Wall clock time and date at job start Sun Mar 29 2020 21:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46760 * 245.67257 * 3 2 1 5 5 H 1.09000 * 109.47160 * 304.99656 * 4 3 2 6 6 O 1.42895 * 109.47485 * 65.00256 * 4 3 2 7 7 C 1.53006 * 109.46626 * 185.00025 * 4 3 2 8 8 N 1.46902 * 109.46626 * 179.97438 * 7 4 3 9 9 C 1.46852 * 110.99931 * 294.20338 * 8 7 4 10 10 C 1.53038 * 109.52166 * 174.16462 * 9 8 7 11 11 C 1.53111 * 109.27933 * 59.17985 * 10 9 8 12 12 C 1.53113 * 109.16361 * 302.34846 * 11 10 9 13 13 H 1.09000 * 109.50089 * 297.70933 * 12 11 10 14 14 C 1.50703 * 109.50474 * 177.59220 * 12 11 10 15 15 H 1.07999 * 120.00309 * 240.19292 * 14 12 11 16 16 C 1.37878 * 119.99921 * 60.19503 * 14 12 11 17 17 N 1.31518 * 119.99979 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 120.00180 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46815 * 89.99955 * 18 16 14 20 20 H 1.48493 * 109.47098 * 210.00252 * 18 16 14 21 21 H 1.48501 * 109.46992 * 330.00137 * 18 16 14 22 22 C 1.46845 * 110.99560 * 170.00278 * 8 7 4 23 23 H 1.08993 * 109.47021 * 125.66750 * 3 2 1 24 24 H 1.09005 * 109.46566 * 5.66864 * 3 2 1 25 25 H 0.96698 * 114.00355 * 59.99419 * 6 4 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 7 4 3 27 27 H 1.09001 * 109.46801 * 59.99811 * 7 4 3 28 28 H 1.08996 * 109.46717 * 294.18527 * 9 8 7 29 29 H 1.09002 * 109.45810 * 54.15580 * 9 8 7 30 30 H 1.09009 * 109.50306 * 299.24202 * 10 9 8 31 31 H 1.09000 * 109.50216 * 179.12976 * 10 9 8 32 32 H 1.09005 * 109.52274 * 182.44059 * 11 10 9 33 33 H 1.09006 * 109.57061 * 62.28360 * 11 10 9 34 34 H 0.97005 * 119.99879 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.46228 * 305.85144 * 22 8 7 36 36 H 1.09001 * 109.47085 * 65.82947 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.5951 1.3144 5 1 2.6826 1.5841 1.4588 6 8 2.7400 -0.2544 2.3996 7 6 4.6425 0.7111 1.2643 8 7 5.1318 1.2825 2.5261 9 6 4.6758 2.6690 2.6877 10 6 5.0793 3.1820 4.0720 11 6 6.6018 3.1057 4.2154 12 6 7.0556 1.6601 3.9947 13 1 6.6176 1.0202 4.7608 14 6 8.5586 1.5866 4.0756 15 1 9.1289 1.2401 3.2264 16 6 9.2058 1.9617 5.2338 17 7 8.5114 2.3831 6.2682 18 14 11.0690 1.8713 5.3340 19 1 11.6519 3.1613 4.8851 20 1 11.4769 1.6052 6.7367 21 1 11.5591 0.7757 4.4595 22 6 6.5948 1.1912 2.6126 23 1 2.9710 0.6000 -0.8348 24 1 2.9717 -1.0219 -0.1015 25 1 3.0926 -1.1527 2.3370 26 1 5.0775 -0.2778 1.1199 27 1 4.9305 1.3592 0.4365 28 1 5.1340 3.2938 1.9211 29 1 3.5911 2.7086 2.5878 30 1 4.6102 2.5660 4.8393 31 1 4.7543 4.2162 4.1858 32 1 6.8901 3.4293 5.2155 33 1 7.0712 3.7521 3.4738 34 1 8.9667 2.6474 7.0829 35 1 6.9040 0.1575 2.4581 36 1 7.0442 1.8230 1.8465 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930923743.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:33 Heat of formation + Delta-G solvation = -56.632436 kcal Electronic energy + Delta-G solvation = -17067.676126 eV Core-core repulsion = 14357.310579 eV Total energy + Delta-G solvation = -2710.365546 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.13012 -38.52558 -37.07027 -35.34446 -33.50713 -32.12449 -31.57945 -27.77214 -26.86157 -24.15763 -23.34824 -21.92072 -20.29959 -19.00016 -18.22742 -17.07025 -16.72998 -16.49938 -16.20857 -15.76807 -15.31752 -14.88877 -14.61546 -14.41299 -14.20437 -13.92167 -13.58149 -13.48100 -13.15283 -12.81326 -12.66403 -12.50957 -12.40744 -12.28734 -11.87375 -11.70474 -11.59582 -11.32685 -11.00826 -10.64852 -10.59182 -10.31643 -8.94481 -8.03719 -6.17973 1.44123 1.45015 1.54866 1.81160 1.89969 2.46125 2.96832 3.23562 3.29478 3.77404 3.97140 4.12920 4.23650 4.37502 4.38993 4.52132 4.63028 4.72110 4.80029 4.86594 4.89737 4.97808 5.05831 5.17707 5.20419 5.27358 5.46045 5.58437 5.68046 6.03293 6.18857 6.28073 6.48643 6.52693 6.69127 6.96867 7.07934 7.50336 9.00757 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.052480 B = 0.004889 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.407441 B = 5725.687173 C = 5959.008399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C 0.239 3.761 3 C -0.050 4.050 4 C 0.120 3.880 5 H 0.090 0.910 6 O -0.571 6.571 7 C 0.023 3.977 8 N -0.543 5.543 9 C 0.066 3.934 10 C -0.113 4.113 11 C -0.104 4.104 12 C 0.050 3.950 13 H -0.007 1.007 14 C -0.533 4.533 15 H 0.055 0.945 16 C 0.011 3.989 17 N -0.918 5.918 18 Si 0.953 3.047 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.265 1.265 22 C 0.084 3.916 23 H 0.153 0.847 24 H 0.148 0.852 25 H 0.388 0.612 26 H 0.098 0.902 27 H 0.060 0.940 28 H 0.031 0.969 29 H 0.083 0.917 30 H 0.043 0.957 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.024 0.976 34 H 0.258 0.742 35 H 0.063 0.937 36 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.307 -3.397 -13.263 15.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C -0.077 4.077 3 C -0.090 4.090 4 C 0.059 3.941 5 H 0.108 0.892 6 O -0.378 6.378 7 C -0.105 4.105 8 N -0.268 5.268 9 C -0.061 4.061 10 C -0.150 4.150 11 C -0.142 4.142 12 C 0.031 3.969 13 H 0.011 0.989 14 C -0.572 4.572 15 H 0.074 0.926 16 C -0.187 4.187 17 N -0.558 5.558 18 Si 0.779 3.221 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.044 4.044 23 H 0.171 0.829 24 H 0.166 0.834 25 H 0.238 0.762 26 H 0.116 0.884 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -8.491 -3.088 -12.519 15.440 hybrid contribution 2.070 0.187 -0.118 2.082 sum -6.422 -2.902 -12.637 14.469 Atomic orbital electron populations 1.81235 1.15389 1.11109 1.10931 1.29665 0.95781 0.91247 0.91005 1.20308 0.79517 1.08040 1.01117 1.21835 0.92924 0.94566 0.84735 0.89183 1.86640 1.76414 1.27198 1.47538 1.22883 0.95116 1.01922 0.90558 1.61773 1.10868 1.19089 1.35058 1.22022 0.99834 0.88312 0.95967 1.21576 0.96581 0.99572 0.97316 1.21455 0.93391 0.98690 1.00660 1.18600 0.93444 0.92653 0.92183 0.98877 1.21572 0.93206 1.43409 0.98980 0.92640 1.25747 1.02440 0.95024 0.95504 1.70062 1.36600 1.45167 1.03939 0.85631 0.80765 0.78557 0.77135 1.20306 1.21299 1.18939 1.21951 0.85765 0.99467 0.97171 0.82929 0.83447 0.76239 0.88383 0.92143 0.95066 0.89926 0.93817 0.91861 0.92983 0.95764 0.93261 0.91818 0.96315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -13.51 18.54 20.01 0.37 -13.14 16 2 C 0.24 4.37 15.19 89.44 1.36 5.73 16 3 C -0.05 -0.40 5.39 28.79 0.16 -0.24 16 4 C 0.12 1.93 2.81 30.60 0.09 2.01 16 5 H 0.09 1.69 6.43 -2.39 -0.02 1.67 16 6 O -0.57 -12.35 12.94 -148.98 -1.93 -14.28 16 7 C 0.02 0.43 4.62 86.31 0.40 0.83 16 8 N -0.54 -16.86 4.52 -896.33 -4.06 -20.91 16 9 C 0.07 2.06 5.29 86.33 0.46 2.51 16 10 C -0.11 -4.33 6.09 30.64 0.19 -4.14 16 11 C -0.10 -4.93 5.03 30.67 0.15 -4.78 16 12 C 0.05 2.48 2.26 -11.49 -0.03 2.45 16 13 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 14 C -0.53 -28.85 8.56 25.60 0.22 -28.63 16 15 H 0.06 2.89 7.74 -2.91 -0.02 2.87 16 16 C 0.01 0.62 5.30 84.65 0.45 1.07 16 17 N -0.92 -53.52 11.36 21.45 0.24 -53.28 16 18 Si 0.95 43.10 29.54 68.60 2.03 45.13 16 19 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 20 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 22 C 0.08 3.21 4.68 86.33 0.40 3.61 16 23 H 0.15 0.29 8.14 -2.39 -0.02 0.27 16 24 H 0.15 0.30 8.14 -2.38 -0.02 0.28 16 25 H 0.39 5.51 9.05 -74.06 -0.67 4.84 16 26 H 0.10 1.49 7.99 -2.39 -0.02 1.47 16 27 H 0.06 0.93 8.12 -2.39 -0.02 0.92 16 28 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 2.21 6.21 -2.39 -0.01 2.20 16 30 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.05 2.85 6.17 -2.38 -0.01 2.83 16 33 H 0.02 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 35 H 0.06 2.34 8.02 -2.39 -0.02 2.32 16 36 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -71.92 296.63 0.90 -71.02 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: 0.40 Total: 5.03 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: 3.84 Total: -19.56 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -3.44 Total: -87.33 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -1.93 Total: -14.28 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -71.92 0.90 -71.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930923743.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.391 kcal (2) G-P(sol) polarization free energy of solvation -71.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds