Wall clock time and date at job start Sun Mar 29 2020 22:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.47201 * 109.50418 * 2 1 4 4 N 2.60803 * 109.50643 * 0.02562 * 2 1 3 5 5 C 1.53094 * 109.54452 * 120.11587 * 2 1 3 6 6 N 1.47015 * 109.25487 * 176.80655 * 5 2 1 7 7 C 1.46905 * 110.99622 * 177.60638 * 6 5 2 8 8 C 1.53002 * 109.46879 * 169.99575 * 7 6 5 9 9 C 1.53002 * 109.47203 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47434 * 180.02562 * 9 8 7 11 11 H 1.08007 * 119.99565 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00269 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00230 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99842 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47240 * 89.99869 * 14 12 10 16 16 H 1.48498 * 109.47191 * 209.99738 * 14 12 10 17 17 H 1.48500 * 109.47166 * 330.00267 * 14 12 10 18 18 C 1.47018 * 110.75219 * 301.37500 * 6 5 2 19 19 C 1.53099 * 109.25222 * 58.61953 * 18 6 5 20 20 O 1.43010 * 109.26246 * 303.15319 * 19 18 6 21 21 H 1.09005 * 109.47064 * 180.08609 * 1 2 3 22 22 H 1.09003 * 109.46579 * 300.08105 * 1 2 3 23 23 H 1.08997 * 109.47838 * 60.07949 * 1 2 3 24 24 H 1.09003 * 109.50600 * 296.73562 * 5 2 1 25 25 H 1.08996 * 109.51043 * 56.86472 * 5 2 1 26 26 H 1.09001 * 109.46983 * 289.99010 * 7 6 5 27 27 H 1.08994 * 109.47366 * 49.99937 * 7 6 5 28 28 H 1.08998 * 109.47345 * 300.00073 * 8 7 6 29 29 H 1.09008 * 109.47000 * 60.00061 * 8 7 6 30 30 H 1.08999 * 109.46831 * 300.00169 * 9 8 7 31 31 H 1.08999 * 109.46755 * 59.99698 * 9 8 7 32 32 H 0.96991 * 119.99933 * 179.97438 * 13 12 10 33 33 H 1.08998 * 109.50436 * 178.55404 * 18 6 5 34 34 H 1.08995 * 109.50686 * 298.64309 * 18 6 5 35 35 H 1.09002 * 109.50591 * 183.20928 * 19 18 6 36 36 H 1.09006 * 109.50796 * 63.08682 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0215 1.3875 0.0000 4 7 2.4008 2.4583 0.0011 5 6 2.0422 -0.7239 1.2480 6 7 3.5103 -0.7874 1.2034 7 6 4.0465 -1.4258 2.4129 8 6 5.5400 -1.6999 2.2255 9 6 6.0987 -2.3642 3.4855 10 6 7.5700 -2.6336 3.3011 11 1 8.0576 -2.3589 2.3774 12 6 8.2932 -3.2317 4.3111 13 7 9.5770 -3.4673 4.1501 14 14 7.4495 -3.7075 5.9084 15 1 6.9278 -5.0935 5.7990 16 1 8.4255 -3.6327 7.0251 17 1 6.3243 -2.7745 6.1709 18 6 3.9649 -1.4869 -0.0072 19 6 3.4333 -0.7554 -1.2426 20 8 2.0075 -0.6757 -1.1665 21 1 -0.3633 -1.0277 0.0015 22 1 -0.3632 0.5151 0.8893 23 1 -0.3635 0.5126 -0.8906 24 1 1.7283 -0.1798 2.1389 25 1 1.6347 -1.7345 1.2756 26 1 3.9030 -0.7640 3.2671 27 1 3.5240 -2.3659 2.5897 28 1 5.6836 -2.3615 1.3713 29 1 6.0626 -0.7597 2.0487 30 1 5.9552 -1.7021 4.3393 31 1 5.5762 -3.3042 3.6627 32 1 10.0858 -3.8877 4.8608 33 1 5.0545 -1.4998 -0.0325 34 1 3.5888 -2.5099 0.0008 35 1 3.7200 -1.3024 -2.1408 36 1 3.8526 0.2501 -1.2787 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933600087.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:10 Heat of formation + Delta-G solvation = -16.467578 kcal Electronic energy + Delta-G solvation = -16972.556870 eV Core-core repulsion = 14263.933003 eV Total energy + Delta-G solvation = -2708.623867 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.40124 -36.84656 -36.04925 -33.68902 -33.22891 -31.57101 -29.02848 -27.57315 -25.07043 -24.01942 -22.80289 -21.24642 -19.86495 -18.04215 -16.88250 -16.37211 -16.06074 -15.38475 -15.09203 -14.40429 -14.14053 -14.07407 -13.84123 -13.31226 -12.82254 -12.76501 -12.69156 -12.54053 -12.15722 -12.00960 -11.86160 -11.78345 -11.56760 -10.95167 -10.85841 -10.69358 -10.11554 -9.99875 -9.74201 -9.60643 -9.19157 -8.55774 -8.36109 -6.06051 -4.04315 2.46234 2.67051 3.28572 3.36448 3.39619 3.49658 3.60243 3.76221 4.39381 4.43294 4.67260 4.85899 5.05302 5.15500 5.21472 5.27348 5.28681 5.33683 5.43544 5.55526 5.63807 5.72305 5.79919 5.82974 6.04167 6.40942 6.48527 6.70340 6.78473 7.01470 7.04397 7.26206 7.39267 7.41558 7.77313 8.51951 8.98714 9.56332 11.07498 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.042698 B = 0.004782 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.612381 B = 5854.206883 C = 6014.623816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.220 3.780 3 C 0.197 3.803 4 N -0.413 5.413 5 C 0.032 3.968 6 N -0.541 5.541 7 C 0.055 3.945 8 C -0.105 4.105 9 C -0.012 4.012 10 C -0.520 4.520 11 H 0.071 0.929 12 C 0.066 3.934 13 N -0.904 5.904 14 Si 0.880 3.120 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.266 1.266 18 C 0.011 3.989 19 C 0.056 3.944 20 O -0.360 6.360 21 H 0.085 0.915 22 H 0.082 0.918 23 H 0.075 0.925 24 H 0.092 0.908 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.035 0.965 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.016 0.984 31 H 0.010 0.990 32 H 0.263 0.737 33 H 0.104 0.896 34 H 0.049 0.951 35 H 0.108 0.892 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.175 3.356 -8.096 21.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.176 3.824 3 C -0.123 4.123 4 N -0.090 5.090 5 C -0.098 4.098 6 N -0.266 5.266 7 C -0.072 4.072 8 C -0.143 4.143 9 C -0.050 4.050 10 C -0.558 4.558 11 H 0.089 0.911 12 C -0.135 4.135 13 N -0.543 5.543 14 Si 0.708 3.292 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.190 1.190 18 C -0.117 4.117 19 C -0.021 4.021 20 O -0.277 6.277 21 H 0.104 0.896 22 H 0.101 0.899 23 H 0.094 0.906 24 H 0.111 0.889 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.034 0.966 31 H 0.028 0.972 32 H 0.073 0.927 33 H 0.122 0.878 34 H 0.067 0.933 35 H 0.126 0.874 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.379 5.274 -8.178 20.796 hybrid contribution -0.377 -1.456 1.136 1.885 sum -18.756 3.818 -7.041 20.395 Atomic orbital electron populations 1.21788 0.89142 1.04645 1.03908 1.19021 0.95341 0.80235 0.87776 1.29611 0.93600 0.95208 0.93867 1.81133 1.07820 1.13074 1.06999 1.22774 0.89743 1.00339 0.96916 1.62338 1.06998 1.53810 1.03417 1.22357 0.97359 0.96686 0.90806 1.21629 0.91448 1.00939 1.00303 1.19540 0.96938 0.95126 0.93413 1.21122 0.92078 1.39598 1.03024 0.91070 1.25036 0.94708 0.95261 0.98506 1.69913 1.07066 1.43564 1.33735 0.86768 0.79661 0.79226 0.83557 1.20335 1.21378 1.19037 1.22927 1.02947 0.96165 0.89701 1.22899 0.79611 1.00976 0.98573 1.88129 1.22510 1.75724 1.41291 0.89607 0.89943 0.90625 0.88927 0.91781 0.90728 0.94719 0.92449 0.91886 0.96562 0.97195 0.92729 0.87827 0.93280 0.87393 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.81 37.16 0.33 -0.56 16 2 C 0.22 2.21 1.05 -93.36 -0.10 2.11 16 3 C 0.20 2.52 12.49 -20.76 -0.26 2.26 16 4 N -0.41 -6.32 18.54 42.15 0.78 -5.54 16 5 C 0.03 0.33 4.30 -3.71 -0.02 0.32 16 6 N -0.54 -7.30 4.53 -234.31 -1.06 -8.36 16 7 C 0.05 0.84 5.28 -3.82 -0.02 0.82 16 8 C -0.11 -2.01 4.42 -26.73 -0.12 -2.12 16 9 C -0.01 -0.29 4.04 -27.88 -0.11 -0.40 16 10 C -0.52 -14.75 9.66 -34.44 -0.33 -15.08 16 11 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 12 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 13 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 14 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 17 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 18 C 0.01 0.13 4.94 -3.71 -0.02 0.11 16 19 C 0.06 0.61 6.69 37.21 0.25 0.86 16 20 O -0.36 -3.94 10.26 -35.23 -0.36 -4.30 16 21 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 22 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.03 0.51 8.08 -51.93 -0.42 0.09 16 28 H 0.06 1.06 6.28 -51.93 -0.33 0.74 16 29 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 30 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 31 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 32 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.10 1.40 6.05 -51.93 -0.31 1.08 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.73 7.23 -51.93 -0.38 0.36 16 LS Contribution 294.65 15.07 4.44 4.44 Total: -1.00 -32.32 294.65 -6.19 -38.51 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: -5.59 Total: -4.69 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -0.50 Total: -9.86 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.49 Total: -41.02 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -0.36 Total: -4.30 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.32 -6.19 -38.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933600087.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.038 kcal (2) G-P(sol) polarization free energy of solvation -32.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds