Wall clock time and date at job start Sun Mar 29 2020 21:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47380 * 249.86997 * 3 2 1 5 5 H 1.09005 * 109.46778 * 305.00128 * 4 3 2 6 6 O 1.42896 * 109.47111 * 64.99987 * 4 3 2 7 7 C 1.52995 * 109.47263 * 185.00604 * 4 3 2 8 8 N 1.46903 * 109.46899 * 180.66555 * 7 4 3 9 9 C 1.46846 * 111.00051 * 169.66469 * 8 7 4 10 10 C 1.53035 * 109.52384 * 185.83571 * 9 8 7 11 11 C 1.53117 * 109.27712 * 300.81871 * 10 9 8 12 12 C 1.53123 * 109.16082 * 57.66048 * 11 10 9 13 13 H 1.08999 * 109.53671 * 62.30071 * 12 11 10 14 14 C 1.50697 * 109.50197 * 182.40304 * 12 11 10 15 15 H 1.07999 * 119.99873 * 119.80102 * 14 12 11 16 16 C 1.37877 * 120.00044 * 299.79505 * 14 12 11 17 17 N 1.31512 * 119.99983 * 180.02562 * 16 14 12 18 18 Si 1.86796 * 119.99992 * 0.02562 * 16 14 12 19 19 H 1.48498 * 109.46991 * 89.99743 * 18 16 14 20 20 H 1.48501 * 109.47173 * 209.99738 * 18 16 14 21 21 H 1.48502 * 109.46978 * 329.99783 * 18 16 14 22 22 C 1.46846 * 110.99802 * 293.87433 * 8 7 4 23 23 H 1.09002 * 109.47468 * 9.86702 * 3 2 1 24 24 H 1.09005 * 109.47245 * 129.87237 * 3 2 1 25 25 H 0.96697 * 114.00424 * 60.00121 * 6 4 3 26 26 H 1.09001 * 109.47128 * 300.65630 * 7 4 3 27 27 H 1.08999 * 109.47660 * 60.65956 * 7 4 3 28 28 H 1.08995 * 109.46536 * 305.85410 * 9 8 7 29 29 H 1.09003 * 109.46156 * 65.81802 * 9 8 7 30 30 H 1.09005 * 109.50477 * 180.87966 * 10 9 8 31 31 H 1.08998 * 109.50622 * 60.76128 * 10 9 8 32 32 H 1.08999 * 109.52884 * 297.74659 * 11 10 9 33 33 H 1.09008 * 109.57163 * 177.59170 * 11 10 9 34 34 H 0.97003 * 120.00184 * 180.02562 * 17 16 14 35 35 H 1.09002 * 109.46330 * 294.17892 * 22 8 7 36 36 H 1.09001 * 109.46673 * 54.15589 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1179 0.4973 1.3544 5 1 2.6828 1.4731 1.5708 6 8 2.7403 -0.4294 2.3745 7 6 4.6426 0.6168 1.3128 8 7 5.1333 1.0784 2.6182 9 6 6.5958 0.9723 2.6981 10 6 7.0573 1.3220 4.1147 11 6 6.6109 2.7467 4.4545 12 6 5.0889 2.8429 4.3169 13 1 4.6151 2.1682 5.0299 14 6 4.6472 4.2571 4.5923 15 1 4.1296 4.8194 3.8292 16 6 4.9039 4.8331 5.8184 17 7 4.5179 6.0671 6.0589 18 14 5.7996 3.8607 7.1380 19 1 7.2625 4.0798 7.0071 20 1 5.3492 4.3139 8.4785 21 1 5.4993 2.4152 6.9773 22 6 4.6845 2.4491 2.8944 23 1 2.9719 -1.0116 -0.1761 24 1 2.9711 0.6597 -0.7887 25 1 3.0928 -1.3206 2.2463 26 1 5.0772 -0.3564 1.0848 27 1 4.9301 1.3325 0.5426 28 1 6.8997 -0.0466 2.4583 29 1 7.0494 1.6632 1.9874 30 1 8.1441 1.2583 4.1696 31 1 6.6149 0.6230 4.8245 32 1 7.0839 3.4499 3.7691 33 1 6.8999 2.9855 5.4781 34 1 4.6988 6.4725 6.9214 35 1 5.1471 3.1331 2.1828 36 1 3.6002 2.5028 2.7973 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930923747.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:35 Heat of formation + Delta-G solvation = -24.827199 kcal Electronic energy + Delta-G solvation = -17261.942585 eV Core-core repulsion = 14552.956217 eV Total energy + Delta-G solvation = -2708.986368 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.10466 -37.53468 -36.11004 -33.73329 -32.26619 -31.22752 -30.30294 -26.90846 -25.02731 -23.36932 -21.28003 -21.12063 -18.90703 -18.11377 -16.66996 -16.24716 -15.87735 -15.45453 -14.98982 -14.48998 -14.06357 -13.78528 -13.34702 -13.12936 -12.88725 -12.75825 -12.57479 -12.37851 -12.05771 -11.75199 -11.58648 -11.15972 -11.04611 -10.93681 -10.48826 -10.13750 -10.04089 -9.84931 -9.65311 -9.10190 -8.90990 -8.48815 -7.84822 -6.04399 -4.03421 2.65684 2.71467 3.30332 3.42431 3.46041 3.75271 4.18248 4.45185 4.45366 4.76459 4.88131 5.06583 5.21513 5.24875 5.27331 5.43361 5.48035 5.62695 5.77238 5.93947 5.97220 6.12819 6.27965 6.29931 6.44924 6.61800 6.80153 6.84108 7.22061 7.37102 7.48732 7.53619 7.68060 7.73843 7.87894 8.54226 8.98538 9.58618 11.08910 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.028247 B = 0.006516 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.015844 B = 4296.080505 C = 4880.153322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C 0.212 3.788 3 C -0.060 4.060 4 C 0.113 3.887 5 H 0.110 0.890 6 O -0.538 6.538 7 C 0.026 3.974 8 N -0.532 5.532 9 C 0.065 3.935 10 C -0.120 4.120 11 C -0.123 4.123 12 C 0.020 3.980 13 H 0.037 0.963 14 C -0.514 4.514 15 H 0.072 0.928 16 C 0.070 3.930 17 N -0.903 5.903 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.299 1.299 21 H -0.263 1.263 22 C 0.075 3.925 23 H 0.111 0.889 24 H 0.117 0.883 25 H 0.370 0.630 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.062 0.938 29 H 0.027 0.973 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.263 0.737 35 H 0.025 0.975 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.519 -13.707 -11.260 18.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.113 5.113 2 C -0.106 4.106 3 C -0.101 4.101 4 C 0.052 3.948 5 H 0.128 0.872 6 O -0.342 6.342 7 C -0.103 4.103 8 N -0.256 5.256 9 C -0.063 4.063 10 C -0.158 4.158 11 C -0.160 4.160 12 C 0.001 3.999 13 H 0.055 0.945 14 C -0.552 4.552 15 H 0.090 0.910 16 C -0.131 4.131 17 N -0.541 5.541 18 Si 0.718 3.282 19 H -0.208 1.208 20 H -0.226 1.226 21 H -0.187 1.187 22 C -0.052 4.052 23 H 0.129 0.871 24 H 0.135 0.865 25 H 0.216 0.784 26 H 0.093 0.907 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.044 0.956 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.295 -13.338 -10.540 17.154 hybrid contribution 1.692 -0.213 -0.125 1.710 sum 3.987 -13.551 -10.664 17.699 Atomic orbital electron populations 1.81216 1.13067 1.08487 1.08518 1.28887 0.95058 0.93466 0.93174 1.20095 0.82677 1.05473 1.01806 1.21949 0.93784 0.94666 0.84401 0.87231 1.86741 1.75875 1.22837 1.48700 1.22711 0.94859 1.00790 0.91986 1.61905 1.10346 1.25811 1.27584 1.21976 0.87520 0.99424 0.97364 1.21649 0.98874 0.99132 0.96102 1.22030 1.00000 0.93934 1.00076 1.19145 0.91024 0.97234 0.92482 0.94518 1.21000 1.37577 0.96455 1.00197 0.91034 1.24981 0.95316 0.94650 0.98159 1.69901 1.47268 1.13342 1.23614 0.86824 0.79469 0.81264 0.80611 1.20775 1.22649 1.18742 1.22151 0.99571 0.84773 0.98696 0.87138 0.86464 0.78365 0.90660 0.93978 0.91937 0.95455 0.92835 0.91740 0.92630 0.93572 0.92720 0.95627 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.44 18.54 42.15 0.78 -5.65 16 2 C 0.21 2.37 15.19 -20.76 -0.32 2.06 16 3 C -0.06 -0.39 5.39 -29.52 -0.16 -0.55 16 4 C 0.11 1.17 2.81 -26.73 -0.08 1.09 16 5 H 0.11 1.41 6.47 -51.93 -0.34 1.08 16 6 O -0.54 -6.60 12.93 -35.23 -0.46 -7.05 16 7 C 0.03 0.26 4.63 -3.83 -0.02 0.25 16 8 N -0.53 -8.12 4.51 -234.67 -1.06 -9.17 16 9 C 0.06 0.93 5.46 -3.84 -0.02 0.91 16 10 C -0.12 -2.00 6.09 -26.65 -0.16 -2.16 16 11 C -0.12 -2.59 4.74 -26.61 -0.13 -2.71 16 12 C 0.02 0.47 1.85 -91.69 -0.17 0.30 16 13 H 0.04 0.92 7.20 -51.93 -0.37 0.54 16 14 C -0.51 -14.32 9.14 -34.44 -0.31 -14.63 16 15 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 16 C 0.07 2.03 5.45 -17.82 -0.10 1.94 16 17 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 18 Si 0.89 22.18 24.36 -169.99 -4.14 18.04 16 19 H -0.28 -6.79 6.89 56.52 0.39 -6.40 16 20 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 21 H -0.26 -6.35 6.53 56.52 0.37 -5.98 16 22 C 0.07 1.43 4.52 -3.83 -0.02 1.41 16 23 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.37 2.90 9.05 45.56 0.41 3.31 16 26 H 0.07 0.58 7.98 -51.93 -0.41 0.17 16 27 H 0.04 0.40 8.12 -51.93 -0.42 -0.02 16 28 H 0.06 0.73 8.01 -51.93 -0.42 0.32 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.05 1.04 3.37 -51.92 -0.17 0.87 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 1.35 6.24 -51.93 -0.32 1.02 16 LS Contribution 289.80 15.07 4.37 4.37 Total: -1.00 -34.09 289.80 -5.81 -39.90 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -4.61 Total: -1.33 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -1.48 Total: -12.10 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.50 Total: -41.82 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.46 Total: -7.05 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.14 Total: 18.04 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -34.09 -5.81 -39.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930923747.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.074 kcal (2) G-P(sol) polarization free energy of solvation -34.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds