Wall clock time and date at job start Sun Mar 29 2020 22:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.47424 * 125.65153 * 359.41933 * 9 7 2 11 11 C 1.55124 * 104.72581 * 155.81877 * 10 9 7 12 12 C 1.55157 * 101.48746 * 37.28923 * 11 10 9 13 13 H 1.09004 * 110.87304 * 205.90118 * 12 11 10 14 14 N 1.46505 * 110.71616 * 82.70244 * 12 11 10 15 15 C 1.34772 * 119.99839 * 160.02709 * 14 12 11 16 16 O 1.21283 * 120.00130 * 359.97438 * 15 14 12 17 17 C 1.50698 * 120.00111 * 179.97438 * 15 14 12 18 18 C 1.53000 * 109.47656 * 179.97438 * 17 15 14 19 19 C 1.52998 * 117.50382 * 243.62601 * 18 17 15 20 20 C 1.52998 * 117.50238 * 174.99873 * 18 17 15 21 21 C 1.47028 * 125.64604 * 179.72243 * 9 7 2 22 22 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 23 23 H 1.09007 * 110.36232 * 274.74242 * 10 9 7 24 24 H 1.09000 * 110.36555 * 37.06453 * 10 9 7 25 25 H 1.09004 * 111.18844 * 279.18730 * 11 10 9 26 26 H 1.08997 * 110.94432 * 155.28923 * 11 10 9 27 27 H 0.97000 * 119.99842 * 340.01694 * 14 12 11 28 28 H 1.08997 * 109.47254 * 300.00249 * 17 15 14 29 29 H 1.09003 * 109.47056 * 59.99837 * 17 15 14 30 30 H 1.09004 * 115.54351 * 29.33464 * 18 17 15 31 31 H 1.08998 * 117.49208 * 359.97438 * 19 18 17 32 32 H 1.08997 * 117.50254 * 145.01585 * 19 18 17 33 33 H 1.08997 * 117.49846 * 214.98035 * 20 18 17 34 34 H 1.08997 * 117.49585 * 0.02562 * 20 18 17 35 35 H 1.08998 * 109.88337 * 300.43606 * 21 9 7 36 36 H 1.08998 * 109.88121 * 61.45190 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 -0.1416 -2.5331 -0.0011 11 6 -0.4022 -3.9290 -0.6255 12 6 0.7782 -4.7522 -0.0455 13 1 1.0247 -5.5903 -0.6975 14 7 0.4665 -5.2238 1.3061 15 6 1.1462 -6.2624 1.8309 16 8 2.0158 -6.8070 1.1842 17 6 0.8260 -6.7471 3.2214 18 6 1.7343 -7.9274 3.5721 19 6 1.0684 -9.2828 3.8175 20 6 1.6452 -8.4899 4.9921 21 6 1.9317 -3.7275 -0.0138 22 1 -0.4850 0.8401 0.0004 23 1 -0.5227 -2.4944 1.0194 24 1 -0.6022 -1.7542 -0.6087 25 1 -0.3532 -3.8892 -1.7138 26 1 -1.3593 -4.3316 -0.2942 27 1 -0.2291 -4.7883 1.8232 28 1 0.9884 -5.9388 3.9344 29 1 -0.2156 -7.0655 3.2643 30 1 2.7127 -7.9265 3.0915 31 1 -0.0168 -9.3336 3.7295 32 1 1.6085 -10.1741 3.4982 33 1 2.5648 -8.8596 5.4455 34 1 0.9392 -8.0195 5.6764 35 1 2.5575 -3.8464 -0.8983 36 1 2.5308 -3.8679 0.8858 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009883469.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:23 Heat of formation + Delta-G solvation = 8.408390 kcal Electronic energy + Delta-G solvation = -16956.093983 eV Core-core repulsion = 14248.548818 eV Total energy + Delta-G solvation = -2707.545164 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.69461 -37.65612 -36.68520 -33.77848 -31.86413 -29.76361 -28.85793 -26.98161 -24.47410 -22.49081 -21.64617 -20.21679 -19.96987 -19.72231 -17.24343 -16.71864 -16.00703 -15.37804 -14.84705 -14.66658 -14.19640 -13.74293 -13.55369 -13.15886 -12.69235 -12.25242 -11.97277 -11.63689 -11.60995 -11.48183 -11.05559 -10.89811 -10.74328 -10.45926 -10.39928 -10.09798 -10.08563 -9.89003 -9.60578 -9.45596 -8.72032 -8.58707 -6.84124 -5.66848 -3.07775 2.92705 3.39170 3.43712 3.45485 3.47743 3.77159 4.48943 4.61834 4.76886 4.83987 5.08522 5.33254 5.39160 5.44855 5.48791 5.51155 5.56025 5.65747 5.76691 5.79604 5.88271 5.98853 6.23879 6.29207 6.38450 6.49455 6.58824 6.74687 7.08720 7.42279 7.62456 7.80284 7.88240 8.34186 8.54783 9.21494 9.82128 10.46706 11.37290 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.040319 B = 0.004967 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.295974 B = 5635.897458 C = 5881.898449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.151 3.849 11 C -0.153 4.153 12 C 0.131 3.869 13 H 0.086 0.914 14 N -0.712 5.712 15 C 0.514 3.486 16 O -0.547 6.547 17 C -0.112 4.112 18 C -0.136 4.136 19 C -0.180 4.180 20 C -0.183 4.183 21 C 0.128 3.872 22 H 0.251 0.749 23 H 0.010 0.990 24 H 0.109 0.891 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.400 0.600 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.118 0.882 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.030 0.970 36 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.283 -13.562 6.436 15.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.026 3.974 11 C -0.192 4.192 12 C 0.026 3.974 13 H 0.104 0.896 14 N -0.363 5.363 15 C 0.300 3.700 16 O -0.424 6.424 17 C -0.151 4.151 18 C -0.155 4.155 19 C -0.217 4.217 20 C -0.220 4.220 21 C 0.001 3.999 22 H 0.062 0.938 23 H 0.028 0.972 24 H 0.127 0.873 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.234 0.766 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.136 0.864 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.048 0.952 36 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -1.680 -13.720 5.955 15.051 hybrid contribution 0.111 1.098 0.375 1.166 sum -1.568 -12.622 6.330 14.207 Atomic orbital electron populations 1.69782 1.04871 1.24600 1.58079 1.24768 0.95740 0.97676 1.02568 0.85990 0.78706 0.83560 0.77225 1.20536 1.21726 1.21796 1.19156 0.90603 0.82463 1.42529 0.90467 1.44532 1.01841 0.99796 1.86844 1.22011 0.84955 0.92584 0.97866 1.23366 0.95820 0.99111 1.00904 1.21971 0.96792 0.96130 0.82489 0.89595 1.46020 1.39420 1.33261 1.17596 1.20482 0.81501 0.79649 0.88358 1.90661 1.32002 1.57494 1.62278 1.21224 1.00544 0.98548 0.94831 1.22054 1.01493 0.93268 0.98650 1.23018 1.00270 0.95467 1.02917 1.22993 1.03132 1.04561 0.91279 1.21683 0.93924 0.85882 0.98449 0.93829 0.97177 0.87319 0.90636 0.91791 0.76605 0.88485 0.89057 0.86382 0.88947 0.88901 0.88806 0.88820 0.95193 0.95690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.60 10.08 55.49 0.56 -26.04 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 3 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.22 -6.17 10.27 -15.06 -0.15 -6.33 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.72 16 9 N -0.60 -15.52 3.39 -169.93 -0.58 -16.09 16 10 C 0.15 3.53 5.89 -2.41 -0.01 3.51 16 11 C -0.15 -2.78 6.65 -24.47 -0.16 -2.94 16 12 C 0.13 2.39 3.25 -66.09 -0.21 2.18 16 13 H 0.09 1.56 7.69 -51.93 -0.40 1.16 16 14 N -0.71 -11.26 5.11 -52.03 -0.27 -11.53 16 15 C 0.51 8.05 7.83 -10.99 -0.09 7.96 16 16 O -0.55 -10.50 15.29 5.56 0.08 -10.42 16 17 C -0.11 -1.28 5.98 -27.88 -0.17 -1.44 16 18 C -0.14 -1.57 5.41 -90.62 -0.49 -2.06 16 19 C -0.18 -1.74 10.18 -26.73 -0.27 -2.01 16 20 C -0.18 -1.67 10.25 -26.73 -0.27 -1.95 16 21 C 0.13 2.83 6.98 -3.06 -0.02 2.81 16 22 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 23 H 0.01 0.25 8.14 -51.92 -0.42 -0.17 16 24 H 0.11 2.89 5.85 -51.93 -0.30 2.58 16 25 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.40 5.60 8.62 -40.82 -0.35 5.25 16 28 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.09 0.85 7.87 -51.93 -0.41 0.44 16 30 H 0.12 1.61 7.30 -51.93 -0.38 1.23 16 31 H 0.09 0.81 8.03 -51.93 -0.42 0.39 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.03 0.59 8.05 -51.93 -0.42 0.17 16 LS Contribution 297.62 15.07 4.49 4.49 Total: -1.00 -31.53 297.62 -8.30 -39.83 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.61 Total: 3.38 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -1.95 Total: -0.72 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -0.28 Total: -53.66 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.08 Total: -10.42 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.53 -8.30 -39.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009883469.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.238 kcal (2) G-P(sol) polarization free energy of solvation -31.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds