Wall clock time and date at job start Sun Mar 29 2020 22:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.47201 * 109.50418 * 2 1 4 4 N 2.60803 * 109.50643 * 0.02562 * 2 1 3 5 5 C 1.53094 * 109.54452 * 120.11587 * 2 1 3 6 6 N 1.47015 * 109.25487 * 176.80655 * 5 2 1 7 7 C 1.46905 * 110.99622 * 177.60638 * 6 5 2 8 8 C 1.53002 * 109.46879 * 169.99575 * 7 6 5 9 9 C 1.53002 * 109.47203 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47434 * 180.02562 * 9 8 7 11 11 H 1.08007 * 119.99565 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00269 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00230 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99842 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47240 * 89.99869 * 14 12 10 16 16 H 1.48498 * 109.47191 * 209.99738 * 14 12 10 17 17 H 1.48500 * 109.47166 * 330.00267 * 14 12 10 18 18 C 1.47018 * 110.75219 * 301.37500 * 6 5 2 19 19 C 1.53099 * 109.25222 * 58.61953 * 18 6 5 20 20 O 1.43010 * 109.26246 * 303.15319 * 19 18 6 21 21 H 1.09005 * 109.47064 * 180.08609 * 1 2 3 22 22 H 1.09003 * 109.46579 * 300.08105 * 1 2 3 23 23 H 1.08997 * 109.47838 * 60.07949 * 1 2 3 24 24 H 1.09003 * 109.50600 * 296.73562 * 5 2 1 25 25 H 1.08996 * 109.51043 * 56.86472 * 5 2 1 26 26 H 1.09001 * 109.46983 * 289.99010 * 7 6 5 27 27 H 1.08994 * 109.47366 * 49.99937 * 7 6 5 28 28 H 1.08998 * 109.47345 * 300.00073 * 8 7 6 29 29 H 1.09008 * 109.47000 * 60.00061 * 8 7 6 30 30 H 1.08999 * 109.46831 * 300.00169 * 9 8 7 31 31 H 1.08999 * 109.46755 * 59.99698 * 9 8 7 32 32 H 0.96991 * 119.99933 * 179.97438 * 13 12 10 33 33 H 1.08998 * 109.50436 * 178.55404 * 18 6 5 34 34 H 1.08995 * 109.50686 * 298.64309 * 18 6 5 35 35 H 1.09002 * 109.50591 * 183.20928 * 19 18 6 36 36 H 1.09006 * 109.50796 * 63.08682 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0215 1.3875 0.0000 4 7 2.4008 2.4583 0.0011 5 6 2.0422 -0.7239 1.2480 6 7 3.5103 -0.7874 1.2034 7 6 4.0465 -1.4258 2.4129 8 6 5.5400 -1.6999 2.2255 9 6 6.0987 -2.3642 3.4855 10 6 7.5700 -2.6336 3.3011 11 1 8.0576 -2.3589 2.3774 12 6 8.2932 -3.2317 4.3111 13 7 9.5770 -3.4673 4.1501 14 14 7.4495 -3.7075 5.9084 15 1 6.9278 -5.0935 5.7990 16 1 8.4255 -3.6327 7.0251 17 1 6.3243 -2.7745 6.1709 18 6 3.9649 -1.4869 -0.0072 19 6 3.4333 -0.7554 -1.2426 20 8 2.0075 -0.6757 -1.1665 21 1 -0.3633 -1.0277 0.0015 22 1 -0.3632 0.5151 0.8893 23 1 -0.3635 0.5126 -0.8906 24 1 1.7283 -0.1798 2.1389 25 1 1.6347 -1.7345 1.2756 26 1 3.9030 -0.7640 3.2671 27 1 3.5240 -2.3659 2.5897 28 1 5.6836 -2.3615 1.3713 29 1 6.0626 -0.7597 2.0487 30 1 5.9552 -1.7021 4.3393 31 1 5.5762 -3.3042 3.6627 32 1 10.0858 -3.8877 4.8608 33 1 5.0545 -1.4998 -0.0325 34 1 3.5888 -2.5099 0.0008 35 1 3.7200 -1.3024 -2.1408 36 1 3.8526 0.2501 -1.2787 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933600087.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:10 Heat of formation + Delta-G solvation = -39.558453 kcal Electronic energy + Delta-G solvation = -16973.558166 eV Core-core repulsion = 14263.933003 eV Total energy + Delta-G solvation = -2709.625163 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.29155 -37.98685 -37.09853 -35.45380 -34.13356 -33.37633 -30.09519 -28.88817 -26.30526 -24.89250 -24.06570 -22.64736 -21.30331 -18.95281 -18.88386 -17.44387 -16.98895 -16.50557 -16.27026 -15.99321 -15.34402 -15.10047 -15.03636 -14.70678 -14.36968 -13.90582 -13.76358 -13.38711 -13.31655 -13.14925 -12.95710 -12.85740 -12.64845 -12.53461 -12.14491 -11.86941 -11.75657 -11.56168 -11.44889 -11.25776 -10.83637 -10.75368 -9.35939 -8.29164 -6.33778 1.36469 1.39246 1.49580 1.51048 1.69926 2.36978 2.65305 2.70862 2.84921 3.06502 3.57484 3.90248 3.93270 4.10989 4.21922 4.26696 4.44950 4.53321 4.62030 4.66683 4.70961 4.78341 4.88521 4.90990 4.94550 5.00386 5.11902 5.27585 5.49015 5.58561 5.66099 5.85088 5.94672 6.03368 6.29255 6.44242 6.74783 7.31128 8.87955 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.042698 B = 0.004782 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.612381 B = 5854.206883 C = 6014.623816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.218 3.782 3 C 0.215 3.785 4 N -0.465 5.465 5 C 0.031 3.969 6 N -0.559 5.559 7 C 0.067 3.933 8 C -0.097 4.097 9 C -0.009 4.009 10 C -0.534 4.534 11 H 0.028 0.972 12 C 0.001 3.999 13 N -0.954 5.954 14 Si 0.954 3.046 15 H -0.263 1.263 16 H -0.287 1.287 17 H -0.244 1.244 18 C 0.011 3.989 19 C 0.060 3.940 20 O -0.359 6.359 21 H 0.106 0.894 22 H 0.098 0.902 23 H 0.077 0.923 24 H 0.105 0.895 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.041 0.959 30 H 0.019 0.981 31 H 0.023 0.977 32 H 0.266 0.734 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.131 0.869 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.328 2.491 -7.251 23.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.174 3.826 3 C -0.104 4.104 4 N -0.143 5.143 5 C -0.098 4.098 6 N -0.284 5.284 7 C -0.060 4.060 8 C -0.134 4.134 9 C -0.047 4.047 10 C -0.572 4.572 11 H 0.046 0.954 12 C -0.195 4.195 13 N -0.595 5.595 14 Si 0.777 3.223 15 H -0.188 1.188 16 H -0.212 1.212 17 H -0.168 1.168 18 C -0.117 4.117 19 C -0.016 4.016 20 O -0.276 6.276 21 H 0.124 0.876 22 H 0.117 0.883 23 H 0.096 0.904 24 H 0.123 0.877 25 H 0.104 0.896 26 H 0.095 0.905 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.037 0.963 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.149 0.851 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -21.560 4.420 -7.354 23.204 hybrid contribution 0.671 -1.169 0.768 1.551 sum -20.889 3.251 -6.586 22.143 Atomic orbital electron populations 1.21882 0.86013 1.06305 1.04892 1.19457 0.97415 0.78305 0.87390 1.30282 0.92191 0.95615 0.92304 1.81145 1.09577 1.14909 1.08685 1.22921 0.87544 1.01787 0.97581 1.62273 1.09297 1.53947 1.02895 1.22093 0.94404 0.97671 0.91793 1.21441 0.94257 0.99439 0.98301 1.19486 0.93722 0.96074 0.95455 1.21516 0.94941 1.39224 1.01507 0.95410 1.26082 0.95322 0.95206 1.02924 1.70081 1.09100 1.45002 1.35339 0.85596 0.78944 0.79781 0.77942 1.18833 1.21249 1.16761 1.22897 1.01935 0.96827 0.90025 1.22885 0.79778 1.00095 0.98881 1.88148 1.22094 1.75542 1.41809 0.87579 0.88283 0.90421 0.87656 0.89576 0.90502 0.93168 0.92528 0.93969 0.96264 0.95846 0.92534 0.89748 0.92355 0.85138 0.94007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 8.81 71.98 0.63 -0.61 16 2 C 0.22 3.78 1.05 -12.57 -0.01 3.77 16 3 C 0.21 5.23 12.49 89.44 1.12 6.35 16 4 N -0.47 -14.12 18.54 20.01 0.37 -13.75 16 5 C 0.03 0.54 4.30 86.31 0.37 0.91 16 6 N -0.56 -14.00 4.53 -895.21 -4.05 -18.06 16 7 C 0.07 1.91 5.28 86.30 0.46 2.37 16 8 C -0.10 -3.64 4.42 30.60 0.14 -3.50 16 9 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16 10 C -0.53 -30.94 9.66 25.60 0.25 -30.69 16 11 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 12 C 0.00 0.06 5.47 84.65 0.46 0.52 16 13 N -0.95 -60.43 13.96 21.45 0.30 -60.14 16 14 Si 0.95 43.86 27.47 68.60 1.88 45.74 16 15 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 16 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 17 H -0.24 -10.30 6.54 99.48 0.65 -9.65 16 18 C 0.01 0.26 4.94 86.31 0.43 0.69 16 19 C 0.06 1.24 6.69 72.02 0.48 1.72 16 20 O -0.36 -6.96 10.26 -148.98 -1.53 -8.49 16 21 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 22 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 23 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.05 1.28 8.08 -2.39 -0.02 1.26 16 28 H 0.06 2.11 6.28 -2.39 -0.01 2.10 16 29 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 31 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 32 H 0.27 15.66 8.31 -92.72 -0.77 14.89 16 33 H 0.08 2.29 6.05 -2.39 -0.01 2.27 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.04 1.01 7.23 -2.38 -0.02 0.99 16 Total: -1.00 -71.71 294.65 2.41 -69.30 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: 0.99 Total: 4.19 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 4.44 Total: -18.80 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -3.38 Total: -91.94 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -1.53 Total: -8.49 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.88 Total: 45.74 kcal Total: -71.71 2.41 -69.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933600087.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.745 kcal (2) G-P(sol) polarization free energy of solvation -71.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds