Wall clock time and date at job start Sun Mar 29 2020 22:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32989 * 119.99974 * 2 1 4 4 C 1.50703 * 119.99974 * 180.02562 * 3 2 1 5 5 C 1.47099 * 120.00248 * 359.97438 * 3 2 1 6 6 O 1.21615 * 120.00209 * 263.59065 * 5 3 2 7 7 N 1.34774 * 120.00185 * 83.31046 * 5 3 2 8 8 C 1.47020 * 125.64794 * 355.70597 * 7 5 3 9 9 C 1.54319 * 107.27392 * 181.02363 * 8 7 5 10 10 C 1.55157 * 102.94524 * 22.19139 * 9 8 7 11 11 H 1.09005 * 111.00487 * 82.61059 * 10 9 8 12 12 N 1.46500 * 111.00887 * 206.42795 * 10 9 8 13 13 C 1.36940 * 119.99888 * 205.00228 * 12 10 9 14 14 H 1.08001 * 120.00093 * 359.97438 * 13 12 10 15 15 C 1.38804 * 119.99674 * 179.97438 * 13 12 10 16 16 N 1.31621 * 120.00269 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00019 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46993 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47304 * 120.00015 * 17 15 13 20 20 H 1.48504 * 109.47450 * 240.00182 * 17 15 13 21 21 C 1.47431 * 125.65140 * 175.39910 * 7 5 3 22 22 H 1.08998 * 109.47078 * 300.00395 * 1 2 3 23 23 H 1.09006 * 109.46851 * 60.00155 * 1 2 3 24 24 H 1.09002 * 109.47194 * 179.97438 * 1 2 3 25 25 H 1.07995 * 119.99746 * 179.97438 * 2 1 3 26 26 H 1.08996 * 109.46688 * 275.02084 * 4 3 2 27 27 H 1.08996 * 109.46887 * 35.01831 * 4 3 2 28 28 H 1.09002 * 109.47067 * 155.01909 * 4 3 2 29 29 H 1.09003 * 109.88173 * 300.43756 * 8 7 5 30 30 H 1.08999 * 109.88346 * 61.45019 * 8 7 5 31 31 H 1.09006 * 110.72260 * 140.55594 * 9 8 7 32 32 H 1.09005 * 110.72357 * 263.82810 * 9 8 7 33 33 H 0.96999 * 119.99779 * 24.99685 * 12 10 9 34 34 H 0.97008 * 120.00336 * 180.02562 * 16 15 13 35 35 H 1.08999 * 110.36061 * 274.74462 * 21 7 5 36 36 H 1.08995 * 110.36440 * 37.06879 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6790 1.1517 -0.0006 5 6 1.4365 2.4257 -0.0006 6 8 1.2347 3.0109 -1.0474 7 7 0.9814 2.9416 1.1583 8 6 1.0706 2.2971 2.4767 9 6 0.3987 3.2420 3.4951 10 6 -0.5326 4.1067 2.6050 11 1 -1.4713 3.5902 2.4043 12 7 -0.7770 5.4153 3.2165 13 6 -1.9135 6.1140 2.9075 14 1 -2.6295 5.7004 2.2127 15 6 -2.1452 7.3537 3.4873 16 7 -1.2724 7.8579 4.3336 17 14 -3.6952 8.3071 3.0653 18 1 -4.5070 7.5281 2.0960 19 1 -4.4865 8.5374 4.3006 20 1 -3.3246 9.6135 2.4641 21 6 0.3173 4.2485 1.3151 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 2.0470 -0.9353 0.0004 26 1 4.0426 1.0616 1.0230 27 1 4.0421 0.3102 -0.5906 28 1 4.0422 2.0834 -0.4345 29 1 0.5482 1.3406 2.4579 30 1 2.1160 2.1431 2.7441 31 1 -0.1813 2.6748 4.2232 32 1 1.1425 3.8639 3.9933 33 1 -0.1338 5.7869 3.8403 34 1 -1.4345 8.7241 4.7391 35 1 1.0586 5.0390 1.4314 36 1 -0.3251 4.4526 0.4585 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968363041.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:59 Heat of formation + Delta-G solvation = -32.898066 kcal Electronic energy + Delta-G solvation = -17105.999923 eV Core-core repulsion = 14396.663576 eV Total energy + Delta-G solvation = -2709.336347 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.22703 -38.78237 -36.34369 -35.85397 -33.26783 -31.23053 -31.00057 -29.24910 -26.41690 -25.45626 -24.28519 -22.43753 -21.61983 -19.59508 -19.02141 -17.60351 -17.43701 -16.49538 -16.27542 -15.75765 -15.40756 -14.84785 -14.81123 -14.51265 -14.30635 -13.91321 -13.75528 -13.59093 -13.30901 -13.10077 -12.91969 -12.74012 -12.48638 -12.44994 -12.36545 -12.08609 -11.79869 -11.62320 -11.08374 -10.92674 -9.88394 -9.71907 -9.09724 -7.99689 -5.29770 0.83993 1.46185 1.47523 1.50976 1.56969 2.05250 2.53862 3.30958 3.52120 3.64213 3.92792 3.95655 4.09686 4.21353 4.33074 4.36558 4.52330 4.54553 4.60961 4.70683 4.80375 4.81215 4.86312 4.97258 5.01481 5.14981 5.17255 5.21198 5.33098 5.48297 5.52333 5.67310 6.22368 6.51671 7.05268 7.29689 8.00493 8.25035 9.23279 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.040622 B = 0.005253 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.112469 B = 5328.678432 C = 5437.802314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 C -0.186 4.186 4 C -0.098 4.098 5 C 0.562 3.438 6 O -0.600 6.600 7 N -0.607 5.607 8 C 0.110 3.890 9 C -0.130 4.130 10 C 0.167 3.833 11 H 0.066 0.934 12 N -0.723 5.723 13 C -0.249 4.249 14 H 0.074 0.926 15 C -0.067 4.067 16 N -0.965 5.965 17 Si 0.970 3.030 18 H -0.269 1.269 19 H -0.289 1.289 20 H -0.295 1.295 21 C 0.089 3.911 22 H 0.065 0.935 23 H 0.045 0.955 24 H 0.095 0.905 25 H 0.163 0.837 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.044 0.956 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.378 0.622 34 H 0.253 0.747 35 H 0.047 0.953 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.651 -19.243 -3.129 20.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 C -0.189 4.189 4 C -0.154 4.154 5 C 0.353 3.647 6 O -0.482 6.482 7 N -0.339 5.339 8 C -0.012 4.012 9 C -0.168 4.168 10 C 0.057 3.943 11 H 0.084 0.916 12 N -0.361 5.361 13 C -0.380 4.380 14 H 0.092 0.908 15 C -0.260 4.260 16 N -0.615 5.615 17 Si 0.799 3.201 18 H -0.193 1.193 19 H -0.216 1.216 20 H -0.222 1.222 21 C -0.038 4.038 22 H 0.084 0.916 23 H 0.063 0.937 24 H 0.114 0.886 25 H 0.181 0.819 26 H 0.109 0.891 27 H 0.113 0.887 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.211 0.789 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.382 -18.914 -3.781 20.653 hybrid contribution -0.645 1.536 -0.172 1.675 sum 6.737 -17.378 -3.953 19.053 Atomic orbital electron populations 1.21078 0.93303 1.04102 1.01439 1.23602 0.96054 0.97260 0.94377 1.21500 0.98000 0.91193 1.08212 1.20675 0.87894 1.03051 1.03821 1.19001 0.77971 0.86020 0.81723 1.90766 1.60566 1.64040 1.32793 1.48637 1.57458 1.19572 1.08258 1.22203 1.02352 0.96522 0.80123 1.22883 0.98784 0.97682 0.97463 1.21499 0.95792 0.86563 0.90491 0.91636 1.42434 1.23714 1.18002 1.51980 1.19649 0.98308 0.99409 1.20674 0.90805 1.25512 1.01612 0.98908 0.99951 1.69803 1.37772 1.19431 1.34483 0.85132 0.79363 0.78276 0.77319 1.19306 1.21554 1.22215 1.23053 0.95644 0.84600 1.00489 0.91588 0.93654 0.88593 0.81934 0.89096 0.88677 0.93651 0.89027 0.89160 0.88021 0.90714 0.78891 0.93817 0.93448 0.93972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.16 71.24 0.65 -2.01 16 2 C -0.09 -1.61 9.97 24.52 0.24 -1.36 16 3 C -0.19 -4.24 4.93 -18.70 -0.09 -4.33 16 4 C -0.10 -1.66 10.02 71.24 0.71 -0.95 16 5 C 0.56 18.79 6.05 86.57 0.52 19.31 16 6 O -0.60 -26.18 17.34 -4.08 -0.07 -26.25 16 7 N -0.61 -19.34 3.32 -815.62 -2.71 -22.06 16 8 C 0.11 2.54 6.42 86.73 0.56 3.09 16 9 C -0.13 -3.59 6.59 31.78 0.21 -3.38 16 10 C 0.17 6.42 3.73 46.46 0.17 6.60 16 11 H 0.07 2.54 8.09 -2.38 -0.02 2.52 16 12 N -0.72 -35.52 5.24 -316.01 -1.66 -37.17 16 13 C -0.25 -13.70 9.96 84.03 0.84 -12.86 16 14 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 15 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 16 N -0.97 -58.15 13.06 21.65 0.28 -57.86 16 17 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 19 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 20 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 21 C 0.09 3.50 6.63 86.93 0.58 4.08 16 22 H 0.07 1.33 6.52 -2.39 -0.02 1.31 16 23 H 0.04 1.10 8.09 -2.38 -0.02 1.08 16 24 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 26 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.09 1.14 8.10 -2.39 -0.02 1.12 16 28 H 0.04 0.96 8.08 -2.39 -0.02 0.94 16 29 H 0.09 1.68 6.63 -2.39 -0.02 1.67 16 30 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.10 2.42 8.14 -2.38 -0.02 2.40 16 32 H 0.07 2.15 8.00 -2.38 -0.02 2.13 16 33 H 0.38 19.70 7.76 -92.71 -0.72 18.98 16 34 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 35 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.04 1.87 7.99 -2.39 -0.02 1.86 16 Total: -1.00 -71.67 302.99 3.07 -68.60 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.34 Total: 21.81 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 4.86 Total: 4.84 kcal Atomic # 7 Polarization: -113.00 SS G_CDS: -4.09 Total: -117.09 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.07 Total: -26.25 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -71.67 3.07 -68.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968363041.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.699 kcal (2) G-P(sol) polarization free energy of solvation -71.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds