Wall clock time and date at job start Sun Mar 29 2020 22:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.46709 * 2 1 4 4 N 1.30253 * 125.61659 * 89.97840 * 3 2 1 5 5 C 1.34483 * 108.70100 * 179.77250 * 4 3 2 6 6 C 1.34335 * 107.66292 * 0.39351 * 5 4 3 7 7 C 1.50701 * 126.43952 * 179.87588 * 6 5 4 8 8 N 1.46901 * 109.46921 * 89.70940 * 7 6 5 9 9 C 1.46901 * 110.99975 * 66.04817 * 8 7 6 10 10 C 1.46903 * 110.99790 * 189.99765 * 8 7 6 11 11 H 1.08996 * 109.47031 * 55.00311 * 10 8 7 12 12 C 1.52999 * 109.47184 * 295.00231 * 10 8 7 13 13 C 1.50697 * 109.47058 * 175.00065 * 10 8 7 14 14 H 1.07999 * 120.00400 * 0.02562 * 13 10 8 15 15 C 1.37881 * 120.00334 * 179.97438 * 13 10 8 16 16 N 1.31515 * 119.99425 * 0.02562 * 15 13 10 17 17 Si 1.86791 * 120.00403 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47218 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47384 * 119.99978 * 17 15 13 20 20 H 1.48504 * 109.47185 * 240.00448 * 17 15 13 21 21 O 1.33967 * 125.62026 * 269.99266 * 3 2 1 22 22 H 1.09004 * 109.47653 * 299.99773 * 1 2 3 23 23 H 1.09001 * 109.47042 * 60.00350 * 1 2 3 24 24 H 1.09000 * 109.46847 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47305 * 239.99890 * 2 1 3 26 26 H 1.09001 * 109.47042 * 119.99650 * 2 1 3 27 27 H 1.07995 * 126.16830 * 180.26453 * 5 4 3 28 28 H 1.09002 * 109.47060 * 209.71121 * 7 6 5 29 29 H 1.09001 * 109.47380 * 329.71208 * 7 6 5 30 30 H 1.09001 * 109.47121 * 59.99638 * 9 8 7 31 31 H 1.09005 * 109.47342 * 179.97438 * 9 8 7 32 32 H 1.08999 * 109.46894 * 299.99652 * 9 8 7 33 33 H 1.08995 * 109.47368 * 60.00024 * 12 10 8 34 34 H 1.09004 * 109.47302 * 180.02562 * 12 10 8 35 35 H 1.09005 * 109.46983 * 300.00008 * 12 10 8 36 36 H 0.97001 * 119.99754 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2846 2.1362 1.0589 5 6 2.7183 3.3475 0.6676 6 6 2.7194 3.3658 -0.6756 7 6 3.1276 4.5196 -1.5549 8 7 4.5660 4.4328 -1.8401 9 6 4.8708 3.2484 -2.6540 10 6 5.0483 5.6578 -2.4921 11 1 4.7933 6.5210 -1.8773 12 6 4.3896 5.7976 -3.8659 13 6 6.5443 5.5832 -2.6574 14 1 7.0830 4.7127 -2.3132 15 6 7.2253 6.6258 -3.2493 16 7 6.5693 7.6855 -3.6690 17 14 9.0796 6.5330 -3.4549 18 1 9.5749 5.2456 -2.9051 19 1 9.4226 6.6193 -4.8972 20 1 9.7154 7.6602 -2.7265 21 8 2.2924 2.1564 -1.0890 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.0109 4.1599 1.3163 28 1 2.5686 4.4795 -2.4898 29 1 2.9146 5.4587 -1.0442 30 1 4.3300 3.3077 -3.5986 31 1 5.9421 3.2087 -2.8509 32 1 4.5662 2.3503 -2.1167 33 1 3.3076 5.8515 -3.7463 34 1 4.7477 6.7063 -4.3498 35 1 4.6446 4.9343 -4.4806 36 1 7.0485 8.4192 -4.0850 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929831207.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:09 Heat of formation + Delta-G solvation = 1.096067 kcal Electronic energy + Delta-G solvation = -17080.399763 eV Core-core repulsion = 14372.537512 eV Total energy + Delta-G solvation = -2707.862251 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.30238 -39.06904 -35.83095 -35.15751 -34.56750 -31.91750 -30.07236 -28.00993 -27.18840 -25.71324 -24.57709 -22.97654 -21.84446 -21.09864 -18.34690 -17.87534 -17.82769 -16.92179 -16.05615 -15.94195 -15.84011 -15.26611 -14.79829 -14.60536 -14.40136 -13.81436 -13.53354 -13.45955 -12.96601 -12.93937 -12.68662 -12.60318 -12.57746 -12.35296 -12.26137 -12.04218 -12.03585 -11.85663 -11.53349 -10.95361 -10.50455 -9.70278 -9.00002 -8.11972 -6.22334 0.46635 1.41734 1.44476 1.55339 1.65825 1.73838 2.43313 3.10586 3.17880 3.41361 3.78052 4.08720 4.11449 4.27153 4.36372 4.41099 4.47735 4.55918 4.65316 4.75249 4.85164 4.90381 4.97189 5.00385 5.08975 5.10157 5.10695 5.28339 5.44055 5.49364 5.68360 5.75066 6.11390 6.38444 6.60115 6.75430 6.89024 7.46565 8.94276 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.049634 B = 0.005007 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.989412 B = 5591.062168 C = 5692.837952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.025 4.025 3 C 0.182 3.818 4 N -0.508 5.508 5 C -0.038 4.038 6 C -0.036 4.036 7 C 0.139 3.861 8 N -0.540 5.540 9 C 0.045 3.955 10 C 0.215 3.785 11 H 0.019 0.981 12 C -0.161 4.161 13 C -0.516 4.516 14 H 0.055 0.945 15 C 0.015 3.985 16 N -0.918 5.918 17 Si 0.957 3.043 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.281 1.281 21 O -0.212 6.212 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.099 0.901 25 H 0.109 0.891 26 H 0.117 0.883 27 H 0.193 0.807 28 H 0.049 0.951 29 H 0.110 0.890 30 H 0.022 0.978 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.030 0.970 34 H 0.065 0.935 35 H 0.031 0.969 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.409 -12.517 4.300 16.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.063 4.063 3 C -0.025 4.025 4 N -0.238 5.238 5 C -0.177 4.177 6 C -0.089 4.089 7 C 0.011 3.989 8 N -0.264 5.264 9 C -0.104 4.104 10 C 0.109 3.891 11 H 0.037 0.963 12 C -0.220 4.220 13 C -0.554 4.554 14 H 0.073 0.927 15 C -0.184 4.184 16 N -0.558 5.558 17 Si 0.784 3.216 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.207 1.207 21 O -0.100 6.100 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.118 0.882 25 H 0.127 0.873 26 H 0.136 0.864 27 H 0.210 0.790 28 H 0.067 0.933 29 H 0.128 0.872 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.204 -12.615 5.235 17.049 hybrid contribution 0.779 0.895 -1.615 2.004 sum -9.424 -11.720 3.620 15.469 Atomic orbital electron populations 1.21760 0.92070 1.04288 1.02066 1.20340 0.97579 0.81880 1.06511 1.27251 0.99050 0.97939 0.78222 1.70417 1.17850 1.04348 1.31175 1.23246 1.04465 0.96699 0.93257 1.23443 1.03714 0.86078 0.95662 1.20462 0.89785 0.92080 0.96568 1.62310 1.12010 1.04665 1.47452 1.22130 1.01434 0.91976 0.94811 1.19131 0.94046 0.86272 0.89658 0.96306 1.22235 0.96919 1.01920 1.00941 1.21361 0.92454 1.03398 1.38224 0.92677 1.25625 1.02506 0.94996 0.95258 1.69998 1.36763 1.07583 1.41424 0.85510 0.80503 0.78031 0.77595 1.19497 1.20655 1.20675 1.84386 1.64311 1.22818 1.38463 0.92816 0.92905 0.88230 0.87278 0.86448 0.78971 0.93330 0.87242 0.95949 0.91978 0.93016 0.95135 0.91644 0.95037 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.89 71.98 0.71 -1.29 16 2 C -0.03 -0.43 6.56 29.85 0.20 -0.23 16 3 C 0.18 5.11 7.60 88.34 0.67 5.78 16 4 N -0.51 -16.29 11.29 -303.83 -3.43 -19.72 16 5 C -0.04 -1.26 11.80 83.39 0.98 -0.27 16 6 C -0.04 -1.22 5.94 24.79 0.15 -1.07 16 7 C 0.14 4.97 4.95 85.56 0.42 5.39 16 8 N -0.54 -23.00 4.73 -906.03 -4.29 -27.29 16 9 C 0.04 1.80 8.60 127.69 1.10 2.89 16 10 C 0.22 10.61 2.34 44.17 0.10 10.71 16 11 H 0.02 1.02 8.03 -2.39 -0.02 1.00 16 12 C -0.16 -7.55 8.27 71.98 0.60 -6.95 16 13 C -0.52 -27.92 7.89 25.60 0.20 -27.72 16 14 H 0.06 3.02 6.77 -2.91 -0.02 3.00 16 15 C 0.01 0.81 5.30 84.66 0.45 1.26 16 16 N -0.92 -51.53 11.32 21.45 0.24 -51.29 16 17 Si 0.96 43.27 29.54 68.60 2.03 45.30 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 O -0.21 -6.83 10.20 -3.67 -0.04 -6.87 16 22 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.19 5.61 8.06 -2.91 -0.02 5.59 16 28 H 0.05 1.70 6.94 -2.39 -0.02 1.68 16 29 H 0.11 3.67 8.00 -2.39 -0.02 3.65 16 30 H 0.02 0.87 6.51 -2.39 -0.02 0.85 16 31 H 0.06 2.66 6.41 -2.38 -0.02 2.65 16 32 H 0.05 1.92 6.83 -2.39 -0.02 1.91 16 33 H 0.03 1.25 6.75 -2.39 -0.02 1.23 16 34 H 0.06 3.43 6.07 -2.39 -0.01 3.41 16 35 H 0.03 1.43 6.47 -2.38 -0.02 1.42 16 36 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -62.14 293.41 1.16 -60.99 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 1.06 Total: 10.36 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 5.58 Total: -11.48 kcal Atomic # 7 Polarization: -90.81 SS G_CDS: -7.48 Total: -98.29 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.04 Total: -6.87 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -62.14 1.16 -60.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929831207.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.084 kcal (2) G-P(sol) polarization free energy of solvation -62.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds