Wall clock time and date at job start Sun Mar 29 2020 22:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.47424 * 125.65153 * 359.41933 * 9 7 2 11 11 C 1.55124 * 104.72581 * 155.81877 * 10 9 7 12 12 C 1.55157 * 101.48746 * 37.28923 * 11 10 9 13 13 H 1.09004 * 110.87304 * 205.90118 * 12 11 10 14 14 N 1.46505 * 110.71616 * 82.70244 * 12 11 10 15 15 C 1.34772 * 119.99839 * 160.02709 * 14 12 11 16 16 O 1.21283 * 120.00130 * 359.97438 * 15 14 12 17 17 C 1.50698 * 120.00111 * 179.97438 * 15 14 12 18 18 C 1.53000 * 109.47656 * 179.97438 * 17 15 14 19 19 C 1.52998 * 117.50382 * 243.62601 * 18 17 15 20 20 C 1.52998 * 117.50238 * 174.99873 * 18 17 15 21 21 C 1.47028 * 125.64604 * 179.72243 * 9 7 2 22 22 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 23 23 H 1.09007 * 110.36232 * 274.74242 * 10 9 7 24 24 H 1.09000 * 110.36555 * 37.06453 * 10 9 7 25 25 H 1.09004 * 111.18844 * 279.18730 * 11 10 9 26 26 H 1.08997 * 110.94432 * 155.28923 * 11 10 9 27 27 H 0.97000 * 119.99842 * 340.01694 * 14 12 11 28 28 H 1.08997 * 109.47254 * 300.00249 * 17 15 14 29 29 H 1.09003 * 109.47056 * 59.99837 * 17 15 14 30 30 H 1.09004 * 115.54351 * 29.33464 * 18 17 15 31 31 H 1.08998 * 117.49208 * 359.97438 * 19 18 17 32 32 H 1.08997 * 117.50254 * 145.01585 * 19 18 17 33 33 H 1.08997 * 117.49846 * 214.98035 * 20 18 17 34 34 H 1.08997 * 117.49585 * 0.02562 * 20 18 17 35 35 H 1.08998 * 109.88337 * 300.43606 * 21 9 7 36 36 H 1.08998 * 109.88121 * 61.45190 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 -0.1416 -2.5331 -0.0011 11 6 -0.4022 -3.9290 -0.6255 12 6 0.7782 -4.7522 -0.0455 13 1 1.0247 -5.5903 -0.6975 14 7 0.4665 -5.2238 1.3061 15 6 1.1462 -6.2624 1.8309 16 8 2.0158 -6.8070 1.1842 17 6 0.8260 -6.7471 3.2214 18 6 1.7343 -7.9274 3.5721 19 6 1.0684 -9.2828 3.8175 20 6 1.6452 -8.4899 4.9921 21 6 1.9317 -3.7275 -0.0138 22 1 -0.4850 0.8401 0.0004 23 1 -0.5227 -2.4944 1.0194 24 1 -0.6022 -1.7542 -0.6087 25 1 -0.3532 -3.8892 -1.7138 26 1 -1.3593 -4.3316 -0.2942 27 1 -0.2291 -4.7883 1.8232 28 1 0.9884 -5.9388 3.9344 29 1 -0.2156 -7.0655 3.2643 30 1 2.7127 -7.9265 3.0915 31 1 -0.0168 -9.3336 3.7295 32 1 1.6085 -10.1741 3.4982 33 1 2.5648 -8.8596 5.4455 34 1 0.9392 -8.0195 5.6764 35 1 2.5575 -3.8464 -0.8983 36 1 2.5308 -3.8679 0.8858 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009883469.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:23 Heat of formation + Delta-G solvation = -11.957611 kcal Electronic energy + Delta-G solvation = -16956.977119 eV Core-core repulsion = 14248.548818 eV Total energy + Delta-G solvation = -2708.428301 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.00390 -39.06622 -37.79472 -35.46016 -33.65158 -31.28378 -30.28426 -28.64709 -26.43529 -23.20858 -22.84107 -22.06737 -21.29650 -20.94223 -18.99309 -18.16169 -17.39317 -16.71851 -16.49712 -16.02083 -15.63995 -15.15183 -14.84791 -14.60064 -14.23415 -13.83735 -13.40876 -13.36319 -12.97776 -12.82367 -12.38401 -12.31336 -12.29249 -12.11648 -11.99571 -11.85058 -11.46290 -11.26826 -10.94253 -10.76824 -10.69827 -10.04383 -8.90317 -7.79190 -5.23158 1.46569 1.46961 1.57529 1.69955 2.24434 2.48575 2.96762 3.30753 3.65808 3.76816 3.80638 3.87199 4.06891 4.09680 4.21263 4.30617 4.56351 4.64319 4.69144 4.73755 4.81643 4.83187 4.91152 5.02181 5.04496 5.08849 5.30493 5.37811 5.43453 5.60191 5.64479 5.80181 6.31260 6.63734 7.10794 7.31805 7.76216 8.39511 9.22158 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.040319 B = 0.004967 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.295974 B = 5635.897458 C = 5881.898449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.060 4.060 3 Si 0.979 3.021 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.622 5.622 10 C 0.153 3.847 11 C -0.132 4.132 12 C 0.145 3.855 13 H 0.093 0.907 14 N -0.708 5.708 15 C 0.510 3.490 16 O -0.586 6.586 17 C -0.100 4.100 18 C -0.163 4.163 19 C -0.176 4.176 20 C -0.166 4.166 21 C 0.126 3.874 22 H 0.249 0.751 23 H -0.001 1.001 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.100 0.900 27 H 0.411 0.589 28 H 0.110 0.890 29 H 0.122 0.878 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.023 0.977 36 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.217 -14.388 7.431 16.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.253 4.253 3 Si 0.807 3.193 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.349 5.349 10 C 0.028 3.972 11 C -0.170 4.170 12 C 0.039 3.961 13 H 0.111 0.889 14 N -0.359 5.359 15 C 0.299 3.701 16 O -0.467 6.467 17 C -0.140 4.140 18 C -0.182 4.182 19 C -0.213 4.213 20 C -0.203 4.203 21 C -0.001 4.001 22 H 0.059 0.941 23 H 0.017 0.983 24 H 0.095 0.905 25 H 0.098 0.902 26 H 0.118 0.882 27 H 0.247 0.753 28 H 0.128 0.872 29 H 0.140 0.860 30 H 0.106 0.894 31 H 0.125 0.875 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.129 0.871 35 H 0.041 0.959 36 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -2.628 -14.564 6.967 16.357 hybrid contribution 0.445 1.337 0.073 1.411 sum -2.182 -13.227 7.040 15.142 Atomic orbital electron populations 1.70010 1.05913 1.25042 1.58350 1.25544 0.96691 1.00596 1.02420 0.85010 0.77867 0.79456 0.76962 1.19763 1.21499 1.21618 1.19433 0.90820 0.83990 1.43007 0.91036 1.44790 1.03022 1.00304 1.86769 1.21846 0.83560 0.94772 0.97011 1.23199 0.97405 0.95559 1.00877 1.21697 0.95125 0.95137 0.84160 0.88923 1.45966 1.39750 1.33370 1.16822 1.21278 0.80411 0.78816 0.89626 1.90647 1.33666 1.58699 1.63658 1.21238 1.02138 0.98806 0.91792 1.21962 1.00621 0.94674 1.00896 1.23126 1.01040 0.94400 1.02738 1.23087 1.03625 1.03197 0.90387 1.21772 0.95274 0.85781 0.97231 0.94144 0.98266 0.90533 0.90165 0.88163 0.75314 0.87200 0.86039 0.89416 0.87480 0.88947 0.88325 0.87081 0.95913 0.97333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.88 10.08 21.65 0.22 -54.66 16 2 C -0.06 -3.37 5.49 84.86 0.47 -2.90 16 3 Si 0.98 45.71 29.55 68.60 2.03 47.73 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 6 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 7 C -0.24 -13.94 10.27 84.04 0.86 -13.08 16 8 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.62 -32.41 3.39 -691.54 -2.35 -34.76 16 10 C 0.15 7.15 5.89 86.93 0.51 7.66 16 11 C -0.13 -4.55 6.65 32.06 0.21 -4.33 16 12 C 0.14 5.12 3.25 46.18 0.15 5.27 16 13 H 0.09 3.23 7.69 -2.38 -0.02 3.21 16 14 N -0.71 -21.23 5.11 -436.91 -2.23 -23.46 16 15 C 0.51 15.36 7.83 87.66 0.69 16.04 16 16 O -0.59 -22.49 15.29 -3.04 -0.05 -22.54 16 17 C -0.10 -2.06 5.98 29.85 0.18 -1.89 16 18 C -0.16 -3.53 5.41 -10.79 -0.06 -3.59 16 19 C -0.18 -3.00 10.18 30.59 0.31 -2.69 16 20 C -0.17 -2.62 10.25 30.59 0.31 -2.30 16 21 C 0.13 5.65 6.98 86.73 0.61 6.25 16 22 H 0.25 13.97 8.31 -92.70 -0.77 13.20 16 23 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 24 H 0.08 4.12 5.85 -2.39 -0.01 4.11 16 25 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 26 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 27 H 0.41 10.58 8.62 -92.71 -0.80 9.78 16 28 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.12 1.79 7.87 -2.39 -0.02 1.77 16 30 H 0.09 2.44 7.30 -2.38 -0.02 2.42 16 31 H 0.11 1.51 8.03 -2.39 -0.02 1.49 16 32 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.01 0.41 8.05 -2.39 -0.02 0.39 16 Total: -1.00 -69.07 297.62 2.12 -66.95 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.27 Total: 16.29 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 4.24 Total: 4.45 kcal Atomic # 7 Polarization: -108.52 SS G_CDS: -4.36 Total: -112.89 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.05 Total: -22.54 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -69.07 2.12 -66.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009883469.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.991 kcal (2) G-P(sol) polarization free energy of solvation -69.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds