Wall clock time and date at job start Sun Mar 29 2020 22:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50701 * 119.99598 * 2 1 4 4 C 1.52998 * 109.46871 * 125.00464 * 3 2 1 5 5 H 1.08996 * 112.78913 * 65.80847 * 4 3 2 6 6 C 1.53509 * 113.47512 * 196.61587 * 4 3 2 7 7 C 1.53519 * 83.57745 * 140.78958 * 6 4 3 8 8 N 1.47480 * 113.47786 * 294.99774 * 4 3 2 9 9 C 1.46899 * 111.00197 * 106.52754 * 8 4 3 10 10 C 1.50698 * 109.46987 * 187.49769 * 9 8 4 11 11 O 1.21283 * 120.00472 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 9 14 14 C 1.50703 * 109.47138 * 180.28062 * 13 12 10 15 15 H 1.08001 * 120.00037 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99824 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00502 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99575 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47135 * 90.00187 * 18 16 14 20 20 H 1.48500 * 109.46751 * 210.00163 * 18 16 14 21 21 H 1.48503 * 109.47215 * 329.99996 * 18 16 14 22 22 H 1.07995 * 119.99740 * 180.02562 * 1 2 3 23 23 H 1.07993 * 119.99988 * 359.97438 * 1 2 3 24 24 H 1.07993 * 119.99988 * 180.02562 * 2 1 3 25 25 H 1.08996 * 109.47484 * 5.00434 * 3 2 1 26 26 H 1.09004 * 109.46892 * 244.99944 * 3 2 1 27 27 H 1.09005 * 114.17296 * 27.14555 * 6 4 3 28 28 H 1.09002 * 114.17519 * 254.43569 * 6 4 3 29 29 H 1.08999 * 113.47805 * 219.20823 * 7 6 4 30 30 H 1.09002 * 113.52647 * 88.74968 * 7 6 4 31 31 H 1.09003 * 109.46477 * 67.50259 * 9 8 4 32 32 H 1.08993 * 109.47002 * 307.50585 * 9 8 4 33 33 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 34 34 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 35 35 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 36 36 H 0.96997 * 120.00009 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0351 1.3331 1.1816 5 1 3.8275 0.5899 1.0942 6 6 3.5503 2.7398 1.5164 7 6 3.3988 2.2625 2.9676 8 7 2.3637 1.3245 2.4947 9 6 2.5010 0.0158 3.1476 10 6 1.6535 -0.0155 4.3933 11 8 0.9991 0.9565 4.7062 12 7 1.6220 -1.1240 5.1592 13 6 0.8028 -1.1523 6.3734 14 6 0.9476 -2.4932 7.0459 15 1 1.5856 -3.2489 6.6120 16 6 0.2646 -2.7556 8.2146 17 7 -0.5136 -1.8360 8.7422 18 14 0.4435 -4.4179 9.0478 19 1 1.5731 -4.3700 10.0106 20 1 -0.8107 -4.7461 9.7719 21 1 0.7104 -5.4591 8.0230 22 1 -0.5399 -0.9353 0.0004 23 1 -0.5400 0.9352 0.0004 24 1 1.8500 -0.9352 -0.0004 25 1 1.3586 2.1317 0.0896 26 1 2.6213 1.4027 -0.9314 27 1 2.8684 3.5431 1.2374 28 1 4.5809 2.9220 1.2118 29 1 3.0150 3.0302 3.6395 30 1 4.2880 1.7671 3.3578 31 1 3.5450 -0.1494 3.4142 32 1 2.1722 -0.7673 2.4646 33 1 2.1451 -1.9016 4.9088 34 1 1.1337 -0.3672 7.0534 35 1 -0.2423 -0.9887 6.1106 36 1 -0.9937 -2.0205 9.5645 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934472777.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:12 Heat of formation + Delta-G solvation = 12.631652 kcal Electronic energy + Delta-G solvation = -16718.213339 eV Core-core repulsion = 14010.851309 eV Total energy + Delta-G solvation = -2707.362030 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.41124 -38.22252 -34.59058 -34.06328 -32.30151 -31.00679 -28.53024 -27.37409 -24.86167 -23.43396 -22.26512 -19.91452 -19.67006 -19.51563 -17.08865 -16.25319 -15.73562 -15.53206 -15.15248 -14.85722 -14.36892 -13.97437 -13.60319 -13.56096 -12.83272 -12.71535 -12.03389 -11.88320 -11.72741 -11.55986 -11.38458 -11.11148 -10.98730 -10.90138 -10.81305 -10.49941 -10.29241 -9.36856 -9.27658 -9.00309 -8.70428 -8.59754 -7.80540 -6.14359 -4.21241 2.37037 3.25055 3.30987 3.33556 3.48146 3.75748 4.25912 4.35950 4.51315 4.66462 5.05592 5.10399 5.17594 5.21532 5.28586 5.34424 5.40454 5.40823 5.56244 5.65043 5.73539 5.84706 5.93169 6.01230 6.13095 6.39626 6.69361 6.83667 7.06082 7.36864 7.51471 7.56476 7.71459 8.00349 8.69537 8.83328 9.20675 9.45895 10.95923 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.036154 B = 0.004723 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.275081 B = 5926.510941 C = 6267.762094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.157 4.157 3 C -0.074 4.074 4 C 0.028 3.972 5 H 0.076 0.924 6 C -0.141 4.141 7 C -0.001 4.001 8 N -0.437 5.437 9 C 0.000 4.000 10 C 0.501 3.499 11 O -0.536 6.536 12 N -0.718 5.718 13 C 0.252 3.748 14 C -0.543 4.543 15 H 0.062 0.938 16 C 0.063 3.937 17 N -0.886 5.886 18 Si 0.903 3.097 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.273 1.273 22 H 0.093 0.907 23 H 0.096 0.904 24 H 0.102 0.898 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.388 0.612 34 H 0.025 0.975 35 H 0.026 0.974 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.025 4.141 -16.732 19.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.175 4.175 3 C -0.112 4.112 4 C -0.082 4.082 5 H 0.094 0.906 6 C -0.179 4.179 7 C -0.130 4.130 8 N -0.159 5.159 9 C -0.132 4.132 10 C 0.285 3.715 11 O -0.413 6.413 12 N -0.368 5.368 13 C 0.131 3.869 14 C -0.581 4.581 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 H 0.112 0.888 23 H 0.114 0.886 24 H 0.120 0.880 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.112 0.888 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.220 0.780 34 H 0.043 0.957 35 H 0.044 0.956 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.667 5.010 -16.231 18.637 hybrid contribution 1.106 -1.801 0.554 2.185 sum 8.773 3.209 -15.677 18.249 Atomic orbital electron populations 1.23807 0.96005 1.01741 1.00276 1.22749 0.96091 0.97943 1.00708 1.20649 0.97820 0.96219 0.96464 1.23429 0.95397 0.97288 0.92080 0.90626 1.23213 1.01382 0.96840 0.96424 1.23792 0.94160 0.97693 0.97308 1.68827 1.38883 1.06373 1.01805 1.22646 0.99181 0.94634 0.96782 1.20219 0.83071 0.83823 0.84429 1.90654 1.43699 1.34944 1.72032 1.46454 1.48487 1.14719 1.27130 1.19061 0.90389 0.97201 0.80269 1.21237 1.29006 0.99029 1.08817 0.91971 1.24955 0.94764 0.97457 0.96844 1.69978 1.28426 1.33636 1.20268 0.86423 0.77651 0.83368 0.79502 1.20480 1.20989 1.19771 0.88814 0.88596 0.88020 0.90702 0.90880 0.88817 0.90768 0.89298 0.91568 0.91714 0.88618 0.78004 0.95721 0.95623 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 14.32 29.01 0.42 -1.73 16 2 C -0.16 -1.74 8.56 -36.03 -0.31 -2.05 16 3 C -0.07 -0.75 5.71 -27.88 -0.16 -0.91 16 4 C 0.03 0.29 3.05 -71.43 -0.22 0.08 16 5 H 0.08 0.71 7.91 -51.93 -0.41 0.30 16 6 C -0.14 -1.36 8.01 -26.20 -0.21 -1.57 16 7 C 0.00 -0.01 7.69 -7.53 -0.06 -0.07 16 8 N -0.44 -6.40 5.46 -237.92 -1.30 -7.70 16 9 C 0.00 -0.01 5.20 -4.98 -0.03 -0.03 16 10 C 0.50 10.52 7.88 -10.99 -0.09 10.43 16 11 O -0.54 -13.68 16.43 5.55 0.09 -13.59 16 12 N -0.72 -15.66 5.55 -61.47 -0.34 -16.00 16 13 C 0.25 6.87 5.43 -5.19 -0.03 6.84 16 14 C -0.54 -14.99 9.28 -34.44 -0.32 -15.31 16 15 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 18 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 H 0.09 1.05 8.06 -52.49 -0.42 0.63 16 23 H 0.10 1.13 7.84 -52.49 -0.41 0.72 16 24 H 0.10 1.03 8.06 -52.49 -0.42 0.61 16 25 H 0.07 0.82 7.73 -51.93 -0.40 0.42 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.09 0.91 8.07 -51.93 -0.42 0.49 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.07 0.76 7.44 -51.93 -0.39 0.38 16 31 H 0.06 0.83 7.35 -51.93 -0.38 0.45 16 32 H 0.10 1.31 7.33 -51.93 -0.38 0.93 16 33 H 0.39 7.21 8.32 -40.82 -0.34 6.87 16 34 H 0.02 0.74 8.14 -51.92 -0.42 0.32 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 306.89 15.07 4.62 4.62 Total: -1.00 -33.16 306.89 -7.93 -41.09 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.62 Total: 3.96 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -1.09 Total: -2.64 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: -0.90 Total: -49.49 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.09 Total: -13.59 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.16 -7.93 -41.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934472777.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.724 kcal (2) G-P(sol) polarization free energy of solvation -33.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds