Wall clock time and date at job start Sun Mar 29 2020 22:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32989 * 119.99974 * 2 1 4 4 C 1.50703 * 119.99974 * 180.02562 * 3 2 1 5 5 C 1.47099 * 120.00248 * 359.97438 * 3 2 1 6 6 O 1.21615 * 120.00209 * 263.59065 * 5 3 2 7 7 N 1.34774 * 120.00185 * 83.31046 * 5 3 2 8 8 C 1.47020 * 125.64794 * 355.70597 * 7 5 3 9 9 C 1.54319 * 107.27392 * 181.02363 * 8 7 5 10 10 C 1.55157 * 102.94524 * 22.19139 * 9 8 7 11 11 H 1.09005 * 111.00487 * 82.61059 * 10 9 8 12 12 N 1.46500 * 111.00887 * 206.42795 * 10 9 8 13 13 C 1.36940 * 119.99888 * 205.00228 * 12 10 9 14 14 H 1.08001 * 120.00093 * 359.97438 * 13 12 10 15 15 C 1.38804 * 119.99674 * 179.97438 * 13 12 10 16 16 N 1.31621 * 120.00269 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00019 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46993 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47304 * 120.00015 * 17 15 13 20 20 H 1.48504 * 109.47450 * 240.00182 * 17 15 13 21 21 C 1.47431 * 125.65140 * 175.39910 * 7 5 3 22 22 H 1.08998 * 109.47078 * 300.00395 * 1 2 3 23 23 H 1.09006 * 109.46851 * 60.00155 * 1 2 3 24 24 H 1.09002 * 109.47194 * 179.97438 * 1 2 3 25 25 H 1.07995 * 119.99746 * 179.97438 * 2 1 3 26 26 H 1.08996 * 109.46688 * 275.02084 * 4 3 2 27 27 H 1.08996 * 109.46887 * 35.01831 * 4 3 2 28 28 H 1.09002 * 109.47067 * 155.01909 * 4 3 2 29 29 H 1.09003 * 109.88173 * 300.43756 * 8 7 5 30 30 H 1.08999 * 109.88346 * 61.45019 * 8 7 5 31 31 H 1.09006 * 110.72260 * 140.55594 * 9 8 7 32 32 H 1.09005 * 110.72357 * 263.82810 * 9 8 7 33 33 H 0.96999 * 119.99779 * 24.99685 * 12 10 9 34 34 H 0.97008 * 120.00336 * 180.02562 * 16 15 13 35 35 H 1.08999 * 110.36061 * 274.74462 * 21 7 5 36 36 H 1.08995 * 110.36440 * 37.06879 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6790 1.1517 -0.0006 5 6 1.4365 2.4257 -0.0006 6 8 1.2347 3.0109 -1.0474 7 7 0.9814 2.9416 1.1583 8 6 1.0706 2.2971 2.4767 9 6 0.3987 3.2420 3.4951 10 6 -0.5326 4.1067 2.6050 11 1 -1.4713 3.5902 2.4043 12 7 -0.7770 5.4153 3.2165 13 6 -1.9135 6.1140 2.9075 14 1 -2.6295 5.7004 2.2127 15 6 -2.1452 7.3537 3.4873 16 7 -1.2724 7.8579 4.3336 17 14 -3.6952 8.3071 3.0653 18 1 -4.5070 7.5281 2.0960 19 1 -4.4865 8.5374 4.3006 20 1 -3.3246 9.6135 2.4641 21 6 0.3173 4.2485 1.3151 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 2.0470 -0.9353 0.0004 26 1 4.0426 1.0616 1.0230 27 1 4.0421 0.3102 -0.5906 28 1 4.0422 2.0834 -0.4345 29 1 0.5482 1.3406 2.4579 30 1 2.1160 2.1431 2.7441 31 1 -0.1813 2.6748 4.2232 32 1 1.1425 3.8639 3.9933 33 1 -0.1338 5.7869 3.8403 34 1 -1.4345 8.7241 4.7391 35 1 1.0586 5.0390 1.4314 36 1 -0.3251 4.4526 0.4585 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968363041.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:00 Heat of formation + Delta-G solvation = -11.608864 kcal Electronic energy + Delta-G solvation = -17105.076754 eV Core-core repulsion = 14396.663576 eV Total energy + Delta-G solvation = -2708.413178 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.91336 -37.34912 -35.27161 -34.06304 -31.46059 -30.32367 -29.59017 -27.67125 -25.12005 -24.05454 -22.82707 -21.28213 -20.07068 -18.14729 -17.22958 -16.32386 -16.06127 -15.17551 -14.84519 -14.29668 -13.86363 -13.71166 -13.34558 -13.22567 -12.95844 -12.85459 -12.57896 -12.28235 -12.09600 -11.82048 -11.62103 -11.46167 -11.10358 -10.84666 -10.75123 -10.29301 -10.04490 -9.82420 -9.63482 -9.03403 -8.99447 -8.32794 -7.08955 -5.85162 -3.15862 1.72946 2.79913 3.32116 3.40718 3.47206 3.48872 4.52173 4.57703 4.79615 4.97097 5.06783 5.21743 5.29308 5.33334 5.41713 5.49793 5.56984 5.61580 5.71331 5.77853 5.81430 5.90035 5.95992 6.12679 6.25528 6.30602 6.37253 6.51059 6.54949 6.63604 6.86785 7.65248 7.79821 8.32058 8.37257 9.44604 9.97563 10.32513 11.36973 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.040622 B = 0.005253 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.112469 B = 5328.678432 C = 5437.802314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.121 4.121 3 C -0.162 4.162 4 C -0.103 4.103 5 C 0.567 3.433 6 O -0.544 6.544 7 N -0.608 5.608 8 C 0.106 3.894 9 C -0.142 4.142 10 C 0.173 3.827 11 H 0.068 0.932 12 N -0.711 5.711 13 C -0.248 4.248 14 H 0.073 0.927 15 C -0.008 4.008 16 N -0.930 5.930 17 Si 0.908 3.092 18 H -0.279 1.279 19 H -0.291 1.291 20 H -0.290 1.290 21 C 0.079 3.921 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.122 0.878 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.387 0.613 34 H 0.256 0.744 35 H 0.067 0.933 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.178 -16.320 -3.556 18.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.140 4.140 3 C -0.165 4.165 4 C -0.160 4.160 5 C 0.355 3.645 6 O -0.423 6.423 7 N -0.342 5.342 8 C -0.017 4.017 9 C -0.181 4.181 10 C 0.060 3.940 11 H 0.086 0.914 12 N -0.351 5.351 13 C -0.379 4.379 14 H 0.091 0.909 15 C -0.205 4.205 16 N -0.578 5.578 17 Si 0.739 3.261 18 H -0.204 1.204 19 H -0.218 1.218 20 H -0.217 1.217 21 C -0.046 4.046 22 H 0.091 0.909 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.140 0.860 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.221 0.779 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.902 -15.927 -4.212 17.862 hybrid contribution -0.484 0.710 0.011 0.859 sum 6.419 -15.218 -4.202 17.042 Atomic orbital electron populations 1.21006 0.92702 1.02649 1.03007 1.23244 0.96343 0.96598 0.97818 1.21512 0.96869 0.93135 1.04949 1.20640 0.89945 1.03094 1.02288 1.18138 0.78696 0.84904 0.82716 1.90804 1.58545 1.62067 1.30835 1.48572 1.58135 1.20729 1.06727 1.22004 1.00421 0.96502 0.82786 1.22959 0.99677 0.98112 0.97372 1.21353 0.94903 0.87941 0.89781 0.91424 1.42318 1.24614 1.16371 1.51772 1.19321 0.97696 0.99203 1.21661 0.90867 1.24764 0.98643 0.97745 0.99337 1.69671 1.35962 1.19171 1.32985 0.86103 0.82525 0.79940 0.77520 1.20416 1.21757 1.21723 1.23484 0.96362 0.83057 1.01692 0.90934 0.91108 0.91549 0.85985 0.91013 0.91149 0.91526 0.91749 0.91942 0.90217 0.90474 0.77864 0.93383 0.91479 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.16 36.01 0.33 -1.14 16 2 C -0.12 -1.27 9.97 -36.13 -0.36 -1.63 16 3 C -0.16 -2.04 4.93 -102.85 -0.51 -2.55 16 4 C -0.10 -1.03 10.02 36.01 0.36 -0.67 16 5 C 0.57 9.55 6.05 -12.67 -0.08 9.47 16 6 O -0.54 -11.45 17.34 5.26 0.09 -11.36 16 7 N -0.61 -9.86 3.32 -171.77 -0.57 -10.43 16 8 C 0.11 1.38 6.42 -3.07 -0.02 1.36 16 9 C -0.14 -2.11 6.59 -24.90 -0.16 -2.28 16 10 C 0.17 3.31 3.73 -65.66 -0.24 3.07 16 11 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 12 N -0.71 -17.19 5.24 -51.23 -0.27 -17.46 16 13 C -0.25 -6.73 9.96 -15.06 -0.15 -6.88 16 14 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 15 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 16 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 17 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 C 0.08 1.52 6.63 -2.41 -0.02 1.50 16 22 H 0.07 0.82 6.52 -51.93 -0.34 0.49 16 23 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 28 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 29 H 0.06 0.73 6.63 -51.93 -0.34 0.38 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.08 1.17 8.00 -51.93 -0.42 0.76 16 33 H 0.39 9.86 7.76 -40.82 -0.32 9.54 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.07 1.50 7.99 -51.93 -0.42 1.08 16 LS Contribution 302.99 15.07 4.57 4.57 Total: -1.00 -31.72 302.99 -7.02 -38.74 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.59 Total: 5.69 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -0.94 Total: -0.08 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -0.12 Total: -54.68 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.72 -7.02 -38.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968363041.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.133 kcal (2) G-P(sol) polarization free energy of solvation -31.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds