Wall clock time and date at job start Sun Mar 29 2020 22:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.47201 * 109.50949 * 2 1 4 4 N 2.60799 * 109.50770 * 0.02562 * 2 1 3 5 5 C 1.53105 * 109.50576 * 239.91241 * 2 1 3 6 6 N 1.47010 * 109.25567 * 183.21721 * 5 2 1 7 7 C 1.46901 * 111.00082 * 182.39494 * 6 5 2 8 8 C 1.52995 * 109.47364 * 190.00277 * 7 6 5 9 9 C 1.53007 * 109.47241 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47283 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99795 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99997 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99936 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00005 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47379 * 359.97438 * 14 12 10 16 16 H 1.48509 * 109.47349 * 119.99821 * 14 12 10 17 17 H 1.48498 * 109.47550 * 239.99735 * 14 12 10 18 18 C 1.47012 * 110.75598 * 58.61912 * 6 5 2 19 19 C 1.53097 * 109.25835 * 301.38154 * 18 6 5 20 20 O 1.43018 * 109.50498 * 120.08830 * 2 1 3 21 21 H 1.09002 * 109.47153 * 59.99812 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00003 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.50510 * 303.15079 * 5 2 1 25 25 H 1.08999 * 109.50601 * 63.24030 * 5 2 1 26 26 H 1.09002 * 109.46982 * 309.99881 * 7 6 5 27 27 H 1.08996 * 109.47483 * 69.99406 * 7 6 5 28 28 H 1.08998 * 109.47116 * 299.99439 * 8 7 6 29 29 H 1.08999 * 109.47375 * 59.99914 * 8 7 6 30 30 H 1.08997 * 109.47129 * 300.00436 * 9 8 7 31 31 H 1.09008 * 109.46726 * 59.99740 * 9 8 7 32 32 H 0.97005 * 120.00273 * 180.02562 * 13 12 10 33 33 H 1.09000 * 109.50834 * 61.31180 * 18 6 5 34 34 H 1.08996 * 109.51180 * 181.40450 * 18 6 5 35 35 H 1.08998 * 109.51178 * 176.78027 * 19 18 6 36 36 H 1.08997 * 109.50628 * 296.91448 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0216 1.3875 0.0000 4 7 2.4009 2.4583 0.0011 5 6 2.0412 -0.7235 -1.2487 6 7 3.5092 -0.7880 -1.2048 7 6 4.0446 -1.4260 -2.4149 8 6 5.5380 -1.7012 -2.2282 9 6 6.0955 -2.3662 -3.4884 10 6 7.5666 -2.6367 -3.3048 11 1 8.0551 -2.3621 -2.3815 12 6 8.2890 -3.2346 -4.3156 13 7 7.6944 -3.5684 -5.4401 14 14 10.1123 -3.5705 -4.0877 15 1 10.5377 -3.1032 -2.7439 16 1 10.3659 -5.0288 -4.2084 17 1 10.8832 -2.8462 -5.1300 18 6 3.9639 -1.4885 0.0051 19 6 3.4335 -0.7574 1.2413 20 8 2.0075 -0.6759 1.1665 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6331 -1.7338 -1.2766 25 1 1.7267 -0.1791 -2.1391 26 1 3.5214 -2.3657 -2.5920 27 1 3.9011 -0.7638 -3.2686 28 1 6.0612 -0.7615 -2.0512 29 1 5.6815 -2.3635 -1.3746 30 1 5.5722 -3.3058 -3.6652 31 1 5.9519 -1.7041 -4.3424 32 1 8.2025 -3.9894 -6.1511 33 1 3.5865 -2.5110 -0.0027 34 1 5.0535 -1.5028 0.0297 35 1 3.7200 -1.3051 2.1390 36 1 3.8534 0.2477 1.2778 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933600091.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:12 Heat of formation + Delta-G solvation = -41.965516 kcal Electronic energy + Delta-G solvation = -16929.003408 eV Core-core repulsion = 14219.273867 eV Total energy + Delta-G solvation = -2709.729541 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.29031 -37.97070 -37.09206 -35.49466 -34.12879 -33.12683 -29.97857 -28.64314 -26.34775 -24.89750 -24.25682 -22.81487 -21.27394 -18.93916 -18.51850 -17.39243 -16.99545 -16.54514 -16.39078 -15.97551 -15.30086 -15.17585 -15.03808 -14.37972 -14.28015 -13.83481 -13.72710 -13.32285 -13.27624 -13.11339 -12.93437 -12.77506 -12.70011 -12.60006 -12.43037 -11.99888 -11.78289 -11.49206 -11.34653 -11.20464 -10.81657 -10.55497 -9.37447 -8.20836 -6.31420 1.39361 1.40213 1.49247 1.53059 1.69408 2.40200 2.65656 2.70471 2.84608 3.12815 3.57227 3.90462 3.94130 4.11979 4.24774 4.27541 4.46640 4.53277 4.64124 4.68165 4.70914 4.80354 4.88660 4.91825 4.99286 5.11027 5.22241 5.27323 5.50748 5.72669 5.84920 5.85234 5.93158 6.02740 6.25815 6.43753 6.85612 7.37998 8.91200 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.045612 B = 0.004484 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.721630 B = 6242.522593 C = 6358.610067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.220 3.780 3 C 0.215 3.785 4 N -0.463 5.463 5 C 0.029 3.971 6 N -0.556 5.556 7 C 0.070 3.930 8 C -0.097 4.097 9 C 0.026 3.974 10 C -0.542 4.542 11 H 0.058 0.942 12 C 0.001 3.999 13 N -0.933 5.933 14 Si 0.963 3.037 15 H -0.263 1.263 16 H -0.276 1.276 17 H -0.280 1.280 18 C 0.010 3.990 19 C 0.061 3.939 20 O -0.359 6.359 21 H 0.097 0.903 22 H 0.079 0.921 23 H 0.105 0.895 24 H 0.083 0.917 25 H 0.102 0.898 26 H 0.040 0.960 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.060 0.940 30 H -0.005 1.005 31 H -0.010 1.010 32 H 0.263 0.737 33 H 0.056 0.944 34 H 0.089 0.911 35 H 0.133 0.867 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.126 2.907 12.222 19.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.176 3.824 3 C -0.104 4.104 4 N -0.142 5.142 5 C -0.100 4.100 6 N -0.281 5.281 7 C -0.057 4.057 8 C -0.135 4.135 9 C -0.012 4.012 10 C -0.580 4.580 11 H 0.076 0.924 12 C -0.197 4.197 13 N -0.573 5.573 14 Si 0.788 3.212 15 H -0.187 1.187 16 H -0.202 1.202 17 H -0.205 1.205 18 C -0.117 4.117 19 C -0.016 4.016 20 O -0.276 6.276 21 H 0.116 0.884 22 H 0.098 0.902 23 H 0.123 0.877 24 H 0.101 0.899 25 H 0.120 0.880 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.014 0.986 31 H 0.009 0.991 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.151 0.849 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -14.472 4.826 12.247 19.563 hybrid contribution 1.072 -1.197 -0.642 1.731 sum -13.400 3.629 11.605 18.094 Atomic orbital electron populations 1.21883 0.86032 1.06279 1.04920 1.19411 0.97399 0.78346 0.87243 1.30241 0.92219 0.95582 0.92323 1.81136 1.09542 1.14815 1.08660 1.22918 0.87724 1.01672 0.97654 1.62287 1.09196 1.53787 1.02854 1.22025 0.95023 0.97029 0.91619 1.21539 0.93911 0.99476 0.98564 1.18970 0.94742 0.94293 0.93187 1.21713 0.95877 1.39230 1.01175 0.92386 1.25944 1.03473 0.95415 0.94872 1.70093 1.38067 1.42859 1.06287 0.85431 0.79348 0.77973 0.78493 1.18704 1.20184 1.20538 1.22922 1.02175 0.96724 0.89924 1.22907 0.79706 1.00178 0.98803 1.88149 1.22232 1.75545 1.41640 0.88389 0.90221 0.87662 0.89873 0.87985 0.94139 0.91354 0.93561 0.92156 0.98626 0.99145 0.92770 0.92626 0.89304 0.84890 0.93832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 8.81 71.98 0.63 -0.78 16 2 C 0.22 4.07 1.05 -12.56 -0.01 4.06 16 3 C 0.22 5.42 12.50 89.44 1.12 6.54 16 4 N -0.46 -14.32 18.54 20.01 0.37 -13.95 16 5 C 0.03 0.58 4.30 86.32 0.37 0.95 16 6 N -0.56 -15.05 4.53 -895.23 -4.05 -19.10 16 7 C 0.07 2.27 5.28 86.30 0.46 2.72 16 8 C -0.10 -3.90 4.42 30.59 0.14 -3.76 16 9 C 0.03 1.34 4.97 29.85 0.15 1.49 16 10 C -0.54 -30.81 9.11 25.60 0.23 -30.57 16 11 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 12 C 0.00 0.04 5.46 84.65 0.46 0.50 16 13 N -0.93 -56.56 13.29 21.45 0.28 -56.27 16 14 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 15 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 16 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 C 0.01 0.25 4.94 86.31 0.43 0.68 16 19 C 0.06 1.25 6.69 72.01 0.48 1.73 16 20 O -0.36 -7.19 10.27 -148.98 -1.53 -8.72 16 21 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 22 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 24 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.04 1.26 8.08 -2.39 -0.02 1.24 16 27 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.06 2.29 6.28 -2.39 -0.01 2.28 16 30 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 31 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 32 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.09 2.38 6.05 -2.39 -0.01 2.37 16 35 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.04 1.04 7.23 -2.39 -0.02 1.03 16 Total: -1.00 -68.80 298.25 2.60 -66.20 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: 1.05 Total: 2.01 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: 4.45 Total: -16.44 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -3.40 Total: -89.32 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -1.53 Total: -8.72 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -68.80 2.60 -66.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933600091.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.233 kcal (2) G-P(sol) polarization free energy of solvation -68.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds