Wall clock time and date at job start Sun Mar 29 2020 22:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 119.99997 * 2 1 4 4 H 1.48503 * 109.46734 * 269.99520 * 3 2 1 5 5 H 1.48500 * 109.47149 * 29.99458 * 3 2 1 6 6 H 1.48497 * 109.46944 * 149.99981 * 3 2 1 7 7 C 1.38810 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99823 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00443 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00094 * 180.02562 * 9 7 2 11 11 H 1.08994 * 110.91605 * 37.44671 * 10 9 7 12 12 C 1.55159 * 110.99960 * 273.54255 * 10 9 7 13 13 C 1.54324 * 102.94134 * 206.42552 * 12 10 9 14 14 N 1.47020 * 107.39983 * 22.11770 * 13 12 10 15 15 C 1.34780 * 125.64983 * 181.10309 * 14 13 12 16 16 O 1.21276 * 120.00190 * 180.02562 * 15 14 13 17 17 C 1.50704 * 119.99770 * 0.02562 * 15 14 13 18 18 C 1.52998 * 109.47111 * 179.97438 * 17 15 14 19 19 C 1.53000 * 117.50182 * 243.74979 * 18 17 15 20 20 C 1.52997 * 117.49643 * 175.08950 * 18 17 15 21 21 C 1.47743 * 108.53125 * 1.18235 * 14 13 12 22 22 H 0.97002 * 119.99873 * 0.02562 * 1 2 3 23 23 H 0.97001 * 119.98906 * 359.97438 * 9 7 2 24 24 H 1.09004 * 110.72010 * 88.06342 * 12 10 9 25 25 H 1.08995 * 110.87585 * 324.86191 * 12 10 9 26 26 H 1.09002 * 109.88322 * 141.61300 * 13 12 10 27 27 H 1.09000 * 109.88025 * 262.62465 * 13 12 10 28 28 H 1.08992 * 109.47408 * 300.00360 * 17 15 14 29 29 H 1.09005 * 109.47188 * 60.00318 * 17 15 14 30 30 H 1.08994 * 115.54870 * 29.42094 * 18 17 15 31 31 H 1.09009 * 117.49600 * 359.97438 * 19 18 17 32 32 H 1.08989 * 117.50137 * 145.02340 * 19 18 17 33 33 H 1.09009 * 117.49980 * 214.97959 * 20 18 17 34 34 H 1.09004 * 117.50372 * 359.97438 * 20 18 17 35 35 H 1.09003 * 110.29227 * 216.94505 * 21 14 13 36 36 H 1.08996 * 110.53057 * 94.67717 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9522 -3.5894 0.6214 12 6 2.4148 -4.0943 -1.4436 13 6 2.5182 -5.6294 -1.3245 14 7 1.7472 -6.0313 -0.1390 15 6 1.6093 -7.2917 0.3182 16 8 0.9461 -7.5078 1.3103 17 6 2.2794 -8.4325 -0.4034 18 6 1.9661 -9.7457 0.3165 19 6 3.1384 -10.5083 0.9370 20 6 2.4625 -11.0410 -0.3289 21 6 1.1487 -4.8226 0.4639 22 1 -0.4850 0.8401 -0.0004 23 1 0.3556 -2.3880 0.0005 24 1 3.3687 -3.6662 -1.7518 25 1 1.6249 -3.8139 -2.1404 26 1 2.1008 -6.0993 -2.2151 27 1 3.5613 -5.9225 -1.2052 28 1 1.9096 -8.4820 -1.4275 29 1 3.3576 -8.2726 -0.4139 30 1 1.0108 -9.7783 0.8403 31 1 4.1330 -10.0747 0.8320 32 1 2.9542 -11.0430 1.8688 33 1 1.8339 -11.9260 -0.2294 34 1 3.0119 -10.9577 -1.2667 35 1 1.1544 -4.9000 1.5512 36 1 0.1315 -4.6775 0.1001 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966064574.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:18 Heat of formation + Delta-G solvation = -21.396971 kcal Electronic energy + Delta-G solvation = -16660.284060 eV Core-core repulsion = 13951.446438 eV Total energy + Delta-G solvation = -2708.837622 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.10182 -38.96185 -37.74720 -35.92625 -33.39198 -31.27968 -30.59007 -28.80937 -25.64251 -24.17858 -23.19445 -21.86735 -21.52216 -20.10215 -19.28509 -18.17896 -17.50684 -16.82015 -16.38958 -16.05570 -15.38844 -15.21447 -14.98176 -14.57101 -14.32050 -13.88121 -13.53756 -13.19715 -13.11788 -13.00957 -12.68061 -12.39309 -12.32184 -12.25785 -12.13812 -11.76091 -11.61247 -11.28279 -10.98173 -10.94432 -10.75263 -9.67309 -9.05812 -7.95602 -5.26180 1.49345 1.51003 1.59335 1.62431 1.92924 2.57086 2.93967 3.35324 3.53714 3.71955 3.79236 3.91835 4.01122 4.10392 4.19715 4.25924 4.35203 4.50068 4.53905 4.67106 4.70966 4.77646 4.83297 4.85754 5.01342 5.06937 5.21871 5.25535 5.30283 5.37786 5.42901 5.53792 6.25098 6.56574 7.14167 7.31639 8.03034 8.27101 9.27873 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.066278 B = 0.004176 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.361846 B = 6702.709047 C = 6852.487060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.075 4.075 3 Si 0.975 3.025 4 H -0.285 1.285 5 H -0.299 1.299 6 H -0.268 1.268 7 C -0.241 4.241 8 H 0.082 0.918 9 N -0.731 5.731 10 C 0.165 3.835 11 H 0.060 0.940 12 C -0.145 4.145 13 C 0.107 3.893 14 N -0.616 5.616 15 C 0.520 3.480 16 O -0.593 6.593 17 C -0.091 4.091 18 C -0.165 4.165 19 C -0.183 4.183 20 C -0.159 4.159 21 C 0.107 3.893 22 H 0.251 0.749 23 H 0.373 0.627 24 H 0.086 0.914 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.056 0.944 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.929 -19.067 -5.228 21.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.212 1.212 5 H -0.226 1.226 6 H -0.193 1.193 7 C -0.372 4.372 8 H 0.100 0.900 9 N -0.371 5.371 10 C 0.055 3.945 11 H 0.078 0.922 12 C -0.186 4.186 13 C -0.015 4.015 14 N -0.350 5.350 15 C 0.311 3.689 16 O -0.474 6.474 17 C -0.131 4.131 18 C -0.183 4.183 19 C -0.220 4.220 20 C -0.196 4.196 21 C -0.018 4.018 22 H 0.060 0.940 23 H 0.205 0.795 24 H 0.104 0.896 25 H 0.080 0.920 26 H 0.110 0.890 27 H 0.114 0.886 28 H 0.138 0.862 29 H 0.136 0.864 30 H 0.105 0.895 31 H 0.124 0.876 32 H 0.108 0.892 33 H 0.118 0.882 34 H 0.133 0.867 35 H 0.074 0.926 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.736 -19.136 -4.674 21.549 hybrid contribution -0.561 1.335 0.356 1.491 sum 8.175 -17.802 -4.318 20.059 Atomic orbital electron populations 1.69831 1.06762 1.26164 1.59332 1.25602 0.96344 1.01244 1.03539 0.85112 0.77673 0.79294 0.77492 1.21164 1.22608 1.19263 1.19616 0.91615 0.84713 1.41281 0.90023 1.42428 1.05438 1.00633 1.88552 1.21448 0.93692 0.84082 0.95298 0.92174 1.23207 1.02797 0.93937 0.98619 1.22236 0.96993 0.94971 0.87299 1.48664 1.51048 1.05604 1.29669 1.21139 0.80416 0.83126 0.84179 1.90660 1.43679 1.84268 1.28818 1.21219 1.02497 0.89136 1.00199 1.21987 0.99505 0.92029 1.04807 1.23146 0.97091 1.03962 0.97791 1.23103 1.03140 0.95910 0.97450 1.22242 0.96932 0.84811 0.97771 0.94001 0.79451 0.89558 0.91951 0.89030 0.88575 0.86160 0.86361 0.89470 0.87645 0.89192 0.88206 0.86693 0.92559 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.97 13.06 21.65 0.28 -58.69 16 2 C -0.08 -4.23 5.50 84.86 0.47 -3.76 16 3 Si 0.98 45.18 29.55 68.60 2.03 47.21 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.24 -12.95 9.98 84.03 0.84 -12.11 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 9 N -0.73 -36.12 5.28 -316.38 -1.67 -37.79 16 10 C 0.16 6.29 3.69 46.38 0.17 6.46 16 11 H 0.06 2.32 8.13 -2.39 -0.02 2.31 16 12 C -0.14 -4.33 6.65 31.78 0.21 -4.11 16 13 C 0.11 2.34 6.48 86.73 0.56 2.90 16 14 N -0.62 -17.95 3.34 -810.98 -2.71 -20.65 16 15 C 0.52 15.30 7.85 87.66 0.69 15.99 16 16 O -0.59 -23.08 15.84 -3.02 -0.05 -23.13 16 17 C -0.09 -1.68 5.17 29.85 0.15 -1.52 16 18 C -0.16 -3.27 5.41 -10.80 -0.06 -3.33 16 19 C -0.18 -2.97 10.18 30.62 0.31 -2.66 16 20 C -0.16 -2.14 10.25 30.62 0.31 -1.83 16 21 C 0.11 3.88 6.55 86.79 0.57 4.45 16 22 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 23 H 0.37 20.12 7.71 -92.71 -0.71 19.40 16 24 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 25 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.12 1.60 7.87 -2.38 -0.02 1.58 16 30 H 0.09 2.28 7.31 -2.39 -0.02 2.26 16 31 H 0.11 1.45 8.03 -2.38 -0.02 1.43 16 32 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.11 1.09 8.14 -2.39 -0.02 1.08 16 35 H 0.06 2.23 8.05 -2.39 -0.02 2.21 16 36 H 0.05 2.14 8.00 -2.39 -0.02 2.12 16 Total: -1.00 -69.27 302.46 2.46 -66.81 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: 0.34 Total: 25.77 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 4.23 Total: 0.47 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -4.09 Total: -117.13 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.05 Total: -23.13 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -69.27 2.46 -66.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966064574.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.416 kcal (2) G-P(sol) polarization free energy of solvation -69.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds