Wall clock time and date at job start Sun Mar 29 2020 22:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99968 * 2 1 4 4 H 1.48501 * 109.47248 * 274.99001 * 3 2 1 5 5 H 1.48501 * 109.47097 * 34.99305 * 3 2 1 6 6 H 1.48501 * 109.47174 * 154.98975 * 3 2 1 7 7 C 1.38809 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99586 * 187.04950 * 7 2 1 9 9 N 1.36936 * 120.00437 * 7.04975 * 7 2 1 10 10 C 1.47023 * 125.64835 * 354.78650 * 9 7 2 11 11 C 1.54326 * 107.27271 * 178.98897 * 10 9 7 12 12 C 1.55162 * 102.93749 * 337.80635 * 11 10 9 13 13 H 1.08999 * 110.99742 * 153.61622 * 12 11 10 14 14 N 1.46495 * 111.00401 * 277.42633 * 12 11 10 15 15 C 1.34775 * 120.00331 * 205.00379 * 14 12 11 16 16 O 1.21287 * 119.99622 * 0.02562 * 15 14 12 17 17 C 1.50698 * 120.00406 * 179.97438 * 15 14 12 18 18 C 1.53005 * 109.47093 * 179.97438 * 17 15 14 19 19 C 1.53002 * 117.49665 * 185.00238 * 18 17 15 20 20 C 1.53001 * 60.03276 * 252.52545 * 19 18 17 21 21 C 1.47429 * 125.64787 * 174.84249 * 9 7 2 22 22 H 0.96995 * 119.99996 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.88338 * 59.56807 * 10 9 7 24 24 H 1.09002 * 110.00775 * 298.47666 * 10 9 7 25 25 H 1.08999 * 110.71285 * 219.44438 * 11 10 9 26 26 H 1.08995 * 110.71786 * 96.16688 * 11 10 9 27 27 H 0.97003 * 120.00532 * 25.00469 * 14 12 11 28 28 H 1.09002 * 109.46592 * 60.00680 * 17 15 14 29 29 H 1.09000 * 109.47367 * 300.00086 * 17 15 14 30 30 H 1.08999 * 115.56382 * 330.69435 * 18 17 15 31 31 H 1.08995 * 117.49689 * 145.02781 * 19 18 17 32 32 H 1.09003 * 117.49903 * 0.02562 * 19 18 17 33 33 H 1.09006 * 117.50205 * 107.47685 * 20 19 18 34 34 H 1.08997 * 117.50274 * 252.47933 * 20 19 18 35 35 H 1.08999 * 110.36669 * 85.24647 * 21 9 7 36 36 H 1.08997 * 110.36742 * 322.91935 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5044 2.6199 0.8029 6 1 3.5965 1.4120 0.5919 7 6 2.0102 -1.2021 -0.0005 8 1 3.0841 -1.2057 0.1143 9 7 1.3333 -2.3835 -0.1466 10 6 -0.1283 -2.5323 -0.2030 11 6 -0.4288 -4.0333 -0.3993 12 6 0.8911 -4.5750 -1.0092 13 1 1.0198 -5.6337 -0.7840 14 7 0.9375 -4.3390 -2.4543 15 6 1.6943 -5.1283 -3.2421 16 8 2.3367 -6.0343 -2.7546 17 6 1.7416 -4.8860 -4.7287 18 6 2.6674 -5.9130 -5.3837 19 6 2.9424 -5.7625 -6.8812 20 6 2.0428 -6.8938 -6.3793 21 6 1.9495 -3.7170 -0.2722 22 1 -0.4850 0.8400 0.0004 23 1 -0.5269 -1.9616 -1.0418 24 1 -0.5749 -2.1835 0.7281 25 1 -1.2593 -4.1729 -1.0913 26 1 -0.6372 -4.5131 0.5569 27 1 0.4235 -3.6147 -2.8443 28 1 2.1196 -3.8819 -4.9212 29 1 0.7388 -4.9828 -5.1447 30 1 3.4801 -6.2807 -4.7572 31 1 3.9359 -6.0311 -7.2400 32 1 2.4641 -4.9315 -7.3997 33 1 0.9726 -6.8069 -6.5672 34 1 2.4444 -7.9067 -6.4081 35 1 2.1561 -4.1337 0.7136 36 1 2.8657 -3.6577 -0.8596 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009883482.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:25 Heat of formation + Delta-G solvation = 6.266882 kcal Electronic energy + Delta-G solvation = -17058.464276 eV Core-core repulsion = 14350.826249 eV Total energy + Delta-G solvation = -2707.638027 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.63005 -37.63694 -36.66285 -33.67222 -31.87372 -29.71432 -28.89505 -27.01217 -24.43916 -22.45444 -21.64852 -20.15311 -19.93949 -19.68286 -17.23663 -16.64995 -15.97414 -15.33629 -14.77305 -14.63202 -14.20389 -13.73957 -13.60730 -13.06517 -12.75154 -12.12551 -11.91454 -11.80802 -11.59774 -11.44542 -10.94926 -10.92144 -10.69464 -10.43471 -10.33284 -10.12685 -10.04105 -9.95441 -9.70299 -9.43782 -8.70157 -8.48713 -6.82583 -5.74353 -3.05682 2.97818 3.38780 3.44880 3.46496 3.50029 3.81465 4.49412 4.66415 4.81723 4.88117 5.13453 5.33266 5.42286 5.45357 5.48574 5.54642 5.60374 5.71026 5.79864 5.82976 5.85127 6.02333 6.21903 6.29630 6.38731 6.49713 6.55534 6.70294 7.08789 7.52554 7.55634 7.78836 7.94765 8.23792 8.60573 9.20809 9.80982 10.47448 11.38011 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.028407 B = 0.005801 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.446844 B = 4825.588363 C = 5368.205479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.175 3.825 11 C -0.154 4.154 12 C 0.128 3.872 13 H 0.089 0.911 14 N -0.706 5.706 15 C 0.515 3.485 16 O -0.551 6.551 17 C -0.112 4.112 18 C -0.135 4.135 19 C -0.183 4.183 20 C -0.180 4.180 21 C 0.125 3.875 22 H 0.252 0.748 23 H 0.047 0.953 24 H 0.042 0.958 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.403 0.597 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.118 0.882 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.026 0.974 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.030 -9.749 -10.151 14.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.050 3.950 11 C -0.192 4.192 12 C 0.022 3.978 13 H 0.107 0.893 14 N -0.356 5.356 15 C 0.301 3.699 16 O -0.430 6.430 17 C -0.152 4.152 18 C -0.154 4.154 19 C -0.220 4.220 20 C -0.217 4.217 21 C -0.002 4.002 22 H 0.062 0.938 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.237 0.763 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.136 0.864 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.044 0.956 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.371 -10.161 -9.759 14.094 hybrid contribution 0.147 1.376 -0.132 1.390 sum 0.518 -8.785 -9.892 13.240 Atomic orbital electron populations 1.69967 1.04862 1.24974 1.57174 1.24785 0.95686 0.97562 1.02325 0.86130 0.78742 0.83666 0.77460 1.21689 1.21791 1.20666 1.19070 0.91127 0.82570 1.42617 0.90535 1.44483 1.01474 1.00963 1.86154 1.21174 0.84681 0.88175 1.00978 1.23215 0.95637 1.00339 1.00048 1.22113 0.97161 0.99184 0.79349 0.89316 1.45859 1.48038 1.33854 1.07800 1.20469 0.78917 0.81679 0.88845 1.90648 1.43755 1.32292 1.76268 1.21221 1.00891 1.00642 0.92420 1.22064 1.02000 0.99906 0.91394 1.22993 1.01063 1.01111 0.96810 1.23028 0.98976 0.95387 1.04330 1.21947 0.94978 0.86900 0.96402 0.93818 0.93489 0.93996 0.91641 0.91042 0.76302 0.88414 0.89082 0.86409 0.88836 0.88816 0.88960 0.88938 0.95591 0.93938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.53 10.36 55.49 0.57 -25.96 16 2 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 3 Si 0.91 21.98 29.56 -169.99 -5.02 16.96 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.23 -6.27 10.26 -15.06 -0.15 -6.42 16 8 H 0.08 2.10 7.84 -52.49 -0.41 1.68 16 9 N -0.60 -15.20 3.39 -170.07 -0.58 -15.77 16 10 C 0.17 4.06 5.37 -3.06 -0.02 4.05 16 11 C -0.15 -2.73 6.55 -24.89 -0.16 -2.90 16 12 C 0.13 2.31 3.43 -65.78 -0.23 2.08 16 13 H 0.09 1.58 7.54 -51.93 -0.39 1.18 16 14 N -0.71 -11.60 5.19 -51.73 -0.27 -11.87 16 15 C 0.51 8.29 7.83 -10.99 -0.09 8.20 16 16 O -0.55 -10.65 15.20 5.55 0.08 -10.57 16 17 C -0.11 -1.36 5.98 -27.88 -0.17 -1.52 16 18 C -0.14 -1.62 5.42 -90.58 -0.49 -2.11 16 19 C -0.18 -1.76 10.25 -26.73 -0.27 -2.03 16 20 C -0.18 -1.81 10.18 -26.69 -0.27 -2.08 16 21 C 0.12 2.69 6.93 -2.53 -0.02 2.67 16 22 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 23 H 0.05 1.18 7.30 -51.93 -0.38 0.80 16 24 H 0.04 1.09 7.61 -51.93 -0.40 0.70 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.40 6.23 8.67 -40.82 -0.35 5.88 16 28 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.09 0.92 7.88 -51.93 -0.41 0.51 16 30 H 0.12 1.64 7.31 -51.93 -0.38 1.26 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.84 8.03 -51.93 -0.42 0.43 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 298.32 15.07 4.50 4.50 Total: -1.00 -31.17 298.32 -8.33 -39.50 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.65 Total: 3.59 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -1.96 Total: -0.37 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.27 Total: -53.61 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.08 Total: -10.57 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.17 -8.33 -39.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009883482.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.768 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds