Wall clock time and date at job start Sun Mar 29 2020 22:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.47201 * 109.50949 * 2 1 4 4 N 2.60799 * 109.50770 * 0.02562 * 2 1 3 5 5 C 1.53105 * 109.50576 * 239.91241 * 2 1 3 6 6 N 1.47010 * 109.25567 * 183.21721 * 5 2 1 7 7 C 1.46901 * 111.00082 * 182.39494 * 6 5 2 8 8 C 1.52995 * 109.47364 * 190.00277 * 7 6 5 9 9 C 1.53007 * 109.47241 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47283 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99795 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99997 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99936 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00005 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47379 * 359.97438 * 14 12 10 16 16 H 1.48509 * 109.47349 * 119.99821 * 14 12 10 17 17 H 1.48498 * 109.47550 * 239.99735 * 14 12 10 18 18 C 1.47012 * 110.75598 * 58.61912 * 6 5 2 19 19 C 1.53097 * 109.25835 * 301.38154 * 18 6 5 20 20 O 1.43018 * 109.50498 * 120.08830 * 2 1 3 21 21 H 1.09002 * 109.47153 * 59.99812 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00003 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.50510 * 303.15079 * 5 2 1 25 25 H 1.08999 * 109.50601 * 63.24030 * 5 2 1 26 26 H 1.09002 * 109.46982 * 309.99881 * 7 6 5 27 27 H 1.08996 * 109.47483 * 69.99406 * 7 6 5 28 28 H 1.08998 * 109.47116 * 299.99439 * 8 7 6 29 29 H 1.08999 * 109.47375 * 59.99914 * 8 7 6 30 30 H 1.08997 * 109.47129 * 300.00436 * 9 8 7 31 31 H 1.09008 * 109.46726 * 59.99740 * 9 8 7 32 32 H 0.97005 * 120.00273 * 180.02562 * 13 12 10 33 33 H 1.09000 * 109.50834 * 61.31180 * 18 6 5 34 34 H 1.08996 * 109.51180 * 181.40450 * 18 6 5 35 35 H 1.08998 * 109.51178 * 176.78027 * 19 18 6 36 36 H 1.08997 * 109.50628 * 296.91448 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0216 1.3875 0.0000 4 7 2.4009 2.4583 0.0011 5 6 2.0412 -0.7235 -1.2487 6 7 3.5092 -0.7880 -1.2048 7 6 4.0446 -1.4260 -2.4149 8 6 5.5380 -1.7012 -2.2282 9 6 6.0955 -2.3662 -3.4884 10 6 7.5666 -2.6367 -3.3048 11 1 8.0551 -2.3621 -2.3815 12 6 8.2890 -3.2346 -4.3156 13 7 7.6944 -3.5684 -5.4401 14 14 10.1123 -3.5705 -4.0877 15 1 10.5377 -3.1032 -2.7439 16 1 10.3659 -5.0288 -4.2084 17 1 10.8832 -2.8462 -5.1300 18 6 3.9639 -1.4885 0.0051 19 6 3.4335 -0.7574 1.2413 20 8 2.0075 -0.6759 1.1665 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6331 -1.7338 -1.2766 25 1 1.7267 -0.1791 -2.1391 26 1 3.5214 -2.3657 -2.5920 27 1 3.9011 -0.7638 -3.2686 28 1 6.0612 -0.7615 -2.0512 29 1 5.6815 -2.3635 -1.3746 30 1 5.5722 -3.3058 -3.6652 31 1 5.9519 -1.7041 -4.3424 32 1 8.2025 -3.9894 -6.1511 33 1 3.5865 -2.5110 -0.0027 34 1 5.0535 -1.5028 0.0297 35 1 3.7200 -1.3051 2.1390 36 1 3.8534 0.2477 1.2778 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933600091.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:12 Heat of formation + Delta-G solvation = -20.268412 kcal Electronic energy + Delta-G solvation = -16928.062551 eV Core-core repulsion = 14219.273867 eV Total energy + Delta-G solvation = -2708.788684 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.34915 -36.76263 -36.00347 -33.64525 -33.20325 -31.35689 -28.92022 -27.21710 -24.96451 -23.96773 -22.87574 -21.41602 -19.79593 -18.00358 -16.69460 -16.11493 -15.96380 -15.30305 -15.05062 -14.46605 -14.09848 -13.99226 -13.92905 -13.23494 -12.73783 -12.73383 -12.56403 -12.31837 -12.11709 -11.87687 -11.77516 -11.52899 -11.40449 -10.91344 -10.82190 -10.54773 -10.48026 -9.99431 -9.71055 -9.39567 -9.07097 -8.37207 -8.28001 -6.02250 -4.04533 2.49666 2.70526 3.29770 3.37431 3.41474 3.53351 3.64375 3.83451 4.44370 4.45159 4.71634 4.90510 5.10663 5.20604 5.25374 5.33263 5.34096 5.37721 5.50006 5.64877 5.74634 5.77868 5.86206 5.88468 6.19161 6.57260 6.65574 6.74310 6.95417 7.13263 7.19009 7.44944 7.64276 7.78023 7.97358 8.40174 9.02579 9.59857 11.09207 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.045612 B = 0.004484 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.721630 B = 6242.522593 C = 6358.610067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.220 3.780 3 C 0.198 3.802 4 N -0.414 5.414 5 C 0.032 3.968 6 N -0.541 5.541 7 C 0.057 3.943 8 C -0.113 4.113 9 C 0.022 3.978 10 C -0.519 4.519 11 H 0.055 0.945 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.891 3.109 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.011 3.989 19 C 0.056 3.944 20 O -0.360 6.360 21 H 0.082 0.918 22 H 0.074 0.926 23 H 0.085 0.915 24 H 0.064 0.936 25 H 0.093 0.907 26 H 0.035 0.965 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.015 0.985 31 H 0.016 0.984 32 H 0.260 0.740 33 H 0.048 0.952 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.492 3.480 11.046 18.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.176 3.824 3 C -0.122 4.122 4 N -0.092 5.092 5 C -0.098 4.098 6 N -0.266 5.266 7 C -0.069 4.069 8 C -0.150 4.150 9 C -0.015 4.015 10 C -0.558 4.558 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.535 5.535 14 Si 0.719 3.281 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.117 4.117 19 C -0.021 4.021 20 O -0.277 6.277 21 H 0.101 0.899 22 H 0.093 0.907 23 H 0.104 0.896 24 H 0.082 0.918 25 H 0.111 0.889 26 H 0.053 0.947 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.033 0.967 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.823 5.392 11.053 18.501 hybrid contribution 0.907 -1.370 -0.272 1.665 sum -12.916 4.022 10.781 17.298 Atomic orbital electron populations 1.21788 0.89155 1.04652 1.03880 1.19032 0.95332 0.80227 0.87813 1.29615 0.93559 0.95204 0.93810 1.81124 1.07877 1.13088 1.07064 1.22772 0.89846 1.00333 0.96826 1.62356 1.06954 1.53821 1.03511 1.22334 0.97423 0.96679 0.90506 1.21799 0.91579 1.00522 1.01139 1.19072 0.95519 0.95387 0.91565 1.21267 0.94362 1.39185 1.00942 0.92660 1.25019 0.98435 0.95739 0.95258 1.69971 1.36046 1.42112 1.05387 0.86546 0.85461 0.77881 0.78179 1.19736 1.21013 1.20999 1.22906 1.02833 0.96158 0.89765 1.22895 0.79669 1.00912 0.98576 1.88128 1.22485 1.75761 1.41308 0.89922 0.90674 0.89599 0.91793 0.88903 0.94699 0.90722 0.92526 0.93055 0.96702 0.96518 0.93054 0.93344 0.87960 0.87494 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 8.81 37.16 0.33 -0.62 16 2 C 0.22 2.30 1.05 -93.35 -0.10 2.20 16 3 C 0.20 2.61 12.50 -20.76 -0.26 2.35 16 4 N -0.41 -6.46 18.54 42.15 0.78 -5.68 16 5 C 0.03 0.36 4.30 -3.71 -0.02 0.34 16 6 N -0.54 -7.68 4.53 -234.31 -1.06 -8.74 16 7 C 0.06 0.94 5.28 -3.83 -0.02 0.92 16 8 C -0.11 -2.25 4.42 -26.73 -0.12 -2.36 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 11 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 14 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 15 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 18 C 0.01 0.15 4.94 -3.71 -0.02 0.13 16 19 C 0.06 0.63 6.69 37.21 0.25 0.88 16 20 O -0.36 -4.07 10.27 -35.23 -0.36 -4.43 16 21 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.03 0.56 8.08 -51.93 -0.42 0.14 16 27 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.05 0.98 6.28 -51.93 -0.33 0.66 16 30 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.02 0.45 8.14 -51.92 -0.42 0.02 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 1.41 6.05 -51.93 -0.31 1.10 16 35 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.74 7.23 -51.93 -0.38 0.36 16 LS Contribution 298.25 15.07 4.49 4.49 Total: -1.00 -31.76 298.25 -6.56 -38.32 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: -5.63 Total: -5.33 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -0.50 Total: -9.14 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.46 Total: -40.49 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.36 Total: -4.43 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.76 -6.56 -38.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933600091.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.056 kcal (2) G-P(sol) polarization free energy of solvation -31.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds