Wall clock time and date at job start Sun Mar 29 2020 22:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50700 * 119.99922 * 2 1 4 4 C 1.52989 * 109.47000 * 125.00385 * 3 2 1 5 5 H 1.09000 * 112.79117 * 294.18666 * 4 3 2 6 6 C 1.53519 * 113.47668 * 163.37938 * 4 3 2 7 7 C 1.53516 * 83.57505 * 219.20674 * 6 4 3 8 8 N 1.47476 * 87.93205 * 26.02365 * 7 6 4 9 9 C 1.46895 * 110.99919 * 221.29407 * 8 7 6 10 10 C 1.50702 * 109.47359 * 294.36849 * 9 8 7 11 11 O 1.21280 * 119.99813 * 353.83055 * 10 9 8 12 12 N 1.34772 * 120.00080 * 173.82130 * 10 9 8 13 13 C 1.46500 * 119.99945 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.46991 * 180.02562 * 13 12 10 15 15 H 1.07994 * 120.00119 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99702 * 180.27789 * 14 13 12 17 17 N 1.31516 * 120.00343 * 359.72307 * 16 14 13 18 18 Si 1.86805 * 119.99925 * 179.72439 * 16 14 13 19 19 H 1.48502 * 109.47301 * 89.99766 * 18 16 14 20 20 H 1.48496 * 109.47000 * 210.00118 * 18 16 14 21 21 H 1.48503 * 109.47035 * 329.99668 * 18 16 14 22 22 H 1.08000 * 120.00116 * 359.97438 * 1 2 3 23 23 H 1.07998 * 119.99953 * 179.97438 * 1 2 3 24 24 H 1.07998 * 119.99896 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47337 * 4.99622 * 3 2 1 26 26 H 1.09004 * 109.46759 * 245.00696 * 3 2 1 27 27 H 1.09003 * 114.16887 * 105.56050 * 6 4 3 28 28 H 1.09001 * 114.17189 * 332.85740 * 6 4 3 29 29 H 1.08999 * 113.47909 * 271.25853 * 7 6 4 30 30 H 1.09001 * 113.52497 * 140.79644 * 7 6 4 31 31 H 1.09003 * 109.47068 * 174.36909 * 9 8 7 32 32 H 1.08997 * 109.47397 * 54.37634 * 9 8 7 33 33 H 0.97001 * 120.00032 * 0.02562 * 12 10 9 34 34 H 1.08998 * 109.47243 * 60.00637 * 13 12 10 35 35 H 1.09006 * 109.47035 * 300.00372 * 13 12 10 36 36 H 0.96997 * 120.00376 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1815 5 1 2.5270 1.3406 2.1458 6 6 4.1218 2.4099 1.0544 7 6 5.0263 1.3228 1.6516 8 7 4.1031 0.3203 1.0881 9 6 3.8732 -0.7763 2.0381 10 6 5.1573 -1.5366 2.2481 11 8 6.1353 -1.2706 1.5822 12 7 5.2189 -2.5121 3.1760 13 6 6.4674 -3.2508 3.3805 14 6 6.2711 -4.2783 4.4653 15 1 5.3125 -4.3714 4.9539 16 6 7.3173 -5.0952 4.8384 17 7 8.4849 -4.9814 4.2439 18 14 7.0763 -6.3637 6.1884 19 1 6.6173 -7.6427 5.5897 20 1 8.3627 -6.5824 6.8974 21 1 6.0575 -5.8741 7.1515 22 1 -0.5400 0.9353 0.0004 23 1 -0.5400 -0.9353 -0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3586 2.1317 0.0895 26 1 2.6212 1.4026 -0.9315 27 1 3.9730 3.2729 1.7034 28 1 4.3658 2.6786 0.0266 29 1 5.0495 1.3276 2.7414 30 1 6.0219 1.2935 1.2089 31 1 3.1137 -1.4490 1.6396 32 1 3.5331 -0.3676 2.9896 33 1 4.4365 -2.7250 3.7085 34 1 7.2556 -2.5577 3.6745 35 1 6.7498 -3.7505 2.4539 36 1 9.2208 -5.5563 4.5061 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934472778.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:14 Heat of formation + Delta-G solvation = -12.872622 kcal Electronic energy + Delta-G solvation = -16644.815207 eV Core-core repulsion = 13936.347229 eV Total energy + Delta-G solvation = -2708.467978 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.60295 -39.86836 -36.15447 -35.44320 -34.37927 -32.26198 -29.53270 -29.20120 -26.31461 -24.30668 -24.21504 -21.45574 -20.80784 -20.40995 -18.95448 -17.57258 -17.49606 -16.94402 -16.56665 -16.20414 -15.78152 -15.41670 -15.20566 -14.44207 -14.34001 -13.99959 -13.74131 -13.40832 -13.09669 -12.98500 -12.88024 -12.72279 -12.37093 -12.23916 -11.92760 -11.84423 -11.51022 -11.19624 -10.82157 -10.71176 -10.18438 -9.87616 -9.73481 -8.30974 -6.48195 1.41928 1.44611 1.47949 1.55823 1.73953 2.26980 2.47473 3.03835 3.07440 3.53823 3.74755 3.97635 4.15235 4.20973 4.27773 4.38821 4.42822 4.47043 4.57191 4.81765 4.85734 5.00791 5.08291 5.10659 5.19889 5.21011 5.27468 5.37642 5.46287 5.66234 5.82423 5.83929 5.96034 6.09396 6.62785 6.89890 7.21480 7.47953 8.81389 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.037441 B = 0.004530 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.660705 B = 6179.785923 C = 6671.478984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.162 4.162 3 C -0.071 4.071 4 C 0.035 3.965 5 H 0.093 0.907 6 C -0.125 4.125 7 C -0.003 4.003 8 N -0.471 5.471 9 C 0.015 3.985 10 C 0.493 3.507 11 O -0.587 6.587 12 N -0.709 5.709 13 C 0.268 3.732 14 C -0.557 4.557 15 H 0.084 0.916 16 C 0.003 3.997 17 N -0.932 5.932 18 Si 0.986 3.014 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.255 1.255 22 H 0.110 0.890 23 H 0.098 0.902 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.119 0.881 32 H 0.092 0.908 33 H 0.408 0.592 34 H -0.014 1.014 35 H -0.016 1.016 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.045 13.200 -3.218 21.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.180 4.180 3 C -0.109 4.109 4 C -0.073 4.073 5 H 0.111 0.889 6 C -0.162 4.162 7 C -0.132 4.132 8 N -0.194 5.194 9 C -0.116 4.116 10 C 0.280 3.720 11 O -0.468 6.468 12 N -0.360 5.360 13 C 0.145 3.855 14 C -0.595 4.595 15 H 0.102 0.898 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.809 3.191 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.178 1.178 22 H 0.128 0.872 23 H 0.116 0.884 24 H 0.110 0.890 25 H 0.112 0.888 26 H 0.089 0.911 27 H 0.119 0.881 28 H 0.114 0.886 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.137 0.863 32 H 0.110 0.890 33 H 0.243 0.757 34 H 0.004 0.996 35 H 0.002 0.998 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.023 12.940 -4.308 21.041 hybrid contribution 0.280 -0.919 1.443 1.734 sum -15.743 12.020 -2.865 20.013 Atomic orbital electron populations 1.23991 0.95502 1.02559 1.00854 1.22954 0.96188 0.98677 1.00228 1.20662 0.97095 0.95676 0.97424 1.23551 0.92964 0.91081 0.99730 0.88927 1.23217 0.94057 0.96195 1.02746 1.23628 0.98332 0.92820 0.98438 1.68911 1.07298 1.03683 1.39546 1.22606 0.94111 0.96673 0.98241 1.21330 0.90879 0.80525 0.79293 1.90641 1.39765 1.68005 1.48362 1.46209 1.15625 1.35947 1.38248 1.18513 0.82029 0.90012 0.94939 1.21618 0.99045 1.18645 1.20164 0.89773 1.26092 0.94260 0.99768 0.99489 1.70142 1.03215 1.40254 1.43423 0.85136 0.77927 0.78066 0.77958 1.19583 1.20895 1.17821 0.87207 0.88380 0.89010 0.88826 0.91071 0.88112 0.88590 0.91736 0.92282 0.86343 0.89021 0.75672 0.99582 0.99792 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.92 14.32 67.78 0.97 -1.95 16 2 C -0.16 -3.00 9.18 25.64 0.24 -2.76 16 3 C -0.07 -1.19 5.71 29.84 0.17 -1.02 16 4 C 0.04 0.67 3.05 42.19 0.13 0.80 16 5 H 0.09 1.50 7.63 -2.39 -0.02 1.48 16 6 C -0.12 -2.27 8.01 30.94 0.25 -2.03 16 7 C 0.00 -0.09 6.34 83.58 0.53 0.44 16 8 N -0.47 -13.22 5.81 -906.67 -5.27 -18.49 16 9 C 0.01 0.43 5.32 85.56 0.45 0.88 16 10 C 0.49 20.47 7.51 87.66 0.66 21.13 16 11 O -0.59 -30.32 15.40 -3.03 -0.05 -30.37 16 12 N -0.71 -30.76 5.55 -466.79 -2.59 -33.35 16 13 C 0.27 15.07 5.43 85.63 0.46 15.54 16 14 C -0.56 -30.70 9.28 25.60 0.24 -30.46 16 15 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 16 C 0.00 0.19 5.46 84.65 0.46 0.66 16 17 N -0.93 -56.94 13.29 21.45 0.28 -56.66 16 18 Si 0.99 42.54 29.54 68.60 2.03 44.56 16 19 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 20 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 22 H 0.11 1.30 7.84 -2.91 -0.02 1.28 16 23 H 0.10 1.40 8.06 -2.91 -0.02 1.38 16 24 H 0.09 2.03 7.08 -2.91 -0.02 2.01 16 25 H 0.09 1.12 7.79 -2.39 -0.02 1.10 16 26 H 0.07 1.33 8.08 -2.38 -0.02 1.31 16 27 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.10 1.72 8.07 -2.39 -0.02 1.70 16 29 H 0.06 1.73 7.84 -2.39 -0.02 1.71 16 30 H 0.06 1.99 7.97 -2.39 -0.02 1.97 16 31 H 0.12 2.97 7.08 -2.39 -0.02 2.95 16 32 H 0.09 2.08 7.56 -2.39 -0.02 2.07 16 33 H 0.41 14.47 8.32 -92.71 -0.77 13.70 16 34 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 35 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 36 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -72.98 304.16 -0.75 -73.73 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.28 Total: 19.33 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 4.56 Total: 1.24 kcal Atomic # 7 Polarization: -100.92 SS G_CDS: -7.58 Total: -108.50 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.05 Total: -30.37 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -72.98 -0.75 -73.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934472778.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.861 kcal (2) G-P(sol) polarization free energy of solvation -72.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds