Wall clock time and date at job start Sun Mar 29 2020 22:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50693 * 120.00148 * 2 1 4 4 C 1.32999 * 119.99965 * 180.02562 * 2 1 3 5 5 C 1.47102 * 119.99961 * 359.97438 * 4 2 1 6 6 O 1.21616 * 120.00029 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99941 * 179.97438 * 5 4 2 8 8 C 1.47018 * 125.65075 * 0.04399 * 7 5 4 9 9 C 1.54317 * 107.27559 * 181.02260 * 8 7 5 10 10 C 1.55160 * 102.94328 * 22.19141 * 9 8 7 11 11 H 1.09003 * 111.03421 * 82.58301 * 10 9 8 12 12 N 1.46490 * 111.00678 * 206.42332 * 10 9 8 13 13 C 1.36935 * 120.00121 * 198.64617 * 12 10 9 14 14 H 1.07997 * 120.00139 * 0.02562 * 13 12 10 15 15 C 1.38816 * 120.00401 * 180.02562 * 13 12 10 16 16 N 1.31624 * 119.99569 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00172 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.46685 * 269.99637 * 17 15 13 19 19 H 1.48494 * 109.47357 * 29.99716 * 17 15 13 20 20 H 1.48502 * 109.47120 * 150.00435 * 17 15 13 21 21 C 1.47429 * 125.64735 * 180.02562 * 7 5 4 22 22 H 1.09007 * 109.46660 * 239.99690 * 1 2 3 23 23 H 1.08997 * 109.46853 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47177 * 120.00170 * 1 2 3 25 25 H 1.08997 * 109.47571 * 270.00437 * 3 2 1 26 26 H 1.09006 * 109.47121 * 30.00222 * 3 2 1 27 27 H 1.09001 * 109.47458 * 150.00084 * 3 2 1 28 28 H 1.07996 * 120.00128 * 179.97438 * 4 2 1 29 29 H 1.09003 * 109.87961 * 300.44252 * 8 7 5 30 30 H 1.09007 * 109.88087 * 61.44833 * 8 7 5 31 31 H 1.09002 * 110.72264 * 263.82858 * 9 8 7 32 32 H 1.09000 * 110.72562 * 140.55869 * 9 8 7 33 33 H 0.97000 * 120.00577 * 18.65217 * 12 10 9 34 34 H 0.97001 * 119.99885 * 359.97438 * 16 15 13 35 35 H 1.08995 * 110.36765 * 37.06360 * 21 7 5 36 36 H 1.09005 * 110.36395 * 274.74563 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1720 -1.1518 -0.0005 5 6 1.4365 -2.4257 -0.0005 6 8 0.2203 -2.4257 -0.0005 7 7 2.1104 -3.5929 -0.0016 8 6 3.5734 -3.7377 -0.0018 9 6 3.8844 -5.2489 -0.0294 10 6 2.5839 -5.8607 -0.6142 11 1 2.5783 -5.8008 -1.7026 12 7 2.4068 -7.2442 -0.1664 13 6 1.5609 -8.0805 -0.8447 14 1 1.0246 -7.7203 -1.7101 15 6 1.3927 -9.3914 -0.4200 16 7 2.0459 -9.8303 0.6350 17 14 0.2392 -10.5324 -1.3459 18 1 -1.1252 -10.4322 -0.7681 19 1 0.2003 -10.1415 -2.7779 20 1 0.7255 -11.9305 -1.2273 21 6 1.5024 -4.9360 -0.0022 22 1 -0.3633 -0.5139 0.8900 23 1 -0.3633 1.0277 0.0005 24 1 -0.3633 -0.5139 -0.8900 25 1 2.4422 1.6198 -1.0276 26 1 1.6715 2.0647 0.5139 27 1 3.2130 1.1747 0.5138 28 1 3.2520 -1.1518 -0.0009 29 1 3.9933 -3.2566 -0.8852 30 1 3.9906 -3.2874 0.8989 31 1 4.0678 -5.6234 0.9777 32 1 4.7343 -5.4561 -0.6796 33 1 2.8887 -7.5680 0.6108 34 1 2.6451 -9.2379 1.1155 35 1 0.6029 -4.9450 -0.6177 36 1 1.2694 -5.2474 1.0161 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966619916.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:17 Heat of formation + Delta-G solvation = -32.086935 kcal Electronic energy + Delta-G solvation = -16802.283101 eV Core-core repulsion = 14092.981927 eV Total energy + Delta-G solvation = -2709.301174 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.15054 -39.03201 -36.45854 -36.14539 -33.41977 -31.09786 -29.89161 -28.64765 -28.10802 -25.78858 -24.13704 -22.04735 -21.17574 -19.60833 -19.03395 -18.26774 -17.30228 -16.60268 -16.19704 -15.82337 -15.56436 -15.20805 -14.72454 -14.62785 -14.40447 -13.97405 -13.75423 -13.27684 -13.21332 -13.02922 -12.78709 -12.69335 -12.50118 -12.36882 -12.33951 -11.88532 -11.80427 -11.29814 -11.04245 -10.67685 -10.19989 -9.60011 -9.20816 -8.44461 -5.40405 0.38227 1.57166 1.66935 1.81678 2.00638 2.25843 2.67923 3.31900 3.52072 3.54401 3.83963 3.90986 3.97349 4.13997 4.25159 4.27703 4.42286 4.55899 4.63844 4.68108 4.76108 4.79175 4.89281 4.91665 4.98327 5.07804 5.15523 5.21373 5.29539 5.50736 5.56024 5.65768 6.45933 6.58271 7.02292 7.15698 7.91767 8.01560 9.07398 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.044846 B = 0.004760 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.203200 B = 5881.037922 C = 6331.838322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.026 4.026 3 C -0.120 4.120 4 C -0.243 4.243 5 C 0.541 3.459 6 O -0.592 6.592 7 N -0.616 5.616 8 C 0.110 3.890 9 C -0.129 4.129 10 C 0.169 3.831 11 H 0.058 0.942 12 N -0.736 5.736 13 C -0.339 4.339 14 H 0.063 0.937 15 C -0.097 4.097 16 N -0.971 5.971 17 Si 1.128 2.872 18 H -0.288 1.288 19 H -0.273 1.273 20 H -0.289 1.289 21 C 0.096 3.904 22 H 0.058 0.942 23 H 0.080 0.920 24 H 0.058 0.942 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.156 0.844 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.365 0.635 34 H 0.247 0.753 35 H 0.039 0.961 36 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.703 21.902 -1.930 22.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.028 4.028 3 C -0.176 4.176 4 C -0.263 4.263 5 C 0.336 3.664 6 O -0.475 6.475 7 N -0.349 5.349 8 C -0.012 4.012 9 C -0.167 4.167 10 C 0.059 3.941 11 H 0.076 0.924 12 N -0.377 5.377 13 C -0.470 4.470 14 H 0.081 0.919 15 C -0.289 4.289 16 N -0.619 5.619 17 Si 0.953 3.047 18 H -0.215 1.215 19 H -0.198 1.198 20 H -0.215 1.215 21 C -0.031 4.031 22 H 0.076 0.924 23 H 0.098 0.902 24 H 0.077 0.923 25 H 0.112 0.888 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.174 0.826 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.121 0.879 33 H 0.198 0.802 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.330 20.489 -2.194 21.056 hybrid contribution 0.379 0.853 0.536 1.076 sum 4.709 21.342 -1.659 21.918 Atomic orbital electron populations 1.20998 0.92209 1.01895 1.02273 1.22951 0.96358 0.95926 0.87574 1.21077 1.00328 0.92042 1.04200 1.22433 1.01190 0.89798 1.12893 1.19107 0.86804 0.84561 0.75977 1.90746 1.15725 1.87860 1.53178 1.48506 1.08911 1.04953 1.72536 1.22196 0.78725 0.96399 1.03919 1.22858 0.97525 0.94022 1.02345 1.21394 0.93198 0.82781 0.96750 0.92392 1.42435 1.53032 1.07851 1.34409 1.20386 1.20965 0.95270 1.10424 0.91864 1.27168 1.03943 0.97915 0.99834 1.70966 1.31501 1.38246 1.21141 0.82620 0.73622 0.74067 0.74430 1.21488 1.19830 1.21485 1.22830 0.98179 0.82591 0.99475 0.92356 0.90151 0.92338 0.88769 0.89665 0.89568 0.82649 0.88641 0.88906 0.90794 0.87940 0.80159 0.94285 0.94208 0.94088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.74 8.33 71.24 0.59 -2.15 16 2 C -0.03 -0.51 6.11 -17.62 -0.11 -0.62 16 3 C -0.12 -1.23 9.98 71.23 0.71 -0.52 16 4 C -0.24 -5.51 9.14 23.43 0.21 -5.30 16 5 C 0.54 18.08 7.76 86.57 0.67 18.75 16 6 O -0.59 -24.39 13.33 -4.08 -0.05 -24.44 16 7 N -0.62 -20.23 3.33 -816.09 -2.71 -22.94 16 8 C 0.11 2.56 6.06 86.73 0.53 3.08 16 9 C -0.13 -3.67 6.58 31.78 0.21 -3.46 16 10 C 0.17 6.77 3.68 46.38 0.17 6.94 16 11 H 0.06 2.39 8.13 -2.39 -0.02 2.38 16 12 N -0.74 -37.08 5.27 -316.41 -1.67 -38.75 16 13 C -0.34 -19.33 9.98 84.03 0.84 -18.49 16 14 H 0.06 3.58 7.83 -2.91 -0.02 3.56 16 15 C -0.10 -5.66 5.50 84.86 0.47 -5.19 16 16 N -0.97 -60.69 13.70 21.65 0.30 -60.39 16 17 Si 1.13 52.78 29.92 68.60 2.05 54.83 16 18 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 20 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 21 C 0.10 3.94 6.60 86.85 0.57 4.51 16 22 H 0.06 1.65 7.22 -2.38 -0.02 1.64 16 23 H 0.08 1.33 7.94 -2.39 -0.02 1.31 16 24 H 0.06 1.65 7.22 -2.39 -0.02 1.64 16 25 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.08 0.68 8.05 -2.38 -0.02 0.66 16 27 H 0.09 0.66 8.07 -2.39 -0.02 0.64 16 28 H 0.16 2.45 7.38 -2.91 -0.02 2.43 16 29 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.07 2.15 8.00 -2.39 -0.02 2.13 16 32 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.37 18.84 6.54 -92.71 -0.61 18.23 16 34 H 0.25 15.23 6.77 -92.71 -0.63 14.60 16 35 H 0.04 1.83 8.04 -2.39 -0.02 1.81 16 36 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -74.25 298.50 3.37 -70.88 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: 0.60 Total: 23.25 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 4.87 Total: -2.43 kcal Atomic # 7 Polarization: -118.00 SS G_CDS: -4.09 Total: -122.08 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.05 Total: -24.44 kcal Atomic # 14 Polarization: 52.78 SS G_CDS: 2.05 Total: 54.83 kcal Total: -74.25 3.37 -70.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966619916.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.792 kcal (2) G-P(sol) polarization free energy of solvation -74.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds