Wall clock time and date at job start Sun Mar 29 2020 22:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47395 * 2 1 4 4 N 1.30248 * 125.62165 * 89.97334 * 3 2 1 5 5 C 1.34479 * 108.70630 * 179.78172 * 4 3 2 6 6 C 1.34332 * 107.66590 * 0.39219 * 5 4 3 7 7 C 1.50696 * 126.44644 * 179.87394 * 6 5 4 8 8 N 1.46901 * 109.47004 * 85.35410 * 7 6 5 9 9 C 1.46902 * 110.99643 * 75.73658 * 8 7 6 10 10 C 1.52996 * 109.47282 * 66.24128 * 9 8 7 11 11 C 1.46894 * 111.00187 * 199.68840 * 8 7 6 12 12 C 1.50700 * 109.47590 * 170.00062 * 11 8 7 13 13 H 1.08005 * 119.99687 * 0.02562 * 12 11 8 14 14 C 1.37868 * 120.00488 * 180.02562 * 12 11 8 15 15 N 1.31518 * 120.00044 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00167 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47067 * 90.00062 * 16 14 12 18 18 H 1.48496 * 109.47425 * 210.00066 * 16 14 12 19 19 H 1.48493 * 109.47133 * 330.00238 * 16 14 12 20 20 O 1.33971 * 125.61668 * 270.00463 * 3 2 1 21 21 H 1.08998 * 109.46748 * 300.00278 * 1 2 3 22 22 H 1.09001 * 109.47077 * 59.99903 * 1 2 3 23 23 H 1.08991 * 109.46943 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46943 * 240.00237 * 2 1 3 25 25 H 1.08995 * 109.47405 * 119.99824 * 2 1 3 26 26 H 1.07995 * 126.17292 * 180.27356 * 5 4 3 27 27 H 1.08999 * 109.47367 * 325.35797 * 7 6 5 28 28 H 1.09005 * 109.47463 * 205.35789 * 7 6 5 29 29 H 1.09001 * 109.47327 * 306.23678 * 9 8 7 30 30 H 1.09000 * 109.46825 * 186.23945 * 9 8 7 31 31 H 1.09000 * 109.47239 * 61.97860 * 10 9 8 32 32 H 1.09000 * 109.47346 * 181.98422 * 10 9 8 33 33 H 1.09003 * 109.46708 * 301.98024 * 10 9 8 34 34 H 1.08999 * 109.47666 * 290.00355 * 11 8 7 35 35 H 1.09002 * 109.47293 * 49.99988 * 11 8 7 36 36 H 0.97001 * 119.99872 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2849 2.1362 1.0588 5 6 2.7185 3.3475 0.6675 6 6 2.7196 3.3658 -0.6757 7 6 3.1278 4.5196 -1.5550 8 7 4.5828 4.4920 -1.7548 9 6 4.9632 3.4427 -2.7100 10 6 4.4162 3.7916 -4.0955 11 6 5.0795 5.8044 -2.1893 12 6 6.5859 5.8106 -2.1474 13 1 7.1209 4.9276 -1.8302 14 6 7.2812 6.9432 -2.5141 15 7 6.6298 8.0183 -2.9008 16 14 9.1484 6.9510 -2.4614 17 1 9.6824 6.5004 -3.7718 18 1 9.6300 8.3267 -2.1774 19 1 9.6173 6.0320 -1.3934 20 8 2.2924 2.1564 -1.0891 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 3.0112 4.1599 1.3161 27 1 2.8443 5.4579 -1.0781 28 1 2.6268 4.4364 -2.5195 29 1 4.5486 2.4883 -2.3854 30 1 6.0498 3.3699 -2.7560 31 1 4.8578 4.7284 -4.4352 32 1 4.6681 2.9959 -4.7966 33 1 3.3328 3.8990 -4.0419 34 1 4.7436 6.0013 -3.2074 35 1 4.6944 6.5772 -1.5239 36 1 7.1190 8.8153 -3.1584 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929775856.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:02 Heat of formation + Delta-G solvation = -3.695297 kcal Electronic energy + Delta-G solvation = -16997.338457 eV Core-core repulsion = 14289.268438 eV Total energy + Delta-G solvation = -2708.070020 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.28497 -39.03829 -35.81268 -34.99497 -34.62272 -32.08405 -30.77775 -28.64343 -26.48008 -25.10601 -24.65789 -23.16219 -21.86515 -21.06755 -18.42282 -17.87596 -17.72956 -16.92507 -16.51592 -16.04724 -15.77036 -15.47256 -14.73776 -14.69448 -14.33924 -13.98113 -13.52496 -13.47540 -13.15274 -12.97440 -12.74885 -12.63698 -12.54235 -12.48707 -12.25881 -12.03508 -11.92094 -11.67147 -11.52658 -11.30420 -10.59449 -9.67831 -9.04381 -8.19033 -6.27432 0.47632 1.41521 1.42694 1.53762 1.65654 1.74469 2.41554 3.10868 3.14269 3.38122 3.77606 4.06186 4.11306 4.20376 4.27795 4.33480 4.37981 4.43272 4.55377 4.62234 4.84046 4.89471 4.96130 4.98436 5.00784 5.09818 5.20087 5.29018 5.32345 5.44476 5.45575 5.66114 6.03889 6.27273 6.54097 6.76407 6.86767 7.41427 8.91520 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.044142 B = 0.005062 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.167514 B = 5530.541985 C = 5648.071435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.025 4.025 3 C 0.183 3.817 4 N -0.509 5.509 5 C -0.040 4.040 6 C -0.032 4.032 7 C 0.134 3.866 8 N -0.541 5.541 9 C 0.064 3.936 10 C -0.177 4.177 11 C 0.205 3.795 12 C -0.520 4.520 13 H 0.057 0.943 14 C 0.007 3.993 15 N -0.931 5.931 16 Si 0.962 3.038 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.269 1.269 20 O -0.210 6.210 21 H 0.052 0.948 22 H 0.053 0.947 23 H 0.099 0.901 24 H 0.110 0.890 25 H 0.116 0.884 26 H 0.189 0.811 27 H 0.105 0.895 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.055 0.945 34 H -0.012 1.012 35 H 0.009 0.991 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.549 -14.200 2.234 17.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.063 4.063 3 C -0.024 4.024 4 N -0.239 5.239 5 C -0.179 4.179 6 C -0.085 4.085 7 C 0.006 3.994 8 N -0.265 5.265 9 C -0.064 4.064 10 C -0.236 4.236 11 C 0.079 3.921 12 C -0.558 4.558 13 H 0.075 0.925 14 C -0.191 4.191 15 N -0.572 5.572 16 Si 0.788 3.212 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.193 1.193 20 O -0.098 6.098 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.118 0.882 24 H 0.129 0.871 25 H 0.135 0.865 26 H 0.206 0.794 27 H 0.123 0.877 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.006 0.994 35 H 0.027 0.973 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.378 -14.346 3.202 17.993 hybrid contribution 0.800 1.168 -1.375 1.974 sum -9.578 -13.177 1.827 16.392 Atomic orbital electron populations 1.21759 0.92075 1.04286 1.02070 1.20339 0.97565 0.81823 1.06529 1.27252 0.99051 0.97921 0.78218 1.70406 1.17859 1.04324 1.31292 1.23193 1.04584 0.96654 0.93435 1.23431 1.03467 0.86059 0.95567 1.20469 0.89838 0.92068 0.97051 1.62190 1.09377 1.07324 1.47603 1.21924 1.00660 0.93749 0.90021 1.22242 1.00642 1.02070 0.98600 1.19489 0.94802 0.84561 0.93204 1.21386 0.92141 0.98594 1.43674 0.92473 1.25770 1.03337 0.95046 0.94957 1.70058 1.37378 1.03514 1.46216 0.85484 0.79778 0.77357 0.78620 1.19891 1.20782 1.19345 1.84375 1.64329 1.22720 1.38369 0.92917 0.92810 0.88223 0.87148 0.86539 0.79424 0.87673 0.92361 0.91886 0.91787 0.93796 0.90778 0.92619 0.99394 0.97298 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.90 71.98 0.71 -1.26 16 2 C -0.02 -0.42 6.56 29.85 0.20 -0.22 16 3 C 0.18 5.12 7.60 88.34 0.67 5.79 16 4 N -0.51 -16.58 11.29 -303.83 -3.43 -20.01 16 5 C -0.04 -1.36 11.80 83.39 0.98 -0.38 16 6 C -0.03 -1.09 6.23 24.79 0.15 -0.94 16 7 C 0.13 4.78 5.44 85.56 0.47 5.24 16 8 N -0.54 -23.05 4.62 -905.38 -4.18 -27.24 16 9 C 0.06 2.51 5.74 86.30 0.50 3.00 16 10 C -0.18 -6.25 9.24 71.98 0.67 -5.59 16 11 C 0.20 10.45 4.42 85.56 0.38 10.82 16 12 C -0.52 -28.86 8.55 25.60 0.22 -28.64 16 13 H 0.06 3.18 7.10 -2.91 -0.02 3.16 16 14 C 0.01 0.40 5.46 84.65 0.46 0.86 16 15 N -0.93 -54.70 13.29 21.44 0.28 -54.42 16 16 Si 0.96 43.97 29.54 68.60 2.03 46.00 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 O -0.21 -6.69 10.50 -3.85 -0.04 -6.73 16 21 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 22 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 23 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.19 5.83 8.06 -2.91 -0.02 5.81 16 27 H 0.11 3.61 7.73 -2.39 -0.02 3.60 16 28 H 0.06 1.97 5.92 -2.38 -0.01 1.95 16 29 H 0.06 2.27 7.26 -2.39 -0.02 2.25 16 30 H 0.06 2.70 6.92 -2.39 -0.02 2.69 16 31 H 0.04 1.81 6.35 -2.39 -0.02 1.80 16 32 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.05 1.82 6.22 -2.39 -0.01 1.80 16 34 H -0.01 -0.62 5.98 -2.39 -0.01 -0.63 16 35 H 0.01 0.49 7.83 -2.39 -0.02 0.47 16 36 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -65.00 298.01 1.12 -63.89 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 1.06 Total: 9.81 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 5.40 Total: -11.31 kcal Atomic # 7 Polarization: -94.34 SS G_CDS: -7.33 Total: -101.67 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.04 Total: -6.73 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -65.00 1.12 -63.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929775856.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.190 kcal (2) G-P(sol) polarization free energy of solvation -65.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds