Wall clock time and date at job start Sun Mar 29 2020 22:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 119.99997 * 2 1 4 4 H 1.48503 * 109.46734 * 269.99520 * 3 2 1 5 5 H 1.48500 * 109.47149 * 29.99458 * 3 2 1 6 6 H 1.48497 * 109.46944 * 149.99981 * 3 2 1 7 7 C 1.38810 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99823 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00443 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00094 * 180.02562 * 9 7 2 11 11 H 1.08994 * 110.91605 * 37.44671 * 10 9 7 12 12 C 1.55159 * 110.99960 * 273.54255 * 10 9 7 13 13 C 1.54324 * 102.94134 * 206.42552 * 12 10 9 14 14 N 1.47020 * 107.39983 * 22.11770 * 13 12 10 15 15 C 1.34780 * 125.64983 * 181.10309 * 14 13 12 16 16 O 1.21276 * 120.00190 * 180.02562 * 15 14 13 17 17 C 1.50704 * 119.99770 * 0.02562 * 15 14 13 18 18 C 1.52998 * 109.47111 * 179.97438 * 17 15 14 19 19 C 1.53000 * 117.50182 * 243.74979 * 18 17 15 20 20 C 1.52997 * 117.49643 * 175.08950 * 18 17 15 21 21 C 1.47743 * 108.53125 * 1.18235 * 14 13 12 22 22 H 0.97002 * 119.99873 * 0.02562 * 1 2 3 23 23 H 0.97001 * 119.98906 * 359.97438 * 9 7 2 24 24 H 1.09004 * 110.72010 * 88.06342 * 12 10 9 25 25 H 1.08995 * 110.87585 * 324.86191 * 12 10 9 26 26 H 1.09002 * 109.88322 * 141.61300 * 13 12 10 27 27 H 1.09000 * 109.88025 * 262.62465 * 13 12 10 28 28 H 1.08992 * 109.47408 * 300.00360 * 17 15 14 29 29 H 1.09005 * 109.47188 * 60.00318 * 17 15 14 30 30 H 1.08994 * 115.54870 * 29.42094 * 18 17 15 31 31 H 1.09009 * 117.49600 * 359.97438 * 19 18 17 32 32 H 1.08989 * 117.50137 * 145.02340 * 19 18 17 33 33 H 1.09009 * 117.49980 * 214.97959 * 20 18 17 34 34 H 1.09004 * 117.50372 * 359.97438 * 20 18 17 35 35 H 1.09003 * 110.29227 * 216.94505 * 21 14 13 36 36 H 1.08996 * 110.53057 * 94.67717 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9522 -3.5894 0.6214 12 6 2.4148 -4.0943 -1.4436 13 6 2.5182 -5.6294 -1.3245 14 7 1.7472 -6.0313 -0.1390 15 6 1.6093 -7.2917 0.3182 16 8 0.9461 -7.5078 1.3103 17 6 2.2794 -8.4325 -0.4034 18 6 1.9661 -9.7457 0.3165 19 6 3.1384 -10.5083 0.9370 20 6 2.4625 -11.0410 -0.3289 21 6 1.1487 -4.8226 0.4639 22 1 -0.4850 0.8401 -0.0004 23 1 0.3556 -2.3880 0.0005 24 1 3.3687 -3.6662 -1.7518 25 1 1.6249 -3.8139 -2.1404 26 1 2.1008 -6.0993 -2.2151 27 1 3.5613 -5.9225 -1.2052 28 1 1.9096 -8.4820 -1.4275 29 1 3.3576 -8.2726 -0.4139 30 1 1.0108 -9.7783 0.8403 31 1 4.1330 -10.0747 0.8320 32 1 2.9542 -11.0430 1.8688 33 1 1.8339 -11.9260 -0.2294 34 1 3.0119 -10.9577 -1.2667 35 1 1.1544 -4.9000 1.5512 36 1 0.1315 -4.6775 0.1001 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966064574.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:19 Heat of formation + Delta-G solvation = -1.533745 kcal Electronic energy + Delta-G solvation = -16659.422726 eV Core-core repulsion = 13951.446438 eV Total energy + Delta-G solvation = -2707.976288 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.87708 -37.79273 -36.72519 -34.14170 -31.65606 -29.86510 -29.42080 -27.35878 -23.77830 -22.83539 -22.54294 -20.90111 -20.07167 -18.97783 -17.35974 -16.98371 -16.19790 -15.69138 -14.95688 -14.55664 -14.28334 -13.86389 -13.56753 -13.21820 -12.83910 -12.65023 -12.30959 -11.90598 -11.70171 -11.66193 -11.49794 -11.17457 -10.87043 -10.70363 -10.51606 -10.33316 -10.15928 -10.06945 -9.79389 -9.61163 -8.97768 -8.40777 -7.06745 -5.84022 -3.14807 2.79549 3.12088 3.39765 3.45295 3.47042 3.66285 4.49441 4.53224 4.57413 4.75823 4.94508 5.03932 5.20128 5.29950 5.32944 5.42142 5.45410 5.54029 5.56996 5.60656 5.70979 5.76852 5.93017 5.97218 6.13009 6.17428 6.23934 6.36803 6.54418 6.60032 6.89860 7.63633 7.74914 8.32539 8.34678 9.44974 9.99016 10.33923 11.38211 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.066278 B = 0.004176 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.361846 B = 6702.709047 C = 6852.487060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.715 5.715 10 C 0.172 3.828 11 H 0.063 0.937 12 C -0.155 4.155 13 C 0.101 3.899 14 N -0.616 5.616 15 C 0.527 3.473 16 O -0.546 6.546 17 C -0.105 4.105 18 C -0.139 4.139 19 C -0.179 4.179 20 C -0.182 4.182 21 C 0.099 3.901 22 H 0.257 0.743 23 H 0.386 0.614 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.118 0.882 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.465 -17.593 -3.590 19.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.356 5.356 10 C 0.060 3.940 11 H 0.081 0.919 12 C -0.196 4.196 13 C -0.022 4.022 14 N -0.350 5.350 15 C 0.316 3.684 16 O -0.423 6.423 17 C -0.145 4.145 18 C -0.157 4.157 19 C -0.216 4.216 20 C -0.219 4.219 21 C -0.024 4.024 22 H 0.067 0.933 23 H 0.221 0.779 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.136 0.864 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.210 -17.613 -3.007 18.916 hybrid contribution 0.204 0.973 -0.198 1.014 sum 6.414 -16.640 -3.205 18.119 Atomic orbital electron populations 1.69667 1.05164 1.25907 1.57037 1.24779 0.95538 0.97830 1.02521 0.86161 0.78669 0.83620 0.77537 1.21629 1.21709 1.20668 1.19210 0.91057 0.83782 1.43521 0.90971 1.42261 1.05836 0.99339 1.88154 1.21290 0.94206 0.85666 0.92873 0.91937 1.23411 1.02854 0.91297 1.02056 1.22094 0.95195 0.97567 0.87383 1.48566 1.51023 1.06311 1.29090 1.20179 0.81096 0.82510 0.84624 1.90678 1.41541 1.83626 1.26499 1.21183 1.01592 0.91754 0.99941 1.22071 1.00056 0.90536 1.03061 1.23037 0.97145 1.04217 0.97171 1.23005 1.04243 0.97496 0.97157 1.22572 0.97522 0.83540 0.98760 0.93335 0.77926 0.90734 0.90523 0.92055 0.91955 0.88674 0.88981 0.86408 0.88864 0.88801 0.88767 0.88816 0.90626 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.58 13.06 55.49 0.72 -26.85 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.24 -6.58 9.98 -15.06 -0.15 -6.73 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.72 -17.40 5.28 -51.35 -0.27 -17.67 16 10 C 0.17 3.30 3.69 -65.78 -0.24 3.06 16 11 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 12 C -0.15 -2.48 6.65 -24.90 -0.17 -2.64 16 13 C 0.10 1.30 6.48 -3.06 -0.02 1.28 16 14 N -0.62 -9.47 3.34 -170.26 -0.57 -10.04 16 15 C 0.53 8.10 7.85 -10.98 -0.09 8.01 16 16 O -0.55 -10.42 15.84 5.56 0.09 -10.33 16 17 C -0.10 -1.14 5.17 -27.88 -0.14 -1.28 16 18 C -0.14 -1.50 5.41 -90.62 -0.49 -1.99 16 19 C -0.18 -1.66 10.18 -26.69 -0.27 -1.93 16 20 C -0.18 -1.52 10.25 -26.70 -0.27 -1.79 16 21 C 0.10 1.78 6.55 -2.35 -0.02 1.76 16 22 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 23 H 0.39 10.03 7.71 -40.82 -0.31 9.72 16 24 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.09 0.85 7.87 -51.93 -0.41 0.44 16 30 H 0.12 1.51 7.31 -51.93 -0.38 1.13 16 31 H 0.09 0.79 8.03 -51.92 -0.42 0.38 16 32 H 0.09 0.84 8.14 -51.94 -0.42 0.41 16 33 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 1.43 8.05 -51.93 -0.42 1.01 16 36 H 0.07 1.27 8.00 -51.93 -0.42 0.86 16 LS Contribution 302.46 15.07 4.56 4.56 Total: -1.00 -30.98 302.46 -8.15 -39.13 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -5.70 Total: 6.99 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -1.96 Total: -2.65 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.11 Total: -54.56 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.98 -8.15 -39.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966064574.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.596 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds