Wall clock time and date at job start Sun Mar 29 2020 22:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.46709 * 2 1 4 4 N 1.30253 * 125.61659 * 89.97840 * 3 2 1 5 5 C 1.34483 * 108.70100 * 179.77250 * 4 3 2 6 6 C 1.34335 * 107.66292 * 0.39351 * 5 4 3 7 7 C 1.50701 * 126.43952 * 179.87588 * 6 5 4 8 8 N 1.46901 * 109.46921 * 89.70940 * 7 6 5 9 9 C 1.46901 * 110.99975 * 66.04817 * 8 7 6 10 10 C 1.46903 * 110.99790 * 189.99765 * 8 7 6 11 11 H 1.08996 * 109.47031 * 55.00311 * 10 8 7 12 12 C 1.52999 * 109.47184 * 295.00231 * 10 8 7 13 13 C 1.50697 * 109.47058 * 175.00065 * 10 8 7 14 14 H 1.07999 * 120.00400 * 0.02562 * 13 10 8 15 15 C 1.37881 * 120.00334 * 179.97438 * 13 10 8 16 16 N 1.31515 * 119.99425 * 0.02562 * 15 13 10 17 17 Si 1.86791 * 120.00403 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47218 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47384 * 119.99978 * 17 15 13 20 20 H 1.48504 * 109.47185 * 240.00448 * 17 15 13 21 21 O 1.33967 * 125.62026 * 269.99266 * 3 2 1 22 22 H 1.09004 * 109.47653 * 299.99773 * 1 2 3 23 23 H 1.09001 * 109.47042 * 60.00350 * 1 2 3 24 24 H 1.09000 * 109.46847 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47305 * 239.99890 * 2 1 3 26 26 H 1.09001 * 109.47042 * 119.99650 * 2 1 3 27 27 H 1.07995 * 126.16830 * 180.26453 * 5 4 3 28 28 H 1.09002 * 109.47060 * 209.71121 * 7 6 5 29 29 H 1.09001 * 109.47380 * 329.71208 * 7 6 5 30 30 H 1.09001 * 109.47121 * 59.99638 * 9 8 7 31 31 H 1.09005 * 109.47342 * 179.97438 * 9 8 7 32 32 H 1.08999 * 109.46894 * 299.99652 * 9 8 7 33 33 H 1.08995 * 109.47368 * 60.00024 * 12 10 8 34 34 H 1.09004 * 109.47302 * 180.02562 * 12 10 8 35 35 H 1.09005 * 109.46983 * 300.00008 * 12 10 8 36 36 H 0.97001 * 119.99754 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2846 2.1362 1.0589 5 6 2.7183 3.3475 0.6676 6 6 2.7194 3.3658 -0.6756 7 6 3.1276 4.5196 -1.5549 8 7 4.5660 4.4328 -1.8401 9 6 4.8708 3.2484 -2.6540 10 6 5.0483 5.6578 -2.4921 11 1 4.7933 6.5210 -1.8773 12 6 4.3896 5.7976 -3.8659 13 6 6.5443 5.5832 -2.6574 14 1 7.0830 4.7127 -2.3132 15 6 7.2253 6.6258 -3.2493 16 7 6.5693 7.6855 -3.6690 17 14 9.0796 6.5330 -3.4549 18 1 9.5749 5.2456 -2.9051 19 1 9.4226 6.6193 -4.8972 20 1 9.7154 7.6602 -2.7265 21 8 2.2924 2.1564 -1.0890 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.0109 4.1599 1.3163 28 1 2.5686 4.4795 -2.4898 29 1 2.9146 5.4587 -1.0442 30 1 4.3300 3.3077 -3.5986 31 1 5.9421 3.2087 -2.8509 32 1 4.5662 2.3503 -2.1167 33 1 3.3076 5.8515 -3.7463 34 1 4.7477 6.7063 -4.3498 35 1 4.6446 4.9343 -4.4806 36 1 7.0485 8.4192 -4.0850 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929831207.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:09 Heat of formation + Delta-G solvation = 21.748134 kcal Electronic energy + Delta-G solvation = -17079.504222 eV Core-core repulsion = 14372.537512 eV Total energy + Delta-G solvation = -2706.966710 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.04900 -37.34666 -34.64936 -33.94284 -32.87022 -30.39778 -28.36868 -26.58397 -25.22431 -24.36337 -23.32298 -21.66077 -20.61451 -19.34049 -16.79260 -16.52421 -16.19214 -15.18455 -14.78106 -14.55585 -14.29589 -13.86699 -13.62216 -13.14453 -12.74499 -12.54621 -12.35878 -11.92216 -11.62554 -11.36569 -11.20369 -11.16947 -10.98446 -10.85207 -10.74915 -10.57923 -10.26071 -10.07812 -9.95662 -8.97262 -8.44358 -8.40380 -7.30697 -6.06255 -4.10124 1.72380 2.86808 2.97316 3.27855 3.35990 3.40788 4.17233 4.38611 4.82485 4.98866 5.06447 5.14178 5.20669 5.26491 5.44281 5.57029 5.58131 5.80844 5.88069 5.94052 6.11424 6.16454 6.27418 6.38839 6.59548 6.61638 6.75370 6.83058 7.01576 7.35341 7.63292 7.75601 7.97768 8.01203 8.27794 8.47797 8.95372 9.55119 11.00953 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.049634 B = 0.005007 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.989412 B = 5591.062168 C = 5692.837952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.022 4.022 3 C 0.170 3.830 4 N -0.483 5.483 5 C -0.038 4.038 6 C -0.016 4.016 7 C 0.133 3.867 8 N -0.530 5.530 9 C 0.035 3.965 10 C 0.210 3.790 11 H 0.043 0.957 12 C -0.174 4.174 13 C -0.501 4.501 14 H 0.064 0.936 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.898 3.102 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 O -0.202 6.202 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.102 0.898 27 H 0.182 0.818 28 H 0.046 0.954 29 H 0.102 0.898 30 H 0.019 0.981 31 H 0.078 0.922 32 H 0.039 0.961 33 H 0.008 0.992 34 H 0.091 0.909 35 H 0.031 0.969 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.002 -10.951 4.092 15.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.061 4.061 3 C -0.036 4.036 4 N -0.213 5.213 5 C -0.177 4.177 6 C -0.069 4.069 7 C 0.004 3.996 8 N -0.254 5.254 9 C -0.113 4.113 10 C 0.105 3.895 11 H 0.061 0.939 12 C -0.234 4.234 13 C -0.539 4.539 14 H 0.082 0.918 15 C -0.142 4.142 16 N -0.533 5.533 17 Si 0.726 3.274 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.210 1.210 21 O -0.089 6.089 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.108 0.892 26 H 0.120 0.880 27 H 0.199 0.801 28 H 0.064 0.936 29 H 0.120 0.880 30 H 0.038 0.962 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.027 0.973 34 H 0.109 0.891 35 H 0.050 0.950 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.787 -11.043 5.015 15.585 hybrid contribution 0.731 0.495 -1.607 1.834 sum -9.056 -10.548 3.408 14.314 Atomic orbital electron populations 1.21776 0.93479 1.02572 1.02880 1.19957 0.96532 0.84768 1.04799 1.26108 1.01589 0.96822 0.79131 1.70364 1.16378 1.04111 1.30398 1.22972 1.05328 0.96188 0.93167 1.23721 1.01750 0.85695 0.95741 1.20543 0.91903 0.90982 0.96127 1.62450 1.09598 1.05631 1.47717 1.22246 1.02504 0.91951 0.94645 1.19373 0.94888 0.85717 0.89522 0.93890 1.22434 0.95711 1.03402 1.01806 1.21120 0.90980 1.03626 1.38183 0.91792 1.24920 0.98549 0.95271 0.95479 1.69888 1.35329 1.07111 1.40973 0.86443 0.85279 0.78118 0.77603 1.19728 1.21150 1.20981 1.84390 1.63995 1.22853 1.37658 0.91856 0.92245 0.91200 0.89219 0.87995 0.80058 0.93612 0.88020 0.96224 0.90332 0.94222 0.97309 0.89084 0.94965 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.89 37.16 0.37 -0.87 16 2 C -0.02 -0.22 6.56 -27.88 -0.18 -0.41 16 3 C 0.17 2.55 7.60 -12.95 -0.10 2.45 16 4 N -0.48 -8.06 11.29 -11.10 -0.13 -8.18 16 5 C -0.04 -0.63 11.80 -17.77 -0.21 -0.84 16 6 C -0.02 -0.27 5.94 -35.68 -0.21 -0.48 16 7 C 0.13 2.42 4.95 -4.97 -0.02 2.39 16 8 N -0.53 -11.34 4.73 -237.73 -1.13 -12.47 16 9 C 0.03 0.71 8.60 60.07 0.52 1.23 16 10 C 0.21 5.15 2.34 -68.86 -0.16 4.99 16 11 H 0.04 1.13 8.03 -51.93 -0.42 0.72 16 12 C -0.17 -4.09 8.27 37.16 0.31 -3.79 16 13 C -0.50 -13.44 7.89 -34.44 -0.27 -13.71 16 14 H 0.06 1.74 6.77 -52.49 -0.36 1.39 16 15 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 16 N -0.89 -24.91 11.32 55.43 0.63 -24.28 16 17 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 O -0.20 -3.41 10.20 5.38 0.05 -3.35 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.18 2.71 8.06 -52.49 -0.42 2.28 16 28 H 0.05 0.83 6.94 -51.93 -0.36 0.47 16 29 H 0.10 1.72 8.00 -51.93 -0.42 1.31 16 30 H 0.02 0.39 6.51 -51.93 -0.34 0.05 16 31 H 0.08 1.69 6.41 -51.93 -0.33 1.36 16 32 H 0.04 0.76 6.83 -51.93 -0.35 0.40 16 33 H 0.01 0.17 6.75 -51.93 -0.35 -0.18 16 34 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 35 H 0.03 0.74 6.47 -51.93 -0.34 0.40 16 36 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 293.41 15.07 4.42 4.42 Total: -1.00 -29.46 293.41 -6.48 -35.94 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -5.25 Total: -0.60 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -0.06 Total: -7.55 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: -0.62 Total: -44.93 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: 0.05 Total: -3.35 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.46 -6.48 -35.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929831207.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.686 kcal (2) G-P(sol) polarization free energy of solvation -29.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds