Wall clock time and date at job start Sun Mar 29 2020 22:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47395 * 2 1 4 4 N 1.30248 * 125.62165 * 89.97334 * 3 2 1 5 5 C 1.34479 * 108.70630 * 179.78172 * 4 3 2 6 6 C 1.34332 * 107.66590 * 0.39219 * 5 4 3 7 7 C 1.50696 * 126.44644 * 179.87394 * 6 5 4 8 8 N 1.46901 * 109.47004 * 85.35410 * 7 6 5 9 9 C 1.46902 * 110.99643 * 75.73658 * 8 7 6 10 10 C 1.52996 * 109.47282 * 66.24128 * 9 8 7 11 11 C 1.46894 * 111.00187 * 199.68840 * 8 7 6 12 12 C 1.50700 * 109.47590 * 170.00062 * 11 8 7 13 13 H 1.08005 * 119.99687 * 0.02562 * 12 11 8 14 14 C 1.37868 * 120.00488 * 180.02562 * 12 11 8 15 15 N 1.31518 * 120.00044 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00167 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47067 * 90.00062 * 16 14 12 18 18 H 1.48496 * 109.47425 * 210.00066 * 16 14 12 19 19 H 1.48493 * 109.47133 * 330.00238 * 16 14 12 20 20 O 1.33971 * 125.61668 * 270.00463 * 3 2 1 21 21 H 1.08998 * 109.46748 * 300.00278 * 1 2 3 22 22 H 1.09001 * 109.47077 * 59.99903 * 1 2 3 23 23 H 1.08991 * 109.46943 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46943 * 240.00237 * 2 1 3 25 25 H 1.08995 * 109.47405 * 119.99824 * 2 1 3 26 26 H 1.07995 * 126.17292 * 180.27356 * 5 4 3 27 27 H 1.08999 * 109.47367 * 325.35797 * 7 6 5 28 28 H 1.09005 * 109.47463 * 205.35789 * 7 6 5 29 29 H 1.09001 * 109.47327 * 306.23678 * 9 8 7 30 30 H 1.09000 * 109.46825 * 186.23945 * 9 8 7 31 31 H 1.09000 * 109.47239 * 61.97860 * 10 9 8 32 32 H 1.09000 * 109.47346 * 181.98422 * 10 9 8 33 33 H 1.09003 * 109.46708 * 301.98024 * 10 9 8 34 34 H 1.08999 * 109.47666 * 290.00355 * 11 8 7 35 35 H 1.09002 * 109.47293 * 49.99988 * 11 8 7 36 36 H 0.97001 * 119.99872 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2849 2.1362 1.0588 5 6 2.7185 3.3475 0.6675 6 6 2.7196 3.3658 -0.6757 7 6 3.1278 4.5196 -1.5550 8 7 4.5828 4.4920 -1.7548 9 6 4.9632 3.4427 -2.7100 10 6 4.4162 3.7916 -4.0955 11 6 5.0795 5.8044 -2.1893 12 6 6.5859 5.8106 -2.1474 13 1 7.1209 4.9276 -1.8302 14 6 7.2812 6.9432 -2.5141 15 7 6.6298 8.0183 -2.9008 16 14 9.1484 6.9510 -2.4614 17 1 9.6824 6.5004 -3.7718 18 1 9.6300 8.3267 -2.1774 19 1 9.6173 6.0320 -1.3934 20 8 2.2924 2.1564 -1.0891 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 3.0112 4.1599 1.3161 27 1 2.8443 5.4579 -1.0781 28 1 2.6268 4.4364 -2.5195 29 1 4.5486 2.4883 -2.3854 30 1 6.0498 3.3699 -2.7560 31 1 4.8578 4.7284 -4.4352 32 1 4.6681 2.9959 -4.7966 33 1 3.3328 3.8990 -4.0419 34 1 4.7436 6.0013 -3.2074 35 1 4.6944 6.5772 -1.5239 36 1 7.1190 8.8153 -3.1584 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929775856.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:03 Heat of formation + Delta-G solvation = 17.844112 kcal Electronic energy + Delta-G solvation = -16996.404438 eV Core-core repulsion = 14289.268438 eV Total energy + Delta-G solvation = -2707.136001 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.02344 -37.38115 -34.62686 -33.89966 -32.66900 -30.72934 -29.08734 -27.01115 -25.06117 -23.66916 -23.18838 -21.80156 -20.65717 -19.44811 -16.76262 -16.44630 -16.22247 -15.26040 -14.83775 -14.67374 -14.57724 -14.00297 -13.72190 -13.06017 -12.89148 -12.67774 -12.22493 -11.93764 -11.84432 -11.60180 -11.35199 -11.19056 -11.01188 -10.97278 -10.76807 -10.61922 -10.29309 -10.07204 -9.89681 -9.29243 -8.49070 -8.36421 -7.33617 -6.06738 -4.07813 1.74114 2.87758 2.99734 3.30003 3.36644 3.41386 4.18555 4.40581 4.82443 4.99153 5.00852 5.15090 5.20616 5.29674 5.46660 5.54779 5.57181 5.74190 5.79645 5.86109 5.90528 5.95433 6.10468 6.15834 6.30055 6.43361 6.63121 6.64598 6.85580 7.19008 7.32635 7.73193 7.97223 8.02600 8.10069 8.45163 8.99139 9.56492 11.04018 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.044142 B = 0.005062 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.167514 B = 5530.541985 C = 5648.071435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.022 4.022 3 C 0.170 3.830 4 N -0.483 5.483 5 C -0.036 4.036 6 C -0.015 4.015 7 C 0.128 3.872 8 N -0.530 5.530 9 C 0.062 3.938 10 C -0.188 4.188 11 C 0.189 3.811 12 C -0.506 4.506 13 H 0.063 0.937 14 C 0.057 3.943 15 N -0.899 5.899 16 Si 0.897 3.103 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.273 1.273 20 O -0.203 6.203 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.069 0.931 24 H 0.089 0.911 25 H 0.102 0.898 26 H 0.182 0.818 27 H 0.102 0.898 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.043 0.957 34 H 0.004 0.996 35 H 0.031 0.969 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.356 -12.309 2.253 16.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.060 4.060 3 C -0.037 4.037 4 N -0.212 5.212 5 C -0.175 4.175 6 C -0.068 4.068 7 C -0.001 4.001 8 N -0.254 5.254 9 C -0.067 4.067 10 C -0.246 4.246 11 C 0.065 3.935 12 C -0.544 4.544 13 H 0.081 0.919 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.725 3.275 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.198 1.198 20 O -0.090 6.090 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.088 0.912 24 H 0.107 0.893 25 H 0.120 0.880 26 H 0.199 0.801 27 H 0.120 0.880 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.022 0.978 35 H 0.049 0.951 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.175 -12.442 3.211 16.390 hybrid contribution 0.827 0.686 -1.421 1.782 sum -9.348 -11.755 1.790 15.125 Atomic orbital electron populations 1.21774 0.93500 1.02552 1.02876 1.19950 0.96512 0.84793 1.04771 1.26095 1.01688 0.96805 0.79150 1.70362 1.16333 1.04133 1.30410 1.22970 1.05112 0.96132 0.93244 1.23727 1.01722 0.85631 0.95759 1.20558 0.91930 0.91201 0.96365 1.62334 1.07017 1.08898 1.47186 1.21963 1.01652 0.93706 0.89329 1.22371 1.00297 1.02808 0.99161 1.19854 0.95866 0.83120 0.94682 1.21104 0.90719 0.98722 1.43877 0.91900 1.24958 0.98695 0.95436 0.95386 1.69950 1.35575 1.02921 1.45379 0.86505 0.85362 0.77267 0.78363 1.20751 1.21237 1.19761 1.84379 1.64061 1.22880 1.37674 0.91857 0.92255 0.91218 0.89256 0.88011 0.80067 0.88027 0.93217 0.93307 0.89919 0.90817 0.93304 0.93764 0.97839 0.95099 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.90 37.16 0.37 -0.86 16 2 C -0.02 -0.22 6.56 -27.88 -0.18 -0.40 16 3 C 0.17 2.53 7.60 -12.95 -0.10 2.43 16 4 N -0.48 -8.12 11.29 -11.10 -0.13 -8.25 16 5 C -0.04 -0.61 11.80 -17.77 -0.21 -0.82 16 6 C -0.01 -0.26 6.23 -35.69 -0.22 -0.48 16 7 C 0.13 2.29 5.44 -4.98 -0.03 2.27 16 8 N -0.53 -11.22 4.62 -237.52 -1.10 -12.32 16 9 C 0.06 1.22 5.74 -3.82 -0.02 1.19 16 10 C -0.19 -3.39 9.24 37.16 0.34 -3.05 16 11 C 0.19 4.70 4.42 -4.98 -0.02 4.68 16 12 C -0.51 -13.84 8.55 -34.44 -0.29 -14.13 16 13 H 0.06 1.73 7.10 -52.48 -0.37 1.36 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -26.05 13.29 55.43 0.74 -25.31 16 16 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 O -0.20 -3.39 10.50 5.33 0.06 -3.33 16 21 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.18 2.81 8.06 -52.49 -0.42 2.39 16 27 H 0.10 1.72 7.73 -51.93 -0.40 1.32 16 28 H 0.05 0.86 5.92 -51.93 -0.31 0.55 16 29 H 0.05 0.91 7.26 -51.93 -0.38 0.53 16 30 H 0.08 1.74 6.92 -51.93 -0.36 1.38 16 31 H 0.07 1.52 6.35 -51.93 -0.33 1.19 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.04 0.75 6.22 -51.93 -0.32 0.43 16 34 H 0.00 0.10 5.98 -51.93 -0.31 -0.21 16 35 H 0.03 0.82 7.83 -51.93 -0.41 0.41 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 298.01 15.07 4.49 4.49 Total: -1.00 -30.43 298.01 -6.71 -37.13 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -5.28 Total: -1.09 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -0.47 Total: -7.70 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: -0.49 Total: -45.88 kcal Atomic # 8 Polarization: -3.39 SS G_CDS: 0.06 Total: -3.33 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.43 -6.71 -37.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929775856.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.977 kcal (2) G-P(sol) polarization free energy of solvation -30.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds