Wall clock time and date at job start Sun Mar 29 2020 22:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50693 * 120.00148 * 2 1 4 4 C 1.32999 * 119.99965 * 180.02562 * 2 1 3 5 5 C 1.47102 * 119.99961 * 359.97438 * 4 2 1 6 6 O 1.21616 * 120.00029 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99941 * 179.97438 * 5 4 2 8 8 C 1.47018 * 125.65075 * 0.04399 * 7 5 4 9 9 C 1.54317 * 107.27559 * 181.02260 * 8 7 5 10 10 C 1.55160 * 102.94328 * 22.19141 * 9 8 7 11 11 H 1.09003 * 111.03421 * 82.58301 * 10 9 8 12 12 N 1.46490 * 111.00678 * 206.42332 * 10 9 8 13 13 C 1.36935 * 120.00121 * 198.64617 * 12 10 9 14 14 H 1.07997 * 120.00139 * 0.02562 * 13 12 10 15 15 C 1.38816 * 120.00401 * 180.02562 * 13 12 10 16 16 N 1.31624 * 119.99569 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00172 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.46685 * 269.99637 * 17 15 13 19 19 H 1.48494 * 109.47357 * 29.99716 * 17 15 13 20 20 H 1.48502 * 109.47120 * 150.00435 * 17 15 13 21 21 C 1.47429 * 125.64735 * 180.02562 * 7 5 4 22 22 H 1.09007 * 109.46660 * 239.99690 * 1 2 3 23 23 H 1.08997 * 109.46853 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47177 * 120.00170 * 1 2 3 25 25 H 1.08997 * 109.47571 * 270.00437 * 3 2 1 26 26 H 1.09006 * 109.47121 * 30.00222 * 3 2 1 27 27 H 1.09001 * 109.47458 * 150.00084 * 3 2 1 28 28 H 1.07996 * 120.00128 * 179.97438 * 4 2 1 29 29 H 1.09003 * 109.87961 * 300.44252 * 8 7 5 30 30 H 1.09007 * 109.88087 * 61.44833 * 8 7 5 31 31 H 1.09002 * 110.72264 * 263.82858 * 9 8 7 32 32 H 1.09000 * 110.72562 * 140.55869 * 9 8 7 33 33 H 0.97000 * 120.00577 * 18.65217 * 12 10 9 34 34 H 0.97001 * 119.99885 * 359.97438 * 16 15 13 35 35 H 1.08995 * 110.36765 * 37.06360 * 21 7 5 36 36 H 1.09005 * 110.36395 * 274.74563 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1720 -1.1518 -0.0005 5 6 1.4365 -2.4257 -0.0005 6 8 0.2203 -2.4257 -0.0005 7 7 2.1104 -3.5929 -0.0016 8 6 3.5734 -3.7377 -0.0018 9 6 3.8844 -5.2489 -0.0294 10 6 2.5839 -5.8607 -0.6142 11 1 2.5783 -5.8008 -1.7026 12 7 2.4068 -7.2442 -0.1664 13 6 1.5609 -8.0805 -0.8447 14 1 1.0246 -7.7203 -1.7101 15 6 1.3927 -9.3914 -0.4200 16 7 2.0459 -9.8303 0.6350 17 14 0.2392 -10.5324 -1.3459 18 1 -1.1252 -10.4322 -0.7681 19 1 0.2003 -10.1415 -2.7779 20 1 0.7255 -11.9305 -1.2273 21 6 1.5024 -4.9360 -0.0022 22 1 -0.3633 -0.5139 0.8900 23 1 -0.3633 1.0277 0.0005 24 1 -0.3633 -0.5139 -0.8900 25 1 2.4422 1.6198 -1.0276 26 1 1.6715 2.0647 0.5139 27 1 3.2130 1.1747 0.5138 28 1 3.2520 -1.1518 -0.0009 29 1 3.9933 -3.2566 -0.8852 30 1 3.9906 -3.2874 0.8989 31 1 4.0678 -5.6234 0.9777 32 1 4.7343 -5.4561 -0.6796 33 1 2.8887 -7.5680 0.6108 34 1 2.6451 -9.2379 1.1155 35 1 0.6029 -4.9450 -0.6177 36 1 1.2694 -5.2474 1.0161 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966619916.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:18 Heat of formation + Delta-G solvation = -10.240395 kcal Electronic energy + Delta-G solvation = -16801.335763 eV Core-core repulsion = 14092.981927 eV Total energy + Delta-G solvation = -2708.353836 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.83538 -37.63693 -35.33303 -34.39631 -31.64770 -29.54259 -28.64348 -27.84626 -26.73996 -23.88223 -22.65500 -20.64806 -19.85070 -18.04552 -17.41505 -17.04235 -15.86432 -15.05431 -14.73248 -14.46228 -14.11729 -13.73235 -13.62528 -13.22861 -13.12961 -12.74728 -12.55180 -12.23983 -12.03133 -11.85382 -11.67134 -11.33213 -11.09198 -10.70069 -10.64534 -10.28976 -10.02610 -9.42154 -9.22491 -9.21970 -9.00021 -8.26191 -7.14044 -6.16159 -3.18099 1.37932 3.29906 3.45991 3.51844 3.56209 3.69897 4.55409 4.63930 4.72073 4.89184 5.04073 5.17264 5.21320 5.27036 5.36182 5.49827 5.56374 5.61371 5.69205 5.72594 5.83631 5.88674 5.98700 6.03881 6.18006 6.32015 6.39782 6.44488 6.52089 6.66749 6.83714 7.77193 7.84713 8.44813 8.69906 9.13728 10.00267 10.13222 11.31913 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.044846 B = 0.004760 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.203200 B = 5881.037922 C = 6331.838322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.042 4.042 3 C -0.124 4.124 4 C -0.227 4.227 5 C 0.553 3.447 6 O -0.547 6.547 7 N -0.613 5.613 8 C 0.107 3.893 9 C -0.142 4.142 10 C 0.177 3.823 11 H 0.065 0.935 12 N -0.724 5.724 13 C -0.339 4.339 14 H 0.067 0.933 15 C -0.041 4.041 16 N -0.941 5.941 17 Si 1.083 2.917 18 H -0.294 1.294 19 H -0.294 1.294 20 H -0.287 1.287 21 C 0.085 3.915 22 H 0.082 0.918 23 H 0.049 0.951 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.123 0.877 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.370 0.630 34 H 0.255 0.745 35 H 0.071 0.929 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.107 19.442 -1.320 19.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.044 4.044 3 C -0.181 4.181 4 C -0.248 4.248 5 C 0.345 3.655 6 O -0.427 6.427 7 N -0.346 5.346 8 C -0.016 4.016 9 C -0.180 4.180 10 C 0.065 3.935 11 H 0.083 0.917 12 N -0.366 5.366 13 C -0.469 4.469 14 H 0.085 0.915 15 C -0.238 4.238 16 N -0.586 5.586 17 Si 0.914 3.086 18 H -0.222 1.222 19 H -0.220 1.220 20 H -0.213 1.213 21 C -0.041 4.041 22 H 0.101 0.899 23 H 0.068 0.932 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.141 0.859 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.204 0.796 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.694 17.964 -1.571 18.233 hybrid contribution 0.930 1.486 0.348 1.787 sum 3.624 19.450 -1.223 19.823 Atomic orbital electron populations 1.21030 0.90811 1.00727 1.04539 1.22551 0.96954 0.94360 0.90553 1.20991 0.99981 0.94352 1.02748 1.22427 0.99938 0.91984 1.10438 1.18219 0.86929 0.83319 0.77017 1.90764 1.13603 1.87199 1.51175 1.48435 1.07382 1.06357 1.72464 1.21963 0.81053 0.97705 1.00923 1.22913 0.99659 0.93063 1.02404 1.21244 0.90418 0.84861 0.97012 0.91744 1.42311 1.53441 1.06186 1.34629 1.20097 1.21287 0.94730 1.10807 0.91471 1.25817 1.02663 0.95915 0.99446 1.70866 1.30003 1.38029 1.19699 0.83194 0.75196 0.75910 0.74339 1.22168 1.22034 1.21328 1.23305 0.99070 0.80072 1.01632 0.89949 0.93189 0.89963 0.90466 0.91080 0.91262 0.85924 0.91750 0.91903 0.90656 0.90180 0.79622 0.93329 0.91095 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 8.33 36.01 0.30 -1.08 16 2 C -0.04 -0.47 6.11 -101.17 -0.62 -1.09 16 3 C -0.12 -0.92 9.98 36.00 0.36 -0.56 16 4 C -0.23 -2.87 9.14 -37.80 -0.35 -3.22 16 5 C 0.55 9.33 7.76 -12.67 -0.10 9.23 16 6 O -0.55 -10.84 13.33 5.26 0.07 -10.77 16 7 N -0.61 -10.26 3.33 -171.92 -0.57 -10.83 16 8 C 0.11 1.42 6.06 -3.07 -0.02 1.40 16 9 C -0.14 -2.15 6.58 -24.90 -0.16 -2.32 16 10 C 0.18 3.51 3.68 -65.79 -0.24 3.27 16 11 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 12 N -0.72 -17.85 5.27 -51.36 -0.27 -18.12 16 13 C -0.34 -9.46 9.98 -15.06 -0.15 -9.61 16 14 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 15 C -0.04 -1.17 5.50 -17.43 -0.10 -1.27 16 16 N -0.94 -28.84 13.70 55.49 0.76 -28.08 16 17 Si 1.08 25.99 29.92 -169.99 -5.09 20.91 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 C 0.08 1.68 6.60 -2.54 -0.02 1.66 16 22 H 0.08 1.14 7.22 -51.93 -0.37 0.77 16 23 H 0.05 0.46 7.94 -51.93 -0.41 0.05 16 24 H 0.08 1.14 7.22 -51.93 -0.37 0.76 16 25 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.45 8.05 -51.93 -0.42 0.03 16 27 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 28 H 0.12 1.26 7.38 -52.49 -0.39 0.87 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 31 H 0.07 1.15 8.00 -51.93 -0.42 0.74 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.37 9.28 6.54 -40.82 -0.27 9.02 16 34 H 0.26 7.66 6.77 -40.82 -0.28 7.38 16 35 H 0.07 1.54 8.04 -51.93 -0.42 1.12 16 36 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 298.50 15.07 4.50 4.50 Total: -1.00 -32.67 298.50 -7.20 -39.87 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -5.50 Total: 6.12 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -1.09 Total: -3.58 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.08 Total: -57.04 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.07 Total: -10.77 kcal Atomic # 14 Polarization: 25.99 SS G_CDS: -5.09 Total: 20.91 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.67 -7.20 -39.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966619916.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.626 kcal (2) G-P(sol) polarization free energy of solvation -32.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds