Wall clock time and date at job start Sun Mar 29 2020 22:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46898 * 2 1 4 4 C 1.50693 * 109.47231 * 119.99816 * 2 1 3 5 5 O 1.21283 * 120.00526 * 240.00496 * 4 2 1 6 6 N 1.34782 * 120.00037 * 60.00229 * 4 2 1 7 7 C 1.46495 * 120.00093 * 179.97438 * 6 4 2 8 8 H 1.09004 * 115.49625 * 9.62094 * 7 6 4 9 9 C 1.52996 * 117.44500 * 224.23773 * 7 6 4 10 10 H 1.09003 * 119.54049 * 4.12205 * 9 7 6 11 11 C 1.54790 * 117.94164 * 160.75465 * 9 7 6 12 12 N 1.48150 * 104.41815 * 87.46648 * 11 9 7 13 13 C 1.36933 * 127.83528 * 140.36727 * 12 11 9 14 14 H 1.07998 * 120.00773 * 338.37365 * 13 12 11 15 15 C 1.38819 * 119.99655 * 158.37879 * 13 12 11 16 16 N 1.31615 * 120.00000 * 335.54352 * 15 13 12 17 17 Si 1.86803 * 120.00006 * 155.55040 * 15 13 12 18 18 H 1.48499 * 109.47195 * 89.99634 * 17 15 13 19 19 H 1.48507 * 109.46994 * 329.99965 * 17 15 13 20 20 H 1.48494 * 109.47086 * 210.00046 * 17 15 13 21 21 C 1.48141 * 104.32133 * 320.11100 * 12 11 9 22 22 C 1.53002 * 117.44354 * 154.99762 * 7 6 4 23 23 H 1.08999 * 120.26386 * 356.17338 * 22 7 6 24 24 H 1.08999 * 109.47691 * 299.99628 * 1 2 3 25 25 H 1.09004 * 109.47120 * 60.00172 * 1 2 3 26 26 H 1.09005 * 109.47188 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47025 * 240.00023 * 2 1 3 28 28 H 1.09002 * 109.47174 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47095 * 299.99844 * 3 2 1 30 30 H 1.08999 * 109.47264 * 60.00169 * 3 2 1 31 31 H 0.97002 * 119.99655 * 359.97438 * 6 4 2 32 32 H 1.08999 * 110.54193 * 328.72949 * 11 9 7 33 33 H 1.08999 * 110.46666 * 206.16921 * 11 9 7 34 34 H 0.97003 * 120.00000 * 354.38840 * 16 15 13 35 35 H 1.09001 * 110.40844 * 158.63097 * 21 12 11 36 36 H 1.09003 * 110.40914 * 280.93898 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2304 5 8 2.7295 -0.1209 2.0288 6 7 1.7068 -2.0007 1.4437 7 6 2.1956 -2.6914 2.6396 8 1 2.6753 -2.0569 3.3848 9 6 2.7453 -4.1079 2.4605 10 1 2.8216 -4.5323 1.4594 11 6 3.6623 -4.6758 3.5708 12 7 2.7277 -5.2877 4.5440 13 6 2.8818 -6.4611 5.2328 14 1 3.5579 -7.2186 4.8649 15 6 2.1687 -6.6770 6.4041 16 7 1.7396 -5.6534 7.1115 17 14 1.8184 -8.4203 6.9764 18 1 2.9216 -8.8837 7.8559 19 1 1.7155 -9.3172 5.7972 20 1 0.5398 -8.4461 7.7310 21 6 1.5918 -4.3389 4.6075 22 6 1.3821 -3.8837 3.1473 23 1 0.4435 -4.1543 2.6635 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.1488 -2.4720 0.8054 32 1 4.2321 -3.8754 4.0427 33 1 4.3333 -5.4310 3.1617 34 1 1.9901 -4.7507 6.8597 35 1 0.6988 -4.8397 4.9815 36 1 1.8424 -3.4877 5.2406 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958273004.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:11 Heat of formation + Delta-G solvation = 7.361938 kcal Electronic energy + Delta-G solvation = -16905.549862 eV Core-core repulsion = 14197.959320 eV Total energy + Delta-G solvation = -2707.590542 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.06646 -38.58027 -34.66652 -34.61037 -32.68568 -30.12177 -27.40637 -27.30436 -25.56768 -23.81220 -21.50682 -20.50863 -19.71101 -19.42175 -17.46144 -17.16599 -16.45446 -15.43023 -14.61310 -14.02960 -13.91104 -13.76723 -13.61349 -13.16075 -12.98782 -12.52876 -12.36448 -12.16434 -11.89311 -11.53294 -11.38602 -11.28908 -10.80126 -10.67977 -10.57283 -10.26679 -10.05939 -9.75991 -9.64806 -9.23586 -8.59964 -8.40186 -7.00562 -6.14757 -3.20596 2.60360 3.08257 3.48918 3.53199 3.68442 4.17531 4.48069 4.56038 4.66234 4.74561 5.02532 5.13951 5.23696 5.29334 5.35919 5.42876 5.47327 5.61201 5.67457 5.71956 5.78891 5.90167 5.92296 6.06173 6.14647 6.37150 6.59789 6.69583 6.75000 6.95337 6.97527 7.52983 7.73293 8.25088 8.43251 8.95646 9.76646 10.39722 11.21148 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.060596 B = 0.004588 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.964858 B = 6101.289698 C = 6163.188101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C -0.132 4.132 4 C 0.517 3.483 5 O -0.538 6.538 6 N -0.698 5.698 7 C 0.100 3.900 8 H 0.131 0.869 9 C -0.182 4.182 10 H 0.105 0.895 11 C 0.155 3.845 12 N -0.596 5.596 13 C -0.332 4.332 14 H 0.065 0.935 15 C -0.025 4.025 16 N -0.918 5.918 17 Si 1.072 2.928 18 H -0.293 1.293 19 H -0.292 1.292 20 H -0.285 1.285 21 C 0.166 3.834 22 C -0.177 4.177 23 H 0.106 0.894 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.096 0.904 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.399 0.601 32 H 0.027 0.973 33 H 0.054 0.946 34 H 0.269 0.731 35 H 0.068 0.932 36 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.067 9.050 -15.652 18.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.136 4.136 3 C -0.190 4.190 4 C 0.303 3.697 5 O -0.414 6.414 6 N -0.347 5.347 7 C -0.006 4.006 8 H 0.149 0.851 9 C -0.203 4.203 10 H 0.123 0.877 11 C 0.028 3.972 12 N -0.321 5.321 13 C -0.460 4.460 14 H 0.083 0.917 15 C -0.227 4.227 16 N -0.558 5.558 17 Si 0.901 3.099 18 H -0.221 1.221 19 H -0.219 1.219 20 H -0.211 1.211 21 C 0.040 3.960 22 C -0.199 4.199 23 H 0.124 0.876 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.114 0.886 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.233 0.767 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -3.319 8.421 -13.824 16.524 hybrid contribution 0.517 0.540 -1.650 1.811 sum -2.802 8.961 -15.473 18.099 Atomic orbital electron populations 1.21799 0.92902 1.02561 1.02973 1.21310 0.97593 0.98114 0.96568 1.21611 1.01855 0.93498 1.02043 1.20691 0.79928 0.81452 0.87606 1.90703 1.37731 1.65976 1.47029 1.45420 1.52824 1.11908 1.24554 1.21817 1.01290 0.88318 0.89136 0.85114 1.24459 0.98362 0.97384 1.00106 0.87727 1.21198 0.91599 0.95286 0.89095 1.45282 1.15038 1.22958 1.48815 1.19754 1.29835 0.91332 1.05048 0.91718 1.25896 0.99227 1.05729 0.91858 1.70735 1.47556 1.00113 1.37369 0.83447 0.76783 0.74293 0.75377 1.22067 1.21866 1.21084 1.21109 0.92857 0.92488 0.89556 1.24407 0.95209 1.00261 0.99987 0.87629 0.91885 0.91421 0.92130 0.88597 0.91921 0.92131 0.91854 0.76740 0.95564 0.92789 0.91989 0.91344 0.95413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.09 37.16 0.34 -0.75 16 2 C -0.11 -1.07 3.26 -91.78 -0.30 -1.37 16 3 C -0.13 -1.24 8.48 37.16 0.32 -0.92 16 4 C 0.52 7.11 7.15 -10.99 -0.08 7.03 16 5 O -0.54 -9.75 15.55 5.55 0.09 -9.66 16 6 N -0.70 -9.21 5.46 -53.81 -0.29 -9.51 16 7 C 0.10 1.69 5.97 -67.93 -0.41 1.29 16 8 H 0.13 2.53 7.40 -51.93 -0.38 2.14 16 9 C -0.18 -3.26 7.08 -89.01 -0.63 -3.89 16 10 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 11 C 0.15 3.36 7.06 -2.19 -0.02 3.34 16 12 N -0.60 -15.48 3.22 -168.61 -0.54 -16.02 16 13 C -0.33 -9.50 10.19 -15.06 -0.15 -9.66 16 14 H 0.07 1.83 7.94 -52.49 -0.42 1.42 16 15 C -0.03 -0.73 5.12 -17.43 -0.09 -0.82 16 16 N -0.92 -28.01 12.82 55.49 0.71 -27.30 16 17 Si 1.07 25.41 29.98 -169.99 -5.10 20.31 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 21 C 0.17 3.92 5.00 -2.41 -0.01 3.91 16 22 C -0.18 -3.28 7.06 -89.22 -0.63 -3.91 16 23 H 0.11 1.76 8.14 -51.93 -0.42 1.33 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.41 7.56 -51.93 -0.39 0.02 16 27 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 31 H 0.40 4.06 8.24 -40.82 -0.34 3.72 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.27 8.28 6.42 -40.82 -0.26 8.02 16 35 H 0.07 1.76 7.47 -51.93 -0.39 1.37 16 36 H 0.03 0.69 7.66 -51.93 -0.40 0.29 16 LS Contribution 297.82 15.07 4.49 4.49 Total: -1.00 -33.17 297.82 -7.90 -41.07 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.60 Total: 2.36 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -1.66 Total: -5.74 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.13 Total: -52.83 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.10 Total: 20.31 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.17 -7.90 -41.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958273004.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.433 kcal (2) G-P(sol) polarization free energy of solvation -33.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds