10 H -0.295 1.295 11 C 0.218 3.782 12 C -0.035 4.035 13 C -0.092 4.092 14 O -0.212 6.212 15 C 0.178 3.822 16 C 0.031 3.969 17 C -0.135 4.135 18 C -0.137 4.137 19 C -0.129 4.129 20 N -0.498 5.498 21 H -0.004 1.004 22 H 0.022 0.978 23 H 0.041 0.959 24 H 0.246 0.754 25 H 0.053 0.947 26 H 0.093 0.907 27 H 0.239 0.761 28 H 0.039 0.961 29 H 0.105 0.895 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.101 0.899 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.614 -11.470 7.253 15.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.327 5.327 3 C -0.378 4.378 4 H 0.082 0.918 5 C -0.249 4.249 6 N -0.587 5.587 7 Si 0.794 3.206 8 H -0.192 1.192 9 H -0.212 1.212 10 H -0.223 1.223 11 C 0.091 3.909 12 C -0.157 4.157 13 C -0.163 4.163 14 O -0.099 6.099 15 C -0.030 4.030 16 C 0.030 3.970 17 C -0.193 4.193 18 C -0.194 4.194 19 C -0.187 4.187 20 N -0.228 5.228 21 H 0.015 0.985 22 H 0.040 0.960 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.111 0.889 27 H 0.255 0.745 28 H 0.058 0.942 29 H 0.124 0.876 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.119 0.881 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.120 0.880 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.974 -10.946 7.125 14.806 hybrid contribution -0.742 0.865 -0.038 1.141 sum 6.232 -10.081 7.088 13.809 Atomic orbital electron populations 1.20586 0.82047 0.96711 0.97354 1.44310 1.02352 1.01198 1.84821 1.19477 0.97755 0.86311 1.34240 0.91830 1.25766 0.98530 1.01799 0.98789 1.70251 1.19226 1.27153 1.42061 0.85213 0.78218 0.80207 0.76947 1.19224 1.21202 1.22266 1.19469 0.96599 0.87703 0.87088 1.23407 0.92934 0.97384 1.01989 1.25174 1.02442 1.05890 0.82777 1.84337 1.34853 1.56089 1.34665 1.27043 0.88113 0.90944 0.96873 1.19332 0.91716 0.98125 0.87853 1.21867 1.02195 0.92968 1.02230 1.21862 1.01920 0.99137 0.96482 1.21835 0.92757 1.01258 1.02832 1.70253 1.25890 1.23593 1.03021 0.98545 0.95958 0.94038 0.94495 0.92862 0.88879 0.74480 0.94200 0.87611 0.93917 0.91620 0.88120 0.93143 0.93344 0.87996 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.92 9.01 127.77 1.15 10.07 16 2 N -0.60 -31.63 2.91 -731.32 -2.13 -33.75 16 3 C -0.25 -14.39 9.67 84.03 0.81 -13.58 16 4 H 0.06 3.71 7.84 -2.91 -0.02 3.69 16 5 C -0.05 -3.21 5.13 84.86 0.44 -2.78 16 6 N -0.94 -57.92 10.59 21.65 0.23 -57.69 16 7 Si 0.97 47.58 29.57 68.60 2.03 49.61 16 8 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 9 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 10 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 11 C 0.22 9.40 6.25 85.63 0.53 9.94 16 12 C -0.03 -1.50 6.69 41.26 0.28 -1.23 16 13 C -0.09 -3.38 12.08 66.93 0.81 -2.57 16 14 O -0.21 -7.81 10.17 -3.67 -0.04 -7.85 16 15 C 0.18 6.68 6.47 88.34 0.57 7.25 16 16 C 0.03 0.85 0.99 -52.93 -0.05 0.80 16 17 C -0.13 -3.83 8.46 71.98 0.61 -3.22 16 18 C -0.14 -2.83 8.02 71.98 0.58 -2.26 16 19 C -0.13 -2.92 8.46 71.98 0.61 -2.31 16 20 N -0.50 -22.25 11.29 -291.99 -3.30 -25.55 16 21 H 0.00 -0.21 7.42 -2.39 -0.02 -0.23 16 22 H 0.02 1.19 7.19 -2.39 -0.02 1.18 16 23 H 0.04 1.68 7.84 -2.38 -0.02 1.66 16 24 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 25 H 0.05 2.33 8.03 -2.39 -0.02 2.31 16 26 H 0.09 3.24 7.86 -2.39 -0.02 3.22 16 27 H 0.24 6.58 8.06 -2.91 -0.02 6.56 16 28 H 0.04 1.25 8.14 -2.39 -0.02 1.24 16 29 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -73.16 302.91 4.16 -68.99 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 1.04 Total: 6.14 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 6.33 Total: 0.10 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -5.20 Total: -116.99 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -0.04 Total: -7.85 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.61 kcal Total: -73.16 4.16 -68.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929490335.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.330 kcal (2) G-P(sol) polarization free energy of solvation -73.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds