Wall clock time and date at job start Sun Mar 29 2020 21:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47380 * 249.86997 * 3 2 1 5 5 H 1.09005 * 109.46778 * 305.00128 * 4 3 2 6 6 O 1.42896 * 109.47111 * 64.99987 * 4 3 2 7 7 C 1.52995 * 109.47263 * 185.00604 * 4 3 2 8 8 N 1.46903 * 109.46899 * 180.66555 * 7 4 3 9 9 C 1.46846 * 111.00051 * 169.66469 * 8 7 4 10 10 C 1.53035 * 109.52384 * 185.83571 * 9 8 7 11 11 C 1.53117 * 109.27712 * 300.81871 * 10 9 8 12 12 C 1.53123 * 109.16082 * 57.66048 * 11 10 9 13 13 H 1.08999 * 109.53671 * 62.30071 * 12 11 10 14 14 C 1.50697 * 109.50197 * 182.40304 * 12 11 10 15 15 H 1.07999 * 119.99873 * 119.80102 * 14 12 11 16 16 C 1.37877 * 120.00044 * 299.79505 * 14 12 11 17 17 N 1.31512 * 119.99983 * 180.02562 * 16 14 12 18 18 Si 1.86796 * 119.99992 * 0.02562 * 16 14 12 19 19 H 1.48498 * 109.46991 * 89.99743 * 18 16 14 20 20 H 1.48501 * 109.47173 * 209.99738 * 18 16 14 21 21 H 1.48502 * 109.46978 * 329.99783 * 18 16 14 22 22 C 1.46846 * 110.99802 * 293.87433 * 8 7 4 23 23 H 1.09002 * 109.47468 * 9.86702 * 3 2 1 24 24 H 1.09005 * 109.47245 * 129.87237 * 3 2 1 25 25 H 0.96697 * 114.00424 * 60.00121 * 6 4 3 26 26 H 1.09001 * 109.47128 * 300.65630 * 7 4 3 27 27 H 1.08999 * 109.47660 * 60.65956 * 7 4 3 28 28 H 1.08995 * 109.46536 * 305.85410 * 9 8 7 29 29 H 1.09003 * 109.46156 * 65.81802 * 9 8 7 30 30 H 1.09005 * 109.50477 * 180.87966 * 10 9 8 31 31 H 1.08998 * 109.50622 * 60.76128 * 10 9 8 32 32 H 1.08999 * 109.52884 * 297.74659 * 11 10 9 33 33 H 1.09008 * 109.57163 * 177.59170 * 11 10 9 34 34 H 0.97003 * 120.00184 * 180.02562 * 17 16 14 35 35 H 1.09002 * 109.46330 * 294.17892 * 22 8 7 36 36 H 1.09001 * 109.46673 * 54.15589 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1179 0.4973 1.3544 5 1 2.6828 1.4731 1.5708 6 8 2.7403 -0.4294 2.3745 7 6 4.6426 0.6168 1.3128 8 7 5.1333 1.0784 2.6182 9 6 6.5958 0.9723 2.6981 10 6 7.0573 1.3220 4.1147 11 6 6.6109 2.7467 4.4545 12 6 5.0889 2.8429 4.3169 13 1 4.6151 2.1682 5.0299 14 6 4.6472 4.2571 4.5923 15 1 4.1296 4.8194 3.8292 16 6 4.9039 4.8331 5.8184 17 7 4.5179 6.0671 6.0589 18 14 5.7996 3.8607 7.1380 19 1 7.2625 4.0798 7.0071 20 1 5.3492 4.3139 8.4785 21 1 5.4993 2.4152 6.9773 22 6 4.6845 2.4491 2.8944 23 1 2.9719 -1.0116 -0.1761 24 1 2.9711 0.6597 -0.7887 25 1 3.0928 -1.3206 2.2463 26 1 5.0772 -0.3564 1.0848 27 1 4.9301 1.3325 0.5426 28 1 6.8997 -0.0466 2.4583 29 1 7.0494 1.6632 1.9874 30 1 8.1441 1.2583 4.1696 31 1 6.6149 0.6230 4.8245 32 1 7.0839 3.4499 3.7691 33 1 6.8999 2.9855 5.4781 34 1 4.6988 6.4725 6.9214 35 1 5.1471 3.1331 2.1828 36 1 3.6002 2.5028 2.7973 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930923747.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:35 Heat of formation + Delta-G solvation = -52.898671 kcal Electronic energy + Delta-G solvation = -17263.159855 eV Core-core repulsion = 14552.956217 eV Total energy + Delta-G solvation = -2710.203638 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.23119 -38.60606 -37.09738 -35.37328 -33.84950 -32.26723 -31.84791 -27.91513 -26.88917 -24.59838 -22.82679 -22.13659 -20.43096 -19.10833 -18.62088 -17.14018 -17.03355 -16.51027 -16.10300 -15.79308 -15.44921 -15.12143 -14.79771 -14.58115 -14.31754 -14.01232 -13.78453 -13.57714 -13.28827 -12.88996 -12.78103 -12.64291 -12.28617 -12.18173 -11.90936 -11.75000 -11.61825 -11.32018 -11.04888 -10.80558 -10.74557 -10.53820 -9.00146 -8.29890 -6.32750 1.29196 1.36754 1.47789 1.79947 1.88716 2.33563 2.95643 3.06614 3.25714 3.77483 3.94333 4.09215 4.15863 4.25987 4.33131 4.38745 4.53416 4.66998 4.73746 4.80473 4.85101 4.89375 4.92437 5.03067 5.11775 5.20870 5.24851 5.34199 5.52798 5.67291 5.79375 6.22186 6.37194 6.45105 6.68392 6.75723 7.14038 7.33219 8.87165 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.028247 B = 0.006516 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.015844 B = 4296.080505 C = 4880.153322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C 0.236 3.764 3 C -0.047 4.047 4 C 0.114 3.886 5 H 0.070 0.930 6 O -0.570 6.570 7 C 0.027 3.973 8 N -0.543 5.543 9 C 0.065 3.935 10 C -0.116 4.116 11 C -0.122 4.122 12 C 0.018 3.982 13 H 0.017 0.983 14 C -0.518 4.518 15 H 0.031 0.969 16 C 0.011 3.989 17 N -0.953 5.953 18 Si 0.953 3.047 19 H -0.264 1.264 20 H -0.302 1.302 21 H -0.250 1.250 22 C 0.089 3.911 23 H 0.158 0.842 24 H 0.151 0.849 25 H 0.389 0.611 26 H 0.120 0.880 27 H 0.057 0.943 28 H 0.104 0.896 29 H 0.032 0.968 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.029 0.971 34 H 0.264 0.736 35 H 0.019 0.981 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.089 -16.896 -12.660 22.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 C -0.080 4.080 3 C -0.087 4.087 4 C 0.052 3.948 5 H 0.088 0.912 6 O -0.377 6.377 7 C -0.101 4.101 8 N -0.268 5.268 9 C -0.062 4.062 10 C -0.154 4.154 11 C -0.160 4.160 12 C -0.001 4.001 13 H 0.035 0.965 14 C -0.557 4.557 15 H 0.049 0.951 16 C -0.186 4.186 17 N -0.593 5.593 18 Si 0.780 3.220 19 H -0.190 1.190 20 H -0.230 1.230 21 H -0.174 1.174 22 C -0.039 4.039 23 H 0.175 0.825 24 H 0.168 0.832 25 H 0.239 0.761 26 H 0.138 0.862 27 H 0.075 0.925 28 H 0.122 0.878 29 H 0.051 0.949 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.037 0.963 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.881 -16.562 -11.972 21.010 hybrid contribution 0.860 0.813 0.256 1.211 sum 5.741 -15.748 -11.716 20.451 Atomic orbital electron populations 1.81236 1.15599 1.11232 1.10893 1.29803 0.95999 0.91184 0.91016 1.20337 0.79268 1.08826 1.00270 1.21833 0.94023 0.93083 0.85813 0.91161 1.86702 1.76589 1.24399 1.50007 1.22861 0.94397 1.03119 0.89696 1.61803 1.11409 1.22399 1.31173 1.22064 0.86547 1.01934 0.95651 1.21642 1.00666 0.95307 0.97799 1.21914 0.97732 0.97364 0.98997 1.19064 0.92833 0.93460 0.94742 0.96470 1.21399 1.36418 0.98699 0.99180 0.95054 1.25860 0.96426 0.95545 1.00741 1.70056 1.49462 1.15376 1.24437 0.85775 0.78919 0.80208 0.77092 1.19028 1.22991 1.17443 1.21754 0.98660 0.87602 0.95891 0.82463 0.83161 0.76125 0.86213 0.92450 0.87753 0.94929 0.90012 0.92225 0.93238 0.95248 0.92666 0.96313 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -15.17 18.54 20.00 0.37 -14.79 16 2 C 0.24 4.92 15.19 89.44 1.36 6.28 16 3 C -0.05 -0.42 5.39 28.79 0.16 -0.27 16 4 C 0.11 2.04 2.81 30.59 0.09 2.13 16 5 H 0.07 1.81 6.47 -2.38 -0.02 1.80 16 6 O -0.57 -12.70 12.93 -148.98 -1.93 -14.63 16 7 C 0.03 0.43 4.63 86.30 0.40 0.83 16 8 N -0.54 -14.84 4.51 -896.37 -4.04 -18.88 16 9 C 0.07 1.55 5.46 86.33 0.47 2.02 16 10 C -0.12 -3.46 6.09 30.65 0.19 -3.27 16 11 C -0.12 -4.99 4.74 30.67 0.15 -4.85 16 12 C 0.02 0.85 1.85 -11.49 -0.02 0.83 16 13 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 14 C -0.52 -30.15 9.14 25.60 0.23 -29.92 16 15 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 16 C 0.01 0.65 5.45 84.65 0.46 1.11 16 17 N -0.95 -61.02 13.96 21.45 0.30 -60.72 16 18 Si 0.95 46.58 24.36 68.60 1.67 48.25 16 19 H -0.26 -12.13 6.89 99.48 0.69 -11.44 16 20 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 21 H -0.25 -11.60 6.53 99.48 0.65 -10.95 16 22 C 0.09 3.37 4.52 86.33 0.39 3.76 16 23 H 0.16 0.09 8.14 -2.39 -0.02 0.07 16 24 H 0.15 0.50 8.14 -2.38 -0.02 0.48 16 25 H 0.39 4.67 9.05 -74.06 -0.67 4.00 16 26 H 0.12 0.96 7.98 -2.39 -0.02 0.94 16 27 H 0.06 0.81 8.12 -2.39 -0.02 0.79 16 28 H 0.10 1.71 8.01 -2.39 -0.02 1.69 16 29 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.03 1.28 3.37 -2.38 -0.01 1.27 16 34 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 35 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.05 2.15 6.24 -2.39 -0.01 2.13 16 Total: -1.00 -80.77 289.80 0.57 -80.20 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: 0.33 Total: 1.91 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: 3.87 Total: -21.35 kcal Atomic # 7 Polarization: -91.02 SS G_CDS: -3.37 Total: -94.39 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -1.93 Total: -14.63 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.67 Total: 48.25 kcal Total: -80.77 0.57 -80.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930923747.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.304 kcal (2) G-P(sol) polarization free energy of solvation -80.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds