Wall clock time and date at job start Sun Mar 29 2020 22:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 115.55156 * 2 1 4 4 O 1.21279 * 120.00222 * 214.41588 * 3 2 1 5 5 N 1.34777 * 120.00006 * 34.41246 * 3 2 1 6 6 C 1.46504 * 120.00138 * 179.97438 * 5 3 2 7 7 H 1.09000 * 110.88287 * 37.43094 * 6 5 3 8 8 C 1.55160 * 111.03362 * 161.33337 * 6 5 3 9 9 C 1.54329 * 102.93883 * 153.59601 * 8 6 5 10 10 N 1.47025 * 107.26934 * 337.80445 * 9 8 6 11 11 C 1.36941 * 125.64801 * 178.97755 * 10 9 8 12 12 H 1.07996 * 119.99797 * 174.77040 * 11 10 9 13 13 C 1.38814 * 119.99801 * 354.77557 * 11 10 9 14 14 N 1.31622 * 120.00025 * 7.05127 * 13 11 10 15 15 Si 1.86797 * 119.99980 * 187.05721 * 13 11 10 16 16 H 1.48496 * 109.47551 * 94.98082 * 15 13 11 17 17 H 1.48498 * 109.47148 * 214.98647 * 15 13 11 18 18 H 1.48502 * 109.47053 * 334.97956 * 15 13 11 19 19 C 1.47424 * 108.70538 * 358.94085 * 10 9 8 20 20 C 1.53003 * 117.49606 * 145.66792 * 2 1 3 21 21 C 1.53002 * 117.49843 * 214.32405 * 2 1 3 22 22 H 1.09010 * 109.46582 * 85.58503 * 1 2 3 23 23 H 1.08996 * 109.47276 * 205.58201 * 1 2 3 24 24 H 1.08995 * 109.47232 * 325.58352 * 1 2 3 25 25 H 0.97001 * 119.99798 * 0.02562 * 5 3 2 26 26 H 1.09004 * 110.71826 * 271.95431 * 8 6 5 27 27 H 1.08992 * 110.72275 * 35.05321 * 8 6 5 28 28 H 1.08995 * 109.88494 * 97.22404 * 9 8 6 29 29 H 1.09003 * 109.87632 * 218.38933 * 9 8 6 30 30 H 0.96995 * 120.00030 * 180.02562 * 14 13 11 31 31 H 1.08999 * 110.37070 * 265.29136 * 19 10 9 32 32 H 1.08999 * 110.36574 * 142.96154 * 19 10 9 33 33 H 1.08999 * 117.49996 * 215.00683 * 20 2 1 34 34 H 1.08998 * 117.49758 * 0.02869 * 20 2 1 35 35 H 1.09000 * 117.49929 * 359.97438 * 21 2 1 36 36 H 1.09003 * 117.49446 * 144.99681 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 8 3.2233 1.5330 -0.5936 5 7 1.6019 2.3829 0.6596 6 6 2.2341 3.7045 0.6601 7 1 2.6884 3.9183 -0.3074 8 6 1.2168 4.8083 1.0530 9 6 2.1163 5.9092 1.6536 10 7 3.3668 5.2656 2.0821 11 6 4.4383 5.9022 2.6494 12 1 5.2798 5.3279 3.0078 13 6 4.4428 7.2856 2.7639 14 7 3.3645 7.9749 2.4566 15 14 5.9794 8.1689 3.3539 16 1 6.7734 8.6173 2.1819 17 1 5.5905 9.3479 4.1687 18 1 6.7957 7.2437 4.1802 19 6 3.2758 3.8213 1.8007 20 6 2.2364 -1.1208 0.7654 21 6 2.2365 -1.1208 -0.7653 22 1 -0.3633 0.0791 -1.0247 23 1 -0.3633 -0.9269 0.4437 24 1 -0.3633 0.8477 0.5808 25 1 0.7677 2.2441 1.1347 26 1 0.6901 5.1780 0.1732 27 1 0.5109 4.4357 1.7952 28 1 2.3287 6.6668 0.8994 29 1 1.6213 6.3653 2.5110 30 1 3.3677 8.9416 2.5362 31 1 2.9326 3.2835 2.6845 32 1 4.2417 3.4371 1.4729 33 1 3.1713 -0.8747 1.2691 34 1 1.6111 -1.8583 1.2686 35 1 1.6112 -1.8584 -1.2684 36 1 3.1714 -0.8747 -1.2688 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014533890.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:28 Heat of formation + Delta-G solvation = 11.268236 kcal Electronic energy + Delta-G solvation = -17124.448619 eV Core-core repulsion = 14417.027467 eV Total energy + Delta-G solvation = -2707.421152 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.05656 -37.65689 -36.32846 -34.03382 -31.88487 -29.31924 -28.73412 -27.06172 -24.67695 -23.09051 -22.59030 -20.36758 -20.12022 -19.21421 -17.16130 -16.69259 -15.99700 -14.89344 -14.66517 -14.51346 -14.36799 -13.81919 -13.27920 -12.91937 -12.65185 -12.41420 -12.38019 -12.15781 -11.79987 -11.59956 -10.96529 -10.90672 -10.72360 -10.67472 -10.35400 -10.11455 -10.07353 -9.89885 -9.73133 -9.50670 -8.70367 -8.55776 -6.82085 -5.71376 -3.03426 2.65494 3.30694 3.43115 3.48393 3.49998 3.75577 4.49329 4.52525 4.68142 4.73941 4.85606 5.27923 5.43551 5.45704 5.48515 5.51971 5.57998 5.64464 5.76472 5.77113 5.82377 5.93745 6.04001 6.20902 6.35000 6.42459 6.62856 6.73425 7.00666 7.52816 7.60635 7.75136 7.83793 8.25971 8.46633 9.23053 9.83209 10.48784 11.41092 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.047573 B = 0.005205 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.431502 B = 5378.009662 C = 5733.846351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.167 4.167 3 C 0.546 3.454 4 O -0.540 6.540 5 N -0.712 5.712 6 C 0.127 3.873 7 H 0.093 0.907 8 C -0.149 4.149 9 C 0.178 3.822 10 N -0.604 5.604 11 C -0.228 4.228 12 H 0.078 0.922 13 C -0.007 4.007 14 N -0.922 5.922 15 Si 0.911 3.089 16 H -0.288 1.288 17 H -0.291 1.291 18 H -0.281 1.281 19 C 0.130 3.870 20 C -0.150 4.150 21 C -0.146 4.146 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.397 0.603 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.044 0.956 30 H 0.252 0.748 31 H 0.018 0.982 32 H 0.043 0.957 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.400 -15.543 -3.914 18.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.171 4.171 3 C 0.331 3.669 4 O -0.417 6.417 5 N -0.363 5.363 6 C 0.022 3.978 7 H 0.111 0.889 8 C -0.188 4.188 9 C 0.053 3.947 10 N -0.331 5.331 11 C -0.356 4.356 12 H 0.096 0.904 13 C -0.203 4.203 14 N -0.569 5.569 15 Si 0.742 3.258 16 H -0.216 1.216 17 H -0.218 1.218 18 H -0.206 1.206 19 C 0.003 3.997 20 C -0.188 4.188 21 C -0.183 4.183 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.232 0.768 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.036 0.964 32 H 0.062 0.938 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.585 -15.162 -4.278 17.485 hybrid contribution 0.307 0.523 0.602 0.854 sum -7.278 -14.639 -3.675 16.757 Atomic orbital electron populations 1.21342 0.90642 1.02510 1.02524 1.21526 0.95806 0.89940 1.09791 1.19440 0.84367 0.84693 0.78352 1.90702 1.23144 1.83692 1.44124 1.45984 1.26868 1.10200 1.53250 1.22306 0.94711 0.80175 1.00559 0.88890 1.23171 0.97894 0.97361 1.00332 1.21155 0.84596 0.90997 0.97912 1.44395 1.15287 1.01116 1.72281 1.19083 0.95068 0.89454 1.31981 0.90373 1.24816 0.97684 0.96139 1.01681 1.69960 1.26343 1.05992 1.54639 0.86101 0.82422 0.79287 0.78007 1.21563 1.21765 1.20615 1.21819 0.96632 0.87476 0.93819 1.23100 1.02219 0.98387 0.95084 1.23019 1.02716 0.98248 0.94365 0.91645 0.91608 0.91823 0.76837 0.91593 0.92048 0.93065 0.93746 0.93741 0.96391 0.93839 0.88230 0.87938 0.88153 0.87451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 9.79 37.16 0.36 -0.58 16 2 C -0.17 -1.90 2.61 -155.66 -0.41 -2.30 16 3 C 0.55 8.57 7.39 -10.99 -0.08 8.49 16 4 O -0.54 -10.76 16.00 5.56 0.09 -10.67 16 5 N -0.71 -10.68 5.13 -51.73 -0.27 -10.94 16 6 C 0.13 2.39 3.32 -65.78 -0.22 2.18 16 7 H 0.09 1.93 7.73 -51.93 -0.40 1.53 16 8 C -0.15 -2.71 6.58 -24.89 -0.16 -2.87 16 9 C 0.18 4.34 5.38 -3.06 -0.02 4.33 16 10 N -0.60 -15.95 3.39 -170.07 -0.58 -16.52 16 11 C -0.23 -6.55 10.27 -15.06 -0.15 -6.71 16 12 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 13 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 14 N -0.92 -27.32 10.36 55.49 0.57 -26.74 16 15 Si 0.91 22.51 29.56 -169.99 -5.02 17.49 16 16 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 17 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 C 0.13 2.90 6.93 -2.53 -0.02 2.88 16 20 C -0.15 -1.49 9.88 -26.69 -0.26 -1.76 16 21 C -0.15 -1.51 9.77 -26.69 -0.26 -1.77 16 22 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 23 H 0.06 0.43 7.90 -51.93 -0.41 0.02 16 24 H 0.06 0.49 6.39 -51.93 -0.33 0.16 16 25 H 0.40 4.75 6.82 -40.82 -0.28 4.47 16 26 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.06 0.99 7.99 -51.93 -0.42 0.57 16 28 H 0.05 1.38 7.30 -51.93 -0.38 1.00 16 29 H 0.04 1.18 7.61 -51.93 -0.40 0.78 16 30 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.10 0.77 8.05 -51.93 -0.42 0.35 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.11 1.30 7.67 -51.93 -0.40 0.90 16 LS Contribution 295.60 15.07 4.45 4.45 Total: -1.00 -32.79 295.60 -7.57 -40.36 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -5.51 Total: 0.99 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -1.31 Total: 1.58 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -0.27 Total: -54.21 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.79 -7.57 -40.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014533890.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.631 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds