Wall clock time and date at job start Sun Mar 29 2020 21:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46760 * 245.67257 * 3 2 1 5 5 H 1.09000 * 109.47160 * 304.99656 * 4 3 2 6 6 O 1.42895 * 109.47485 * 65.00256 * 4 3 2 7 7 C 1.53006 * 109.46626 * 185.00025 * 4 3 2 8 8 N 1.46902 * 109.46626 * 179.97438 * 7 4 3 9 9 C 1.46852 * 110.99931 * 294.20338 * 8 7 4 10 10 C 1.53038 * 109.52166 * 174.16462 * 9 8 7 11 11 C 1.53111 * 109.27933 * 59.17985 * 10 9 8 12 12 C 1.53113 * 109.16361 * 302.34846 * 11 10 9 13 13 H 1.09000 * 109.50089 * 297.70933 * 12 11 10 14 14 C 1.50703 * 109.50474 * 177.59220 * 12 11 10 15 15 H 1.07999 * 120.00309 * 240.19292 * 14 12 11 16 16 C 1.37878 * 119.99921 * 60.19503 * 14 12 11 17 17 N 1.31518 * 119.99979 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 120.00180 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46815 * 89.99955 * 18 16 14 20 20 H 1.48493 * 109.47098 * 210.00252 * 18 16 14 21 21 H 1.48501 * 109.46992 * 330.00137 * 18 16 14 22 22 C 1.46845 * 110.99560 * 170.00278 * 8 7 4 23 23 H 1.08993 * 109.47021 * 125.66750 * 3 2 1 24 24 H 1.09005 * 109.46566 * 5.66864 * 3 2 1 25 25 H 0.96698 * 114.00355 * 59.99419 * 6 4 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 7 4 3 27 27 H 1.09001 * 109.46801 * 59.99811 * 7 4 3 28 28 H 1.08996 * 109.46717 * 294.18527 * 9 8 7 29 29 H 1.09002 * 109.45810 * 54.15580 * 9 8 7 30 30 H 1.09009 * 109.50306 * 299.24202 * 10 9 8 31 31 H 1.09000 * 109.50216 * 179.12976 * 10 9 8 32 32 H 1.09005 * 109.52274 * 182.44059 * 11 10 9 33 33 H 1.09006 * 109.57061 * 62.28360 * 11 10 9 34 34 H 0.97005 * 119.99879 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.46228 * 305.85144 * 22 8 7 36 36 H 1.09001 * 109.47085 * 65.82947 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.5951 1.3144 5 1 2.6826 1.5841 1.4588 6 8 2.7400 -0.2544 2.3996 7 6 4.6425 0.7111 1.2643 8 7 5.1318 1.2825 2.5261 9 6 4.6758 2.6690 2.6877 10 6 5.0793 3.1820 4.0720 11 6 6.6018 3.1057 4.2154 12 6 7.0556 1.6601 3.9947 13 1 6.6176 1.0202 4.7608 14 6 8.5586 1.5866 4.0756 15 1 9.1289 1.2401 3.2264 16 6 9.2058 1.9617 5.2338 17 7 8.5114 2.3831 6.2682 18 14 11.0690 1.8713 5.3340 19 1 11.6519 3.1613 4.8851 20 1 11.4769 1.6052 6.7367 21 1 11.5591 0.7757 4.4595 22 6 6.5948 1.1912 2.6126 23 1 2.9710 0.6000 -0.8348 24 1 2.9717 -1.0219 -0.1015 25 1 3.0926 -1.1527 2.3370 26 1 5.0775 -0.2778 1.1199 27 1 4.9305 1.3592 0.4365 28 1 5.1340 3.2938 1.9211 29 1 3.5911 2.7086 2.5878 30 1 4.6102 2.5660 4.8393 31 1 4.7543 4.2162 4.1858 32 1 6.8901 3.4293 5.2155 33 1 7.0712 3.7521 3.4738 34 1 8.9667 2.6474 7.0829 35 1 6.9040 0.1575 2.4581 36 1 7.0442 1.8230 1.8465 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930923743.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:33 Heat of formation + Delta-G solvation = -33.074022 kcal Electronic energy + Delta-G solvation = -17066.654556 eV Core-core repulsion = 14357.310579 eV Total energy + Delta-G solvation = -2709.343977 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.98362 -37.39602 -36.12906 -33.66131 -32.07318 -31.09049 -29.87295 -26.69798 -24.98401 -22.87516 -21.81727 -20.72374 -18.63063 -18.10570 -16.36971 -16.26547 -15.80952 -15.06965 -14.93026 -14.32453 -14.26230 -13.45946 -13.39888 -13.00857 -12.83935 -12.60155 -12.30308 -12.22339 -11.80126 -11.65927 -11.36917 -11.01708 -10.93611 -10.71133 -10.62055 -10.13596 -10.05029 -9.82746 -9.45283 -9.02021 -8.70511 -8.30019 -7.67367 -5.97235 -4.03795 2.59811 2.64994 3.30372 3.37581 3.39808 3.72381 4.24321 4.42906 4.49086 4.76547 4.89244 5.09135 5.24222 5.28693 5.32921 5.62630 5.74628 5.81236 5.94278 6.07242 6.26724 6.37785 6.49541 6.72390 6.75672 6.95740 7.22666 7.38388 7.42959 7.62954 7.67788 7.75418 7.82065 8.08841 8.18224 8.47630 9.00477 9.60606 11.08642 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.052480 B = 0.004889 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.407441 B = 5725.687173 C = 5959.008399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.214 3.786 3 C -0.062 4.062 4 C 0.115 3.885 5 H 0.103 0.897 6 O -0.541 6.541 7 C 0.023 3.977 8 N -0.527 5.527 9 C 0.061 3.939 10 C -0.117 4.117 11 C -0.111 4.111 12 C 0.055 3.945 13 H 0.035 0.965 14 C -0.516 4.516 15 H 0.053 0.947 16 C 0.063 3.937 17 N -0.887 5.887 18 Si 0.890 3.110 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.068 3.932 23 H 0.117 0.883 24 H 0.113 0.887 25 H 0.374 0.626 26 H 0.079 0.921 27 H 0.039 0.961 28 H 0.022 0.978 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.090 0.910 33 H 0.029 0.971 34 H 0.260 0.740 35 H 0.059 0.941 36 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.709 -2.882 -10.939 13.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.104 4.104 3 C -0.103 4.103 4 C 0.054 3.946 5 H 0.121 0.879 6 O -0.346 6.346 7 C -0.106 4.106 8 N -0.252 5.252 9 C -0.067 4.067 10 C -0.155 4.155 11 C -0.149 4.149 12 C 0.036 3.964 13 H 0.053 0.947 14 C -0.555 4.555 15 H 0.071 0.929 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.718 3.282 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.058 4.058 23 H 0.135 0.865 24 H 0.131 0.869 25 H 0.221 0.779 26 H 0.097 0.903 27 H 0.057 0.943 28 H 0.040 0.960 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -8.888 -2.558 -10.171 13.747 hybrid contribution 2.185 0.037 -0.873 2.353 sum -6.704 -2.521 -11.044 13.163 Atomic orbital electron populations 1.81205 1.13088 1.08627 1.08730 1.28943 0.95089 0.93348 0.93011 1.20134 0.82492 1.05495 1.02149 1.21916 0.94122 0.94961 0.83602 0.87885 1.86672 1.75909 1.25896 1.46076 1.22750 0.94279 1.00941 0.92630 1.61904 1.13127 1.18915 1.31228 1.22084 0.98422 0.88107 0.98058 1.21660 0.99802 0.98504 0.95531 1.21653 0.90465 0.99565 1.03199 1.18660 0.94630 0.92752 0.90356 0.94669 1.21143 0.91570 1.43852 0.98908 0.92888 1.24936 0.97968 0.95209 0.95709 1.69897 1.34943 1.44252 1.03501 0.86638 0.86088 0.78286 0.77213 1.20821 1.21258 1.19982 1.22327 0.83422 0.99586 1.00494 0.86482 0.86927 0.77865 0.90304 0.94324 0.96010 0.92275 0.91938 0.93631 0.89183 0.95249 0.93049 0.92275 0.96359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.06 18.54 42.15 0.78 -5.28 16 2 C 0.21 2.23 15.19 -20.76 -0.32 1.91 16 3 C -0.06 -0.39 5.39 -29.52 -0.16 -0.55 16 4 C 0.12 1.13 2.81 -26.73 -0.08 1.06 16 5 H 0.10 1.14 6.43 -51.93 -0.33 0.80 16 6 O -0.54 -6.51 12.94 -35.23 -0.46 -6.97 16 7 C 0.02 0.26 4.62 -3.82 -0.02 0.25 16 8 N -0.53 -8.76 4.52 -234.66 -1.06 -9.82 16 9 C 0.06 1.01 5.29 -3.83 -0.02 0.99 16 10 C -0.12 -2.26 6.09 -26.65 -0.16 -2.42 16 11 C -0.11 -2.57 5.03 -26.62 -0.13 -2.70 16 12 C 0.05 1.33 2.26 -91.69 -0.21 1.12 16 13 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 14 C -0.52 -13.79 8.56 -34.44 -0.29 -14.08 16 15 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 16 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 17 N -0.89 -25.04 11.36 55.43 0.63 -24.41 16 18 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 C 0.07 1.35 4.68 -3.83 -0.02 1.33 16 23 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.37 3.15 9.05 45.56 0.41 3.56 16 26 H 0.08 0.79 7.99 -51.93 -0.41 0.37 16 27 H 0.04 0.40 8.12 -51.93 -0.42 -0.02 16 28 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.87 6.21 -51.93 -0.32 0.55 16 30 H 0.06 1.28 8.14 -51.92 -0.42 0.85 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 2.36 6.17 -51.93 -0.32 2.04 16 33 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.06 1.13 8.02 -51.93 -0.42 0.72 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 296.63 15.07 4.47 4.47 Total: -1.00 -31.53 296.63 -6.90 -38.42 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -4.74 Total: -0.80 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -1.50 Total: -11.47 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.35 Total: -39.51 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.46 Total: -6.97 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.53 -6.90 -38.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930923743.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.350 kcal (2) G-P(sol) polarization free energy of solvation -31.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds