Wall clock time and date at job start Sun Mar 29 2020 22:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50700 * 119.99922 * 2 1 4 4 C 1.52989 * 109.47000 * 125.00385 * 3 2 1 5 5 H 1.09000 * 112.79117 * 294.18666 * 4 3 2 6 6 C 1.53519 * 113.47668 * 163.37938 * 4 3 2 7 7 C 1.53516 * 83.57505 * 219.20674 * 6 4 3 8 8 N 1.47476 * 87.93205 * 26.02365 * 7 6 4 9 9 C 1.46895 * 110.99919 * 221.29407 * 8 7 6 10 10 C 1.50702 * 109.47359 * 294.36849 * 9 8 7 11 11 O 1.21280 * 119.99813 * 353.83055 * 10 9 8 12 12 N 1.34772 * 120.00080 * 173.82130 * 10 9 8 13 13 C 1.46500 * 119.99945 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.46991 * 180.02562 * 13 12 10 15 15 H 1.07994 * 120.00119 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99702 * 180.27789 * 14 13 12 17 17 N 1.31516 * 120.00343 * 359.72307 * 16 14 13 18 18 Si 1.86805 * 119.99925 * 179.72439 * 16 14 13 19 19 H 1.48502 * 109.47301 * 89.99766 * 18 16 14 20 20 H 1.48496 * 109.47000 * 210.00118 * 18 16 14 21 21 H 1.48503 * 109.47035 * 329.99668 * 18 16 14 22 22 H 1.08000 * 120.00116 * 359.97438 * 1 2 3 23 23 H 1.07998 * 119.99953 * 179.97438 * 1 2 3 24 24 H 1.07998 * 119.99896 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47337 * 4.99622 * 3 2 1 26 26 H 1.09004 * 109.46759 * 245.00696 * 3 2 1 27 27 H 1.09003 * 114.16887 * 105.56050 * 6 4 3 28 28 H 1.09001 * 114.17189 * 332.85740 * 6 4 3 29 29 H 1.08999 * 113.47909 * 271.25853 * 7 6 4 30 30 H 1.09001 * 113.52497 * 140.79644 * 7 6 4 31 31 H 1.09003 * 109.47068 * 174.36909 * 9 8 7 32 32 H 1.08997 * 109.47397 * 54.37634 * 9 8 7 33 33 H 0.97001 * 120.00032 * 0.02562 * 12 10 9 34 34 H 1.08998 * 109.47243 * 60.00637 * 13 12 10 35 35 H 1.09006 * 109.47035 * 300.00372 * 13 12 10 36 36 H 0.96997 * 120.00376 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1815 5 1 2.5270 1.3406 2.1458 6 6 4.1218 2.4099 1.0544 7 6 5.0263 1.3228 1.6516 8 7 4.1031 0.3203 1.0881 9 6 3.8732 -0.7763 2.0381 10 6 5.1573 -1.5366 2.2481 11 8 6.1353 -1.2706 1.5822 12 7 5.2189 -2.5121 3.1760 13 6 6.4674 -3.2508 3.3805 14 6 6.2711 -4.2783 4.4653 15 1 5.3125 -4.3714 4.9539 16 6 7.3173 -5.0952 4.8384 17 7 8.4849 -4.9814 4.2439 18 14 7.0763 -6.3637 6.1884 19 1 6.6173 -7.6427 5.5897 20 1 8.3627 -6.5824 6.8974 21 1 6.0575 -5.8741 7.1515 22 1 -0.5400 0.9353 0.0004 23 1 -0.5400 -0.9353 -0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3586 2.1317 0.0895 26 1 2.6212 1.4026 -0.9315 27 1 3.9730 3.2729 1.7034 28 1 4.3658 2.6786 0.0266 29 1 5.0495 1.3276 2.7414 30 1 6.0219 1.2935 1.2089 31 1 3.1137 -1.4490 1.6396 32 1 3.5331 -0.3676 2.9896 33 1 4.4365 -2.7250 3.7085 34 1 7.2556 -2.5577 3.6745 35 1 6.7498 -3.7505 2.4539 36 1 9.2208 -5.5563 4.5061 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934472778.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:14 Heat of formation + Delta-G solvation = 11.632993 kcal Electronic energy + Delta-G solvation = -16643.752564 eV Core-core repulsion = 13936.347229 eV Total energy + Delta-G solvation = -2707.405335 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.48115 -38.25193 -34.71702 -34.12167 -32.34913 -31.02994 -28.54904 -27.41115 -24.86466 -23.40169 -22.29788 -20.07887 -19.64641 -19.52285 -17.13287 -16.39544 -15.76725 -15.59785 -14.96413 -14.84052 -14.41748 -14.25516 -13.83216 -13.05263 -12.83195 -12.68615 -12.17957 -12.07949 -11.91835 -11.68336 -11.47438 -11.05333 -10.97014 -10.92618 -10.84438 -10.34908 -10.29414 -9.46496 -9.39784 -8.98656 -8.74629 -8.70676 -7.86489 -6.16823 -4.23913 2.20160 3.23831 3.29801 3.32166 3.39072 3.77538 4.18662 4.34747 4.51144 4.68870 4.94770 5.08410 5.18771 5.19172 5.28616 5.34648 5.36062 5.43371 5.60583 5.62875 5.71551 5.86979 5.91586 5.99609 6.15051 6.38768 6.57016 6.70575 7.04691 7.32217 7.45278 7.52141 7.67336 7.97040 8.63579 8.78802 9.12404 9.42945 10.93407 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.037441 B = 0.004530 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.660705 B = 6179.785923 C = 6671.478984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.142 4.142 3 C -0.076 4.076 4 C 0.028 3.972 5 H 0.077 0.923 6 C -0.144 4.144 7 C 0.008 3.992 8 N -0.443 5.443 9 C -0.001 4.001 10 C 0.497 3.503 11 O -0.540 6.540 12 N -0.715 5.715 13 C 0.251 3.749 14 C -0.544 4.544 15 H 0.062 0.938 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.273 1.273 22 H 0.093 0.907 23 H 0.094 0.906 24 H 0.111 0.889 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.062 0.938 33 H 0.389 0.611 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.013 12.624 -4.470 19.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.160 4.160 3 C -0.114 4.114 4 C -0.082 4.082 5 H 0.095 0.905 6 C -0.182 4.182 7 C -0.121 4.121 8 N -0.165 5.165 9 C -0.133 4.133 10 C 0.281 3.719 11 O -0.417 6.417 12 N -0.365 5.365 13 C 0.130 3.870 14 C -0.582 4.582 15 H 0.081 0.919 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.198 1.198 22 H 0.111 0.889 23 H 0.113 0.887 24 H 0.129 0.871 25 H 0.087 0.913 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.112 0.888 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.080 0.920 33 H 0.221 0.779 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.931 12.343 -5.562 18.721 hybrid contribution -0.661 -0.783 1.914 2.170 sum -13.591 11.561 -3.648 18.212 Atomic orbital electron populations 1.23814 0.95943 1.01537 1.03038 1.23014 0.95679 0.99102 0.98175 1.20678 0.97105 0.95135 0.98432 1.23485 0.93427 0.92835 0.98414 0.90549 1.23267 0.96185 0.96322 1.02388 1.23610 0.99275 0.90682 0.98485 1.68890 1.05286 1.02962 1.39387 1.22684 0.97706 0.96592 0.96316 1.20269 0.89381 0.81309 0.80943 1.90663 1.37344 1.66865 1.46850 1.46466 1.16768 1.35907 1.37310 1.19084 0.80545 0.90552 0.96793 1.21229 0.97993 1.18748 1.20217 0.91937 1.24955 0.94857 0.97383 0.96806 1.69976 1.01971 1.38895 1.41444 0.86416 0.77667 0.81368 0.81466 1.20433 1.20984 1.19767 0.88903 0.88730 0.87102 0.91277 0.90090 0.90806 0.88835 0.91741 0.88856 0.88200 0.92001 0.77857 0.95632 0.95572 0.92437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.87 14.32 29.01 0.42 -1.46 16 2 C -0.14 -1.46 9.18 -36.03 -0.33 -1.80 16 3 C -0.08 -0.74 5.71 -27.89 -0.16 -0.90 16 4 C 0.03 0.30 3.05 -71.43 -0.22 0.08 16 5 H 0.08 0.77 7.63 -51.93 -0.40 0.38 16 6 C -0.14 -1.47 8.01 -26.20 -0.21 -1.68 16 7 C 0.01 0.11 6.34 -7.54 -0.05 0.07 16 8 N -0.44 -6.39 5.81 -237.93 -1.38 -7.77 16 9 C 0.00 -0.02 5.32 -4.98 -0.03 -0.04 16 10 C 0.50 10.12 7.51 -10.99 -0.08 10.03 16 11 O -0.54 -13.23 15.40 5.56 0.09 -13.14 16 12 N -0.72 -15.27 5.55 -61.47 -0.34 -15.61 16 13 C 0.25 6.74 5.43 -5.19 -0.03 6.72 16 14 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16 15 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 18 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 22 H 0.09 0.73 7.84 -52.49 -0.41 0.32 16 23 H 0.09 0.80 8.06 -52.49 -0.42 0.38 16 24 H 0.11 1.29 7.08 -52.49 -0.37 0.92 16 25 H 0.07 0.55 7.79 -51.93 -0.40 0.15 16 26 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 0.92 8.07 -51.93 -0.42 0.50 16 29 H 0.06 0.88 7.84 -51.93 -0.41 0.47 16 30 H 0.09 1.48 7.97 -51.93 -0.41 1.07 16 31 H 0.10 1.35 7.08 -51.93 -0.37 0.98 16 32 H 0.06 0.79 7.56 -51.93 -0.39 0.40 16 33 H 0.39 7.10 8.32 -40.82 -0.34 6.76 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 304.16 15.07 4.58 4.58 Total: -1.00 -32.02 304.16 -8.01 -40.03 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.57 Total: 4.03 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -1.10 Total: -2.48 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: -0.99 Total: -48.93 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.09 Total: -13.14 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.02 -8.01 -40.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934472778.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.661 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds