Wall clock time and date at job start Sun Mar 29 2020 22:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50701 * 119.99598 * 2 1 4 4 C 1.52998 * 109.46871 * 125.00464 * 3 2 1 5 5 H 1.08996 * 112.78913 * 65.80847 * 4 3 2 6 6 C 1.53509 * 113.47512 * 196.61587 * 4 3 2 7 7 C 1.53519 * 83.57745 * 140.78958 * 6 4 3 8 8 N 1.47480 * 113.47786 * 294.99774 * 4 3 2 9 9 C 1.46899 * 111.00197 * 106.52754 * 8 4 3 10 10 C 1.50698 * 109.46987 * 187.49769 * 9 8 4 11 11 O 1.21283 * 120.00472 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 9 14 14 C 1.50703 * 109.47138 * 180.28062 * 13 12 10 15 15 H 1.08001 * 120.00037 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99824 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00502 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99575 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47135 * 90.00187 * 18 16 14 20 20 H 1.48500 * 109.46751 * 210.00163 * 18 16 14 21 21 H 1.48503 * 109.47215 * 329.99996 * 18 16 14 22 22 H 1.07995 * 119.99740 * 180.02562 * 1 2 3 23 23 H 1.07993 * 119.99988 * 359.97438 * 1 2 3 24 24 H 1.07993 * 119.99988 * 180.02562 * 2 1 3 25 25 H 1.08996 * 109.47484 * 5.00434 * 3 2 1 26 26 H 1.09004 * 109.46892 * 244.99944 * 3 2 1 27 27 H 1.09005 * 114.17296 * 27.14555 * 6 4 3 28 28 H 1.09002 * 114.17519 * 254.43569 * 6 4 3 29 29 H 1.08999 * 113.47805 * 219.20823 * 7 6 4 30 30 H 1.09002 * 113.52647 * 88.74968 * 7 6 4 31 31 H 1.09003 * 109.46477 * 67.50259 * 9 8 4 32 32 H 1.08993 * 109.47002 * 307.50585 * 9 8 4 33 33 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 34 34 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 35 35 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 36 36 H 0.96997 * 120.00009 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0351 1.3331 1.1816 5 1 3.8275 0.5899 1.0942 6 6 3.5503 2.7398 1.5164 7 6 3.3988 2.2625 2.9676 8 7 2.3637 1.3245 2.4947 9 6 2.5010 0.0158 3.1476 10 6 1.6535 -0.0155 4.3933 11 8 0.9991 0.9565 4.7062 12 7 1.6220 -1.1240 5.1592 13 6 0.8028 -1.1523 6.3734 14 6 0.9476 -2.4932 7.0459 15 1 1.5856 -3.2489 6.6120 16 6 0.2646 -2.7556 8.2146 17 7 -0.5136 -1.8360 8.7422 18 14 0.4435 -4.4179 9.0478 19 1 1.5731 -4.3700 10.0106 20 1 -0.8107 -4.7461 9.7719 21 1 0.7104 -5.4591 8.0230 22 1 -0.5399 -0.9353 0.0004 23 1 -0.5400 0.9352 0.0004 24 1 1.8500 -0.9352 -0.0004 25 1 1.3586 2.1317 0.0896 26 1 2.6213 1.4027 -0.9314 27 1 2.8684 3.5431 1.2374 28 1 4.5809 2.9220 1.2118 29 1 3.0150 3.0302 3.6395 30 1 4.2880 1.7671 3.3578 31 1 3.5450 -0.1494 3.4142 32 1 2.1722 -0.7673 2.4646 33 1 2.1451 -1.9016 4.9088 34 1 1.1337 -0.3672 7.0534 35 1 -0.2423 -0.9887 6.1106 36 1 -0.9937 -2.0205 9.5645 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934472777.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:12 Heat of formation + Delta-G solvation = -12.734312 kcal Electronic energy + Delta-G solvation = -16719.313290 eV Core-core repulsion = 14010.851309 eV Total energy + Delta-G solvation = -2708.461981 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.47369 -39.89345 -36.11519 -35.43071 -34.35320 -32.22563 -29.56285 -29.18118 -26.29885 -24.31528 -24.20919 -21.41507 -20.66892 -20.53257 -18.93845 -17.48291 -17.47839 -16.81119 -16.60883 -16.24384 -15.80701 -15.55516 -14.81829 -14.51837 -14.43190 -14.11274 -13.93183 -13.51144 -12.94758 -12.83132 -12.70379 -12.53371 -12.25359 -12.20242 -11.99424 -11.93357 -11.49932 -11.35942 -10.81287 -10.73490 -10.06402 -9.82990 -9.68693 -8.30147 -6.47460 1.42095 1.45044 1.48997 1.56302 1.81118 2.28508 2.48942 3.04546 3.16456 3.55422 3.75792 4.01914 4.11168 4.26247 4.31686 4.36818 4.42811 4.49091 4.55478 4.77637 4.83021 5.02594 5.07109 5.10408 5.17225 5.21903 5.30273 5.44975 5.48231 5.69312 5.82724 5.83853 5.96841 6.13800 6.63948 6.95305 7.22596 7.54263 8.82332 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.036154 B = 0.004723 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.275081 B = 5926.510941 C = 6267.762094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.074 4.074 4 C 0.035 3.965 5 H 0.102 0.898 6 C -0.123 4.123 7 C -0.010 4.010 8 N -0.478 5.478 9 C 0.016 3.984 10 C 0.495 3.505 11 O -0.590 6.590 12 N -0.712 5.712 13 C 0.268 3.732 14 C -0.556 4.556 15 H 0.085 0.915 16 C 0.003 3.997 17 N -0.933 5.933 18 Si 0.987 3.013 19 H -0.269 1.269 20 H -0.284 1.284 21 H -0.255 1.255 22 H 0.094 0.906 23 H 0.086 0.914 24 H 0.118 0.882 25 H 0.059 0.941 26 H 0.102 0.898 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.407 0.593 34 H -0.016 1.016 35 H -0.018 1.018 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.539 2.287 -18.279 21.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.169 4.169 3 C -0.112 4.112 4 C -0.074 4.074 5 H 0.119 0.881 6 C -0.160 4.160 7 C -0.139 4.139 8 N -0.201 5.201 9 C -0.115 4.115 10 C 0.282 3.718 11 O -0.470 6.470 12 N -0.363 5.363 13 C 0.145 3.855 14 C -0.594 4.594 15 H 0.103 0.897 16 C -0.197 4.197 17 N -0.571 5.571 18 Si 0.810 3.190 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.178 1.178 22 H 0.113 0.887 23 H 0.105 0.895 24 H 0.135 0.865 25 H 0.078 0.922 26 H 0.120 0.880 27 H 0.107 0.893 28 H 0.124 0.876 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.134 0.866 33 H 0.243 0.757 34 H 0.002 0.998 35 H 0.000 1.000 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.222 3.142 -17.830 20.791 hybrid contribution 0.308 -1.129 1.007 1.544 sum 10.529 2.013 -16.822 19.948 Atomic orbital electron populations 1.23875 0.96800 1.01504 1.02230 1.23009 0.95840 0.99111 0.98937 1.20705 0.97713 0.95073 0.97668 1.23529 0.95543 0.98434 0.89876 0.88054 1.23147 1.03076 0.96214 0.93589 1.23889 0.94057 0.97140 0.98832 1.68807 1.40922 1.06216 1.04122 1.22557 0.99254 0.96024 0.93704 1.21413 0.82569 0.82279 0.85583 1.90627 1.45990 1.36766 1.73585 1.46206 1.48112 1.16207 1.25756 1.18490 0.88756 0.96469 0.81747 1.21623 1.29385 0.99196 1.09178 0.89724 1.26108 0.93956 1.02039 0.97577 1.70149 1.29571 1.36462 1.20941 0.85126 0.77671 0.77774 0.78446 1.19472 1.20959 1.17823 0.88716 0.89511 0.86459 0.92249 0.87965 0.89287 0.87609 0.92270 0.89981 0.88469 0.86578 0.75726 0.99800 0.99958 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.83 14.32 67.78 0.97 -3.86 16 2 C -0.15 -3.02 8.56 25.64 0.22 -2.80 16 3 C -0.07 -1.29 5.71 29.85 0.17 -1.12 16 4 C 0.03 0.62 3.05 42.19 0.13 0.75 16 5 H 0.10 1.36 7.91 -2.39 -0.02 1.34 16 6 C -0.12 -2.01 8.01 30.94 0.25 -1.77 16 7 C -0.01 -0.25 7.69 83.58 0.64 0.40 16 8 N -0.48 -13.26 5.46 -906.65 -4.95 -18.21 16 9 C 0.02 0.45 5.20 85.56 0.44 0.90 16 10 C 0.49 20.96 7.88 87.66 0.69 21.65 16 11 O -0.59 -31.46 16.43 -3.04 -0.05 -31.51 16 12 N -0.71 -31.27 5.55 -466.78 -2.59 -33.86 16 13 C 0.27 15.29 5.43 85.63 0.46 15.76 16 14 C -0.56 -30.87 9.28 25.60 0.24 -30.63 16 15 H 0.08 4.21 7.60 -2.91 -0.02 4.19 16 16 C 0.00 0.15 5.46 84.66 0.46 0.61 16 17 N -0.93 -57.44 13.29 21.45 0.28 -57.15 16 18 Si 0.99 42.73 29.54 68.60 2.03 44.76 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.25 -10.20 7.11 99.48 0.71 -9.50 16 22 H 0.09 2.11 8.06 -2.91 -0.02 2.09 16 23 H 0.09 2.12 7.84 -2.91 -0.02 2.10 16 24 H 0.12 1.97 8.06 -2.91 -0.02 1.95 16 25 H 0.06 1.23 7.73 -2.39 -0.02 1.21 16 26 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.09 1.55 8.07 -2.38 -0.02 1.53 16 28 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.08 1.67 7.44 -2.39 -0.02 1.65 16 31 H 0.10 2.13 7.35 -2.39 -0.02 2.11 16 32 H 0.12 2.80 7.33 -2.39 -0.02 2.78 16 33 H 0.41 14.56 8.32 -92.71 -0.77 13.79 16 34 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 35 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 36 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -76.06 306.89 -0.32 -76.38 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.28 Total: 19.71 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 4.68 Total: -0.11 kcal Atomic # 7 Polarization: -101.97 SS G_CDS: -7.25 Total: -109.22 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -0.05 Total: -31.51 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -76.06 -0.32 -76.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934472777.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.648 kcal (2) G-P(sol) polarization free energy of solvation -76.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds