Wall clock time and date at job start Sun Mar 29 2020 22:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99968 * 2 1 4 4 H 1.48501 * 109.47248 * 274.99001 * 3 2 1 5 5 H 1.48501 * 109.47097 * 34.99305 * 3 2 1 6 6 H 1.48501 * 109.47174 * 154.98975 * 3 2 1 7 7 C 1.38809 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99586 * 187.04950 * 7 2 1 9 9 N 1.36936 * 120.00437 * 7.04975 * 7 2 1 10 10 C 1.47023 * 125.64835 * 354.78650 * 9 7 2 11 11 C 1.54326 * 107.27271 * 178.98897 * 10 9 7 12 12 C 1.55162 * 102.93749 * 337.80635 * 11 10 9 13 13 H 1.08999 * 110.99742 * 153.61622 * 12 11 10 14 14 N 1.46495 * 111.00401 * 277.42633 * 12 11 10 15 15 C 1.34775 * 120.00331 * 205.00379 * 14 12 11 16 16 O 1.21287 * 119.99622 * 0.02562 * 15 14 12 17 17 C 1.50698 * 120.00406 * 179.97438 * 15 14 12 18 18 C 1.53005 * 109.47093 * 179.97438 * 17 15 14 19 19 C 1.53002 * 117.49665 * 185.00238 * 18 17 15 20 20 C 1.53001 * 60.03276 * 252.52545 * 19 18 17 21 21 C 1.47429 * 125.64787 * 174.84249 * 9 7 2 22 22 H 0.96995 * 119.99996 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.88338 * 59.56807 * 10 9 7 24 24 H 1.09002 * 110.00775 * 298.47666 * 10 9 7 25 25 H 1.08999 * 110.71285 * 219.44438 * 11 10 9 26 26 H 1.08995 * 110.71786 * 96.16688 * 11 10 9 27 27 H 0.97003 * 120.00532 * 25.00469 * 14 12 11 28 28 H 1.09002 * 109.46592 * 60.00680 * 17 15 14 29 29 H 1.09000 * 109.47367 * 300.00086 * 17 15 14 30 30 H 1.08999 * 115.56382 * 330.69435 * 18 17 15 31 31 H 1.08995 * 117.49689 * 145.02781 * 19 18 17 32 32 H 1.09003 * 117.49903 * 0.02562 * 19 18 17 33 33 H 1.09006 * 117.50205 * 107.47685 * 20 19 18 34 34 H 1.08997 * 117.50274 * 252.47933 * 20 19 18 35 35 H 1.08999 * 110.36669 * 85.24647 * 21 9 7 36 36 H 1.08997 * 110.36742 * 322.91935 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5044 2.6199 0.8029 6 1 3.5965 1.4120 0.5919 7 6 2.0102 -1.2021 -0.0005 8 1 3.0841 -1.2057 0.1143 9 7 1.3333 -2.3835 -0.1466 10 6 -0.1283 -2.5323 -0.2030 11 6 -0.4288 -4.0333 -0.3993 12 6 0.8911 -4.5750 -1.0092 13 1 1.0198 -5.6337 -0.7840 14 7 0.9375 -4.3390 -2.4543 15 6 1.6943 -5.1283 -3.2421 16 8 2.3367 -6.0343 -2.7546 17 6 1.7416 -4.8860 -4.7287 18 6 2.6674 -5.9130 -5.3837 19 6 2.9424 -5.7625 -6.8812 20 6 2.0428 -6.8938 -6.3793 21 6 1.9495 -3.7170 -0.2722 22 1 -0.4850 0.8400 0.0004 23 1 -0.5269 -1.9616 -1.0418 24 1 -0.5749 -2.1835 0.7281 25 1 -1.2593 -4.1729 -1.0913 26 1 -0.6372 -4.5131 0.5569 27 1 0.4235 -3.6147 -2.8443 28 1 2.1196 -3.8819 -4.9212 29 1 0.7388 -4.9828 -5.1447 30 1 3.4801 -6.2807 -4.7572 31 1 3.9359 -6.0311 -7.2400 32 1 2.4641 -4.9315 -7.3997 33 1 0.9726 -6.8069 -6.5672 34 1 2.4444 -7.9067 -6.4081 35 1 2.1561 -4.1337 0.7136 36 1 2.8657 -3.6577 -0.8596 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009883482.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:25 Heat of formation + Delta-G solvation = -13.695244 kcal Electronic energy + Delta-G solvation = -17059.329899 eV Core-core repulsion = 14350.826249 eV Total energy + Delta-G solvation = -2708.503650 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.96278 -39.06343 -37.78292 -35.36474 -33.65327 -31.26567 -30.31789 -28.66366 -26.39547 -23.20905 -22.88801 -21.94747 -21.29248 -20.91932 -18.96926 -18.11956 -17.37238 -16.67246 -16.48249 -15.98882 -15.63874 -15.30818 -14.84127 -14.46421 -14.15908 -13.82186 -13.59061 -13.31960 -12.87129 -12.82258 -12.38571 -12.29397 -12.26103 -12.07057 -12.01235 -11.84581 -11.60399 -11.26213 -10.93314 -10.70338 -10.68275 -10.01588 -8.86413 -7.86636 -5.19791 1.46521 1.46866 1.56219 1.71223 2.28513 2.49202 2.97049 3.32329 3.67806 3.73453 3.81431 3.89210 4.07458 4.10483 4.21655 4.32992 4.55766 4.67613 4.70074 4.75173 4.82045 4.83229 4.90181 5.00811 5.04191 5.08706 5.30549 5.38053 5.44700 5.61672 5.68456 5.77007 6.19745 6.65906 7.11416 7.32673 7.76745 8.41633 9.23876 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.028407 B = 0.005801 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.446844 B = 4825.588363 C = 5368.205479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.056 4.056 3 Si 0.973 3.027 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.620 5.620 10 C 0.183 3.817 11 C -0.133 4.133 12 C 0.140 3.860 13 H 0.099 0.901 14 N -0.705 5.705 15 C 0.512 3.488 16 O -0.586 6.586 17 C -0.102 4.102 18 C -0.161 4.161 19 C -0.167 4.167 20 C -0.175 4.175 21 C 0.122 3.878 22 H 0.248 0.752 23 H 0.024 0.976 24 H 0.006 0.994 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.408 0.592 28 H 0.106 0.894 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.028 0.972 36 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.339 -10.151 -11.643 15.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.250 4.250 3 Si 0.802 3.198 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.199 1.199 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.347 5.347 10 C 0.058 3.942 11 C -0.172 4.172 12 C 0.034 3.966 13 H 0.117 0.883 14 N -0.355 5.355 15 C 0.300 3.700 16 O -0.467 6.467 17 C -0.141 4.141 18 C -0.180 4.180 19 C -0.204 4.204 20 C -0.212 4.212 21 C -0.005 4.005 22 H 0.057 0.943 23 H 0.042 0.958 24 H 0.024 0.976 25 H 0.113 0.887 26 H 0.106 0.894 27 H 0.244 0.756 28 H 0.125 0.875 29 H 0.137 0.863 30 H 0.108 0.892 31 H 0.118 0.882 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.046 0.954 36 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 0.068 -10.580 -11.267 15.456 hybrid contribution 0.292 1.470 0.359 1.542 sum 0.360 -9.109 -10.908 14.216 Atomic orbital electron populations 1.70156 1.06004 1.25315 1.57849 1.25527 0.96557 1.00501 1.02386 0.85140 0.77713 0.79570 0.77382 1.21181 1.21986 1.19915 1.19355 0.91339 0.84046 1.42622 0.90966 1.44709 1.02495 1.01526 1.85981 1.20972 0.83451 0.91624 0.98166 1.23069 0.96343 0.96015 1.01740 1.21908 0.95718 0.98815 0.80180 0.88275 1.45877 1.48287 1.34179 1.07120 1.21195 0.77678 0.80694 0.90420 1.90632 1.45014 1.33806 1.77245 1.21231 1.02583 1.01090 0.89236 1.21966 1.02114 1.01439 0.92459 1.23085 1.01530 1.01234 0.94554 1.23135 0.99873 0.95453 1.02771 1.22061 0.95443 0.86151 0.96818 0.94256 0.95814 0.97557 0.88735 0.89374 0.75615 0.87549 0.86328 0.89190 0.88203 0.87307 0.87619 0.88766 0.95387 0.95428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.14 10.36 21.65 0.22 -54.91 16 2 C -0.06 -3.15 5.48 84.86 0.46 -2.68 16 3 Si 0.97 45.38 29.56 68.60 2.03 47.41 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.24 -13.77 10.26 84.03 0.86 -12.91 16 8 H 0.07 4.01 7.84 -2.91 -0.02 3.99 16 9 N -0.62 -31.54 3.39 -691.98 -2.35 -33.89 16 10 C 0.18 8.54 5.37 86.73 0.47 9.01 16 11 C -0.13 -4.50 6.55 31.79 0.21 -4.29 16 12 C 0.14 4.88 3.43 46.39 0.16 5.04 16 13 H 0.10 3.34 7.54 -2.39 -0.02 3.32 16 14 N -0.70 -22.16 5.19 -435.97 -2.26 -24.42 16 15 C 0.51 15.86 7.83 87.66 0.69 16.55 16 16 O -0.59 -22.42 15.20 -3.05 -0.05 -22.47 16 17 C -0.10 -2.26 5.98 29.85 0.18 -2.08 16 18 C -0.16 -3.62 5.42 -10.77 -0.06 -3.68 16 19 C -0.17 -2.79 10.25 30.60 0.31 -2.47 16 20 C -0.18 -3.11 10.18 30.62 0.31 -2.80 16 21 C 0.12 5.24 6.93 86.85 0.60 5.85 16 22 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 23 H 0.02 1.21 7.30 -2.39 -0.02 1.19 16 24 H 0.01 0.33 7.61 -2.39 -0.02 0.31 16 25 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 26 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 27 H 0.41 11.97 8.67 -92.71 -0.80 11.17 16 28 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.12 1.98 7.88 -2.39 -0.02 1.97 16 30 H 0.09 2.53 7.31 -2.39 -0.02 2.52 16 31 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.11 1.59 8.03 -2.38 -0.02 1.57 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -67.82 298.32 2.05 -65.77 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.26 Total: 16.99 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 4.19 Total: 5.52 kcal Atomic # 7 Polarization: -108.83 SS G_CDS: -4.39 Total: -113.22 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.05 Total: -22.47 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -67.82 2.05 -65.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009883482.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.078 kcal (2) G-P(sol) polarization free energy of solvation -67.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds