Wall clock time and date at job start Sun Mar 29 2020 22:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 115.55156 * 2 1 4 4 O 1.21279 * 120.00222 * 214.41588 * 3 2 1 5 5 N 1.34777 * 120.00006 * 34.41246 * 3 2 1 6 6 C 1.46504 * 120.00138 * 179.97438 * 5 3 2 7 7 H 1.09000 * 110.88287 * 37.43094 * 6 5 3 8 8 C 1.55160 * 111.03362 * 161.33337 * 6 5 3 9 9 C 1.54329 * 102.93883 * 153.59601 * 8 6 5 10 10 N 1.47025 * 107.26934 * 337.80445 * 9 8 6 11 11 C 1.36941 * 125.64801 * 178.97755 * 10 9 8 12 12 H 1.07996 * 119.99797 * 174.77040 * 11 10 9 13 13 C 1.38814 * 119.99801 * 354.77557 * 11 10 9 14 14 N 1.31622 * 120.00025 * 7.05127 * 13 11 10 15 15 Si 1.86797 * 119.99980 * 187.05721 * 13 11 10 16 16 H 1.48496 * 109.47551 * 94.98082 * 15 13 11 17 17 H 1.48498 * 109.47148 * 214.98647 * 15 13 11 18 18 H 1.48502 * 109.47053 * 334.97956 * 15 13 11 19 19 C 1.47424 * 108.70538 * 358.94085 * 10 9 8 20 20 C 1.53003 * 117.49606 * 145.66792 * 2 1 3 21 21 C 1.53002 * 117.49843 * 214.32405 * 2 1 3 22 22 H 1.09010 * 109.46582 * 85.58503 * 1 2 3 23 23 H 1.08996 * 109.47276 * 205.58201 * 1 2 3 24 24 H 1.08995 * 109.47232 * 325.58352 * 1 2 3 25 25 H 0.97001 * 119.99798 * 0.02562 * 5 3 2 26 26 H 1.09004 * 110.71826 * 271.95431 * 8 6 5 27 27 H 1.08992 * 110.72275 * 35.05321 * 8 6 5 28 28 H 1.08995 * 109.88494 * 97.22404 * 9 8 6 29 29 H 1.09003 * 109.87632 * 218.38933 * 9 8 6 30 30 H 0.96995 * 120.00030 * 180.02562 * 14 13 11 31 31 H 1.08999 * 110.37070 * 265.29136 * 19 10 9 32 32 H 1.08999 * 110.36574 * 142.96154 * 19 10 9 33 33 H 1.08999 * 117.49996 * 215.00683 * 20 2 1 34 34 H 1.08998 * 117.49758 * 0.02869 * 20 2 1 35 35 H 1.09000 * 117.49929 * 359.97438 * 21 2 1 36 36 H 1.09003 * 117.49446 * 144.99681 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 8 3.2233 1.5330 -0.5936 5 7 1.6019 2.3829 0.6596 6 6 2.2341 3.7045 0.6601 7 1 2.6884 3.9183 -0.3074 8 6 1.2168 4.8083 1.0530 9 6 2.1163 5.9092 1.6536 10 7 3.3668 5.2656 2.0821 11 6 4.4383 5.9022 2.6494 12 1 5.2798 5.3279 3.0078 13 6 4.4428 7.2856 2.7639 14 7 3.3645 7.9749 2.4566 15 14 5.9794 8.1689 3.3539 16 1 6.7734 8.6173 2.1819 17 1 5.5905 9.3479 4.1687 18 1 6.7957 7.2437 4.1802 19 6 3.2758 3.8213 1.8007 20 6 2.2364 -1.1208 0.7654 21 6 2.2365 -1.1208 -0.7653 22 1 -0.3633 0.0791 -1.0247 23 1 -0.3633 -0.9269 0.4437 24 1 -0.3633 0.8477 0.5808 25 1 0.7677 2.2441 1.1347 26 1 0.6901 5.1780 0.1732 27 1 0.5109 4.4357 1.7952 28 1 2.3287 6.6668 0.8994 29 1 1.6213 6.3653 2.5110 30 1 3.3677 8.9416 2.5362 31 1 2.9326 3.2835 2.6845 32 1 4.2417 3.4371 1.4729 33 1 3.1713 -0.8747 1.2691 34 1 1.6111 -1.8583 1.2686 35 1 1.6112 -1.8584 -1.2684 36 1 3.1714 -0.8747 -1.2688 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014533890.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:27 Heat of formation + Delta-G solvation = -11.074210 kcal Electronic energy + Delta-G solvation = -17125.417460 eV Core-core repulsion = 14417.027467 eV Total energy + Delta-G solvation = -2708.389993 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.28338 -39.21973 -37.50329 -35.68542 -33.79530 -31.11301 -29.72487 -28.65215 -26.60229 -24.38876 -23.37192 -22.15057 -21.78790 -20.46917 -18.98277 -17.93471 -17.48462 -16.72114 -16.14828 -15.91938 -15.73663 -15.25236 -14.49416 -14.28872 -14.07206 -13.89755 -13.68558 -13.43973 -13.18936 -12.97412 -12.80682 -12.43595 -12.33463 -12.14967 -12.03941 -11.85361 -11.65067 -11.46739 -10.94692 -10.77998 -10.72252 -10.13162 -8.95179 -7.90684 -5.25748 1.43624 1.46592 1.48321 1.55196 2.06603 2.48119 2.87650 3.28326 3.59888 3.63539 3.71599 3.91693 3.93890 4.00502 4.07045 4.16646 4.54703 4.69682 4.73171 4.80800 4.83424 4.90489 4.94488 4.96193 4.98623 5.07172 5.24830 5.32976 5.38923 5.50985 5.60772 5.70261 6.15413 6.56645 7.06056 7.25220 7.71036 8.35129 9.20054 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.047573 B = 0.005205 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.431502 B = 5378.009662 C = 5733.846351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.174 4.174 3 C 0.539 3.461 4 O -0.590 6.590 5 N -0.698 5.698 6 C 0.145 3.855 7 H 0.070 0.930 8 C -0.126 4.126 9 C 0.182 3.818 10 N -0.626 5.626 11 C -0.252 4.252 12 H 0.076 0.924 13 C -0.059 4.059 14 N -0.946 5.946 15 Si 0.979 3.021 16 H -0.287 1.287 17 H -0.288 1.288 18 H -0.270 1.270 19 C 0.130 3.870 20 C -0.140 4.140 21 C -0.147 4.147 22 H 0.069 0.931 23 H 0.091 0.909 24 H 0.069 0.931 25 H 0.416 0.584 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.016 0.984 29 H 0.017 0.983 30 H 0.250 0.750 31 H 0.029 0.971 32 H 0.021 0.979 33 H 0.079 0.921 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.021 -17.373 -3.607 20.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.177 4.177 3 C 0.327 3.673 4 O -0.471 6.471 5 N -0.350 5.350 6 C 0.038 3.962 7 H 0.088 0.912 8 C -0.165 4.165 9 C 0.057 3.943 10 N -0.353 5.353 11 C -0.381 4.381 12 H 0.094 0.906 13 C -0.252 4.252 14 N -0.594 5.594 15 Si 0.806 3.194 16 H -0.214 1.214 17 H -0.215 1.215 18 H -0.194 1.194 19 C 0.003 3.997 20 C -0.177 4.177 21 C -0.184 4.184 22 H 0.088 0.912 23 H 0.110 0.890 24 H 0.088 0.912 25 H 0.255 0.745 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.034 0.966 29 H 0.036 0.964 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.039 0.961 33 H 0.098 0.902 34 H 0.155 0.845 35 H 0.150 0.850 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.247 -17.034 -3.958 19.782 hybrid contribution 0.857 1.055 0.507 1.450 sum -8.390 -15.980 -3.451 18.375 Atomic orbital electron populations 1.21394 0.87707 1.04198 1.03274 1.21563 0.97670 0.87211 1.11266 1.20320 0.83718 0.86252 0.77008 1.90684 1.25556 1.84700 1.46144 1.45757 1.27294 1.08609 1.53311 1.21801 0.94040 0.82455 0.97869 0.91187 1.22987 0.96950 0.94761 1.01767 1.20970 0.84822 0.92408 0.96071 1.44677 1.15558 1.02866 1.72164 1.19417 0.95987 0.90193 1.32461 0.90620 1.25649 1.00628 0.96757 1.02181 1.70159 1.27973 1.05876 1.55411 0.85064 0.78806 0.77990 0.77496 1.21437 1.21458 1.19437 1.21901 0.96889 0.85482 0.95408 1.23220 1.01694 0.97962 0.94855 1.23099 1.02040 0.98388 0.94885 0.91239 0.89041 0.91205 0.74534 0.89026 0.88857 0.96558 0.96438 0.94086 0.95298 0.96068 0.90197 0.84473 0.85032 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 9.79 71.98 0.70 -0.65 16 2 C -0.17 -3.51 2.61 -52.93 -0.14 -3.65 16 3 C 0.54 16.42 7.39 87.66 0.65 17.07 16 4 O -0.59 -24.05 16.00 -3.03 -0.05 -24.09 16 5 N -0.70 -19.69 5.13 -435.96 -2.24 -21.93 16 6 C 0.14 5.37 3.32 46.38 0.15 5.52 16 7 H 0.07 2.96 7.73 -2.39 -0.02 2.94 16 8 C -0.13 -4.40 6.58 31.79 0.21 -4.19 16 9 C 0.18 9.05 5.38 86.73 0.47 9.52 16 10 N -0.63 -33.86 3.39 -691.98 -2.35 -36.21 16 11 C -0.25 -14.86 10.27 84.03 0.86 -14.00 16 12 H 0.08 4.36 7.84 -2.91 -0.02 4.33 16 13 C -0.06 -3.43 5.48 84.86 0.46 -2.96 16 14 N -0.95 -57.46 10.36 21.65 0.22 -57.23 16 15 Si 0.98 46.94 29.56 68.60 2.03 48.97 16 16 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 17 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 19 C 0.13 5.88 6.93 86.86 0.60 6.48 16 20 C -0.14 -2.41 9.88 30.62 0.30 -2.11 16 21 C -0.15 -2.74 9.77 30.62 0.30 -2.44 16 22 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 23 H 0.09 0.72 7.90 -2.39 -0.02 0.70 16 24 H 0.07 0.78 6.39 -2.39 -0.02 0.77 16 25 H 0.42 8.58 6.82 -92.71 -0.63 7.95 16 26 H 0.09 2.78 8.14 -2.38 -0.02 2.76 16 27 H 0.09 2.70 7.99 -2.39 -0.02 2.68 16 28 H 0.02 0.90 7.30 -2.39 -0.02 0.89 16 29 H 0.02 0.95 7.61 -2.39 -0.02 0.93 16 30 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 31 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.14 1.43 8.05 -2.39 -0.02 1.41 16 35 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.08 1.95 7.67 -2.39 -0.02 1.94 16 Total: -1.00 -74.52 295.60 2.63 -71.89 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 0.43 Total: 10.01 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 4.57 Total: 8.60 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -4.36 Total: -115.37 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.05 Total: -24.09 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -74.52 2.63 -71.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014533890.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.815 kcal (2) G-P(sol) polarization free energy of solvation -74.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds