Wall clock time and date at job start Sun Mar 29 2020 22:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46898 * 2 1 4 4 C 1.50693 * 109.47231 * 119.99816 * 2 1 3 5 5 O 1.21283 * 120.00526 * 240.00496 * 4 2 1 6 6 N 1.34782 * 120.00037 * 60.00229 * 4 2 1 7 7 C 1.46495 * 120.00093 * 179.97438 * 6 4 2 8 8 H 1.09004 * 115.49625 * 9.62094 * 7 6 4 9 9 C 1.52996 * 117.44500 * 224.23773 * 7 6 4 10 10 H 1.09003 * 119.54049 * 4.12205 * 9 7 6 11 11 C 1.54790 * 117.94164 * 160.75465 * 9 7 6 12 12 N 1.48150 * 104.41815 * 87.46648 * 11 9 7 13 13 C 1.36933 * 127.83528 * 140.36727 * 12 11 9 14 14 H 1.07998 * 120.00773 * 338.37365 * 13 12 11 15 15 C 1.38819 * 119.99655 * 158.37879 * 13 12 11 16 16 N 1.31615 * 120.00000 * 335.54352 * 15 13 12 17 17 Si 1.86803 * 120.00006 * 155.55040 * 15 13 12 18 18 H 1.48499 * 109.47195 * 89.99634 * 17 15 13 19 19 H 1.48507 * 109.46994 * 329.99965 * 17 15 13 20 20 H 1.48494 * 109.47086 * 210.00046 * 17 15 13 21 21 C 1.48141 * 104.32133 * 320.11100 * 12 11 9 22 22 C 1.53002 * 117.44354 * 154.99762 * 7 6 4 23 23 H 1.08999 * 120.26386 * 356.17338 * 22 7 6 24 24 H 1.08999 * 109.47691 * 299.99628 * 1 2 3 25 25 H 1.09004 * 109.47120 * 60.00172 * 1 2 3 26 26 H 1.09005 * 109.47188 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47025 * 240.00023 * 2 1 3 28 28 H 1.09002 * 109.47174 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47095 * 299.99844 * 3 2 1 30 30 H 1.08999 * 109.47264 * 60.00169 * 3 2 1 31 31 H 0.97002 * 119.99655 * 359.97438 * 6 4 2 32 32 H 1.08999 * 110.54193 * 328.72949 * 11 9 7 33 33 H 1.08999 * 110.46666 * 206.16921 * 11 9 7 34 34 H 0.97003 * 120.00000 * 354.38840 * 16 15 13 35 35 H 1.09001 * 110.40844 * 158.63097 * 21 12 11 36 36 H 1.09003 * 110.40914 * 280.93898 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2304 5 8 2.7295 -0.1209 2.0288 6 7 1.7068 -2.0007 1.4437 7 6 2.1956 -2.6914 2.6396 8 1 2.6753 -2.0569 3.3848 9 6 2.7453 -4.1079 2.4605 10 1 2.8216 -4.5323 1.4594 11 6 3.6623 -4.6758 3.5708 12 7 2.7277 -5.2877 4.5440 13 6 2.8818 -6.4611 5.2328 14 1 3.5579 -7.2186 4.8649 15 6 2.1687 -6.6770 6.4041 16 7 1.7396 -5.6534 7.1115 17 14 1.8184 -8.4203 6.9764 18 1 2.9216 -8.8837 7.8559 19 1 1.7155 -9.3172 5.7972 20 1 0.5398 -8.4461 7.7310 21 6 1.5918 -4.3389 4.6075 22 6 1.3821 -3.8837 3.1473 23 1 0.4435 -4.1543 2.6635 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.1488 -2.4720 0.8054 32 1 4.2321 -3.8754 4.0427 33 1 4.3333 -5.4310 3.1617 34 1 1.9901 -4.7507 6.8597 35 1 0.6988 -4.8397 4.9815 36 1 1.8424 -3.4877 5.2406 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958273004.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:10 Heat of formation + Delta-G solvation = -15.208846 kcal Electronic energy + Delta-G solvation = -16906.528605 eV Core-core repulsion = 14197.959320 eV Total energy + Delta-G solvation = -2708.569285 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.33510 -40.07196 -36.35333 -35.49205 -34.32036 -31.95615 -29.18865 -28.01488 -27.44734 -25.01581 -23.12091 -22.04547 -21.06052 -20.81134 -19.54510 -18.18387 -17.80759 -16.42326 -16.20563 -15.83398 -15.42524 -15.29861 -15.00983 -14.80267 -13.91142 -13.80413 -13.61449 -13.33217 -13.16588 -12.85734 -12.65114 -12.55384 -12.33781 -12.06847 -11.99007 -11.90645 -11.86034 -11.66067 -10.99295 -10.77980 -10.63036 -9.81551 -9.13341 -8.41393 -5.44244 1.50329 1.57262 1.66166 1.84034 1.93319 2.61077 2.71107 3.16247 3.42371 3.60525 3.66732 3.77757 3.97278 3.98210 4.06342 4.23064 4.25773 4.44893 4.66010 4.74416 4.77512 4.82299 4.89605 4.94194 4.95331 5.08295 5.13644 5.17805 5.31862 5.33243 5.45535 5.59711 6.22109 6.48764 6.76144 7.19853 7.60469 8.27493 8.94170 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.060596 B = 0.004588 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.964858 B = 6101.289698 C = 6163.188101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 C -0.134 4.134 4 C 0.511 3.489 5 O -0.589 6.589 6 N -0.683 5.683 7 C 0.120 3.880 8 H 0.101 0.899 9 C -0.165 4.165 10 H 0.140 0.860 11 C 0.146 3.854 12 N -0.621 5.621 13 C -0.343 4.343 14 H 0.064 0.936 15 C -0.079 4.079 16 N -0.946 5.946 17 Si 1.126 2.874 18 H -0.281 1.281 19 H -0.271 1.271 20 H -0.288 1.288 21 C 0.169 3.831 22 C -0.172 4.172 23 H 0.135 0.865 24 H 0.046 0.954 25 H 0.092 0.908 26 H 0.072 0.928 27 H 0.127 0.873 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.043 0.957 31 H 0.419 0.581 32 H 0.014 0.986 33 H 0.061 0.939 34 H 0.252 0.748 35 H 0.039 0.961 36 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.950 8.520 -18.692 20.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 C -0.191 4.191 4 C 0.300 3.700 5 O -0.468 6.468 6 N -0.333 5.333 7 C 0.012 3.988 8 H 0.119 0.881 9 C -0.186 4.186 10 H 0.157 0.843 11 C 0.021 3.979 12 N -0.347 5.347 13 C -0.472 4.472 14 H 0.082 0.918 15 C -0.274 4.274 16 N -0.588 5.588 17 Si 0.949 3.051 18 H -0.208 1.208 19 H -0.196 1.196 20 H -0.214 1.214 21 C 0.043 3.957 22 C -0.193 4.193 23 H 0.153 0.847 24 H 0.065 0.935 25 H 0.111 0.889 26 H 0.091 0.909 27 H 0.145 0.855 28 H 0.066 0.934 29 H 0.110 0.890 30 H 0.062 0.938 31 H 0.257 0.743 32 H 0.032 0.968 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -4.206 7.900 -16.932 19.152 hybrid contribution 0.870 0.799 -0.709 1.377 sum -3.336 8.700 -17.641 19.950 Atomic orbital electron populations 1.21828 0.91132 1.03564 1.03491 1.21383 0.98820 0.97443 0.94885 1.21643 1.00966 0.93884 1.02627 1.21667 0.78790 0.81146 0.88384 1.90694 1.40037 1.66993 1.49086 1.45248 1.52751 1.11856 1.23444 1.21332 0.99916 0.87567 0.89957 0.88065 1.24335 0.96236 0.97967 1.00098 0.84280 1.21326 0.91979 0.95124 0.89481 1.45579 1.16903 1.22894 1.49280 1.20084 1.29534 0.92274 1.05260 0.91774 1.27430 0.99081 1.08718 0.92187 1.70868 1.49486 0.99835 1.38661 0.82744 0.76612 0.70001 0.75766 1.20750 1.19644 1.21417 1.20928 0.91063 0.91056 0.92658 1.24158 0.96877 1.01804 0.96478 0.84719 0.93457 0.88875 0.90920 0.85488 0.93404 0.89026 0.93763 0.74317 0.96815 0.92081 0.93815 0.94211 0.97875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.09 71.98 0.65 -0.97 16 2 C -0.10 -1.61 3.26 -11.54 -0.04 -1.65 16 3 C -0.13 -2.23 8.48 71.98 0.61 -1.62 16 4 C 0.51 13.18 7.15 87.65 0.63 13.81 16 5 O -0.59 -21.41 15.55 -3.04 -0.05 -21.46 16 6 N -0.68 -16.21 5.46 -442.54 -2.41 -18.63 16 7 C 0.12 3.91 5.97 44.99 0.27 4.18 16 8 H 0.10 4.02 7.40 -2.38 -0.02 4.00 16 9 C -0.17 -5.61 7.08 -9.75 -0.07 -5.68 16 10 H 0.14 3.85 8.14 -2.39 -0.02 3.83 16 11 C 0.15 6.37 7.06 86.67 0.61 6.99 16 12 N -0.62 -32.93 3.22 -687.36 -2.21 -35.14 16 13 C -0.34 -19.95 10.19 84.04 0.86 -19.09 16 14 H 0.06 3.65 7.94 -2.91 -0.02 3.63 16 15 C -0.08 -4.61 5.12 84.86 0.43 -4.17 16 16 N -0.95 -59.76 12.82 21.65 0.28 -59.48 16 17 Si 1.13 51.41 29.98 68.60 2.06 53.47 16 18 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 20 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 21 C 0.17 8.25 5.00 86.53 0.43 8.69 16 22 C -0.17 -6.17 7.06 -9.89 -0.07 -6.24 16 23 H 0.14 4.09 8.14 -2.39 -0.02 4.07 16 24 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 26 H 0.07 0.67 7.56 -2.38 -0.02 0.65 16 27 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 29 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.04 0.90 8.10 -2.39 -0.02 0.88 16 31 H 0.42 6.73 8.24 -92.71 -0.76 5.96 16 32 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.25 16.35 6.42 -92.71 -0.59 15.75 16 35 H 0.04 2.13 7.47 -2.39 -0.02 2.11 16 36 H 0.00 0.18 7.66 -2.39 -0.02 0.16 16 Total: -1.00 -75.53 297.82 2.45 -73.08 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.47 Total: 13.92 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 4.32 Total: -5.76 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -4.35 Total: -113.25 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.05 Total: -21.46 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 2.06 Total: 53.47 kcal Total: -75.53 2.45 -73.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958273004.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.872 kcal (2) G-P(sol) polarization free energy of solvation -75.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds