Wall clock time and date at job start Sun Mar 29 2020 22:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.88915 * 322.56925 * 10 9 7 12 12 C 1.55156 * 111.00784 * 86.45040 * 10 9 7 13 13 C 1.54325 * 102.94629 * 153.57711 * 12 10 9 14 14 N 1.47018 * 107.26791 * 337.80770 * 13 12 10 15 15 C 1.34783 * 125.65051 * 178.98919 * 14 13 12 16 16 O 1.21276 * 120.00167 * 179.97438 * 15 14 13 17 17 C 1.50696 * 119.99574 * 359.97072 * 15 14 13 18 18 C 1.53001 * 109.47159 * 180.02562 * 17 15 14 19 19 C 1.53000 * 117.50082 * 243.62258 * 18 17 15 20 20 C 1.52998 * 117.49900 * 174.99998 * 18 17 15 21 21 C 1.47428 * 108.70653 * 358.94229 * 14 13 12 22 22 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 23 23 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 24 24 H 1.09006 * 110.71784 * 271.94057 * 12 10 9 25 25 H 1.08998 * 110.71789 * 35.21069 * 12 10 9 26 26 H 1.09001 * 109.88082 * 97.22397 * 13 12 10 27 27 H 1.08997 * 109.88174 * 218.23304 * 13 12 10 28 28 H 1.08998 * 109.47339 * 300.00559 * 17 15 14 29 29 H 1.08998 * 109.46968 * 60.00189 * 17 15 14 30 30 H 1.08997 * 115.54535 * 29.33153 * 18 17 15 31 31 H 1.09002 * 117.49931 * 0.02562 * 19 18 17 32 32 H 1.08996 * 117.49516 * 145.01932 * 19 18 17 33 33 H 1.09001 * 117.49631 * 214.97865 * 20 18 17 34 34 H 1.08999 * 117.49840 * 0.02562 * 20 18 17 35 35 H 1.09009 * 110.36455 * 265.29447 * 21 14 13 36 36 H 1.09000 * 110.36736 * 142.97060 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9531 -3.5888 -0.6198 12 6 2.4126 -4.0943 1.4441 13 6 2.5162 -5.6295 1.3252 14 7 1.7446 -6.0284 0.1391 15 6 1.6037 -7.2880 -0.3194 16 8 0.9403 -7.5014 -1.3119 17 6 2.2708 -8.4310 0.4013 18 6 1.9544 -9.7428 -0.3199 19 6 1.1456 -10.7924 0.4450 20 6 2.6382 -11.0125 0.1909 21 6 1.1493 -4.8226 -0.4652 22 1 -0.4850 -0.8401 -0.0004 23 1 0.3556 -2.3880 -0.0016 24 1 3.3661 -3.6662 1.7536 25 1 1.6196 -3.8139 2.1374 26 1 3.5592 -5.9224 1.2046 27 1 2.1001 -6.0993 2.2163 28 1 3.3493 -8.2738 0.4123 29 1 1.9004 -8.4805 1.4252 30 1 1.7843 -9.6598 -1.3934 31 1 0.8385 -10.5482 1.4619 32 1 0.4430 -11.4000 -0.1252 33 1 2.9175 -11.7652 -0.5465 34 1 3.3131 -10.9135 1.0410 35 1 0.1320 -4.6784 -0.1011 36 1 1.1566 -4.9000 -1.5525 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018399818.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:21 Heat of formation + Delta-G solvation = -1.377699 kcal Electronic energy + Delta-G solvation = -16695.770438 eV Core-core repulsion = 13987.800917 eV Total energy + Delta-G solvation = -2707.969521 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.95989 -37.87347 -36.79261 -34.44195 -31.73956 -29.79889 -29.47411 -27.22618 -23.59719 -22.95762 -22.57286 -20.95561 -20.24639 -19.05022 -17.51000 -17.10004 -16.08509 -15.99373 -14.95914 -14.57386 -14.34950 -14.09942 -13.70342 -13.31762 -12.91714 -12.64370 -12.45622 -12.04831 -11.76521 -11.71587 -11.55306 -11.05948 -10.72339 -10.68939 -10.54840 -10.30089 -10.19055 -10.05262 -9.69928 -9.25695 -8.98627 -8.48092 -7.14509 -6.17449 -3.19498 2.73426 3.06022 3.48606 3.53212 3.62825 3.67458 4.44815 4.53158 4.61252 4.72574 4.90142 4.95937 5.15897 5.20428 5.29459 5.40132 5.42954 5.44993 5.51480 5.56699 5.66917 5.70720 5.88532 5.90049 5.95727 6.12451 6.15566 6.27574 6.46747 6.51770 6.80420 7.67623 7.73765 8.27518 8.67912 9.12234 9.98803 10.12259 11.30559 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.069678 B = 0.004180 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.752855 B = 6696.441569 C = 6873.033324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.042 4.042 3 Si 1.084 2.916 4 H -0.295 1.295 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.336 4.336 8 H 0.067 0.933 9 N -0.727 5.727 10 C 0.177 3.823 11 H 0.064 0.936 12 C -0.154 4.154 13 C 0.101 3.899 14 N -0.615 5.615 15 C 0.527 3.473 16 O -0.545 6.545 17 C -0.105 4.105 18 C -0.139 4.139 19 C -0.179 4.179 20 C -0.181 4.181 21 C 0.098 3.902 22 H 0.256 0.744 23 H 0.369 0.631 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.118 0.882 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.509 -17.862 3.901 19.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.240 4.240 3 Si 0.915 3.085 4 H -0.222 1.222 5 H -0.221 1.221 6 H -0.213 1.213 7 C -0.467 4.467 8 H 0.085 0.915 9 N -0.369 5.369 10 C 0.065 3.935 11 H 0.082 0.918 12 C -0.195 4.195 13 C -0.022 4.022 14 N -0.349 5.349 15 C 0.316 3.684 16 O -0.423 6.423 17 C -0.145 4.145 18 C -0.158 4.158 19 C -0.216 4.216 20 C -0.218 4.218 21 C -0.025 4.025 22 H 0.067 0.933 23 H 0.203 0.797 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.136 0.864 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.210 -16.344 3.320 17.796 hybrid contribution -0.056 -1.692 0.233 1.709 sum 6.154 -18.036 3.553 19.385 Atomic orbital electron populations 1.70856 1.06089 1.28579 1.53022 1.25827 0.97023 1.01096 1.00041 0.83181 0.73898 0.75197 0.76271 1.22233 1.22067 1.21324 1.20042 0.92085 0.85433 1.49130 0.91499 1.42270 1.04858 1.00356 1.89383 1.21231 0.94146 0.85153 0.92982 0.91801 1.23391 1.02868 0.91387 1.01897 1.22096 0.95292 0.97464 0.87359 1.48482 1.51144 1.06254 1.29059 1.20205 0.81081 0.82507 0.84610 1.90680 1.41353 1.83692 1.26536 1.21182 1.01752 0.91796 0.99725 1.22071 1.04576 0.88535 1.00602 1.23027 0.94124 1.03076 1.01365 1.22994 0.95524 0.99819 1.03486 1.22514 0.97388 0.83815 0.98780 0.93255 0.79695 0.90607 0.90702 0.91785 0.92000 0.88603 0.88991 0.86389 0.88880 0.88785 0.88721 0.88800 0.91628 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.69 13.70 55.49 0.76 -27.93 16 2 C -0.04 -1.19 5.50 -17.43 -0.10 -1.29 16 3 Si 1.08 25.45 29.92 -169.99 -5.09 20.37 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.34 -9.19 9.98 -15.06 -0.15 -9.34 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.73 -17.73 5.28 -51.36 -0.27 -18.00 16 10 C 0.18 3.44 3.69 -65.79 -0.24 3.20 16 11 H 0.06 1.29 8.13 -51.93 -0.42 0.86 16 12 C -0.15 -2.50 6.65 -24.90 -0.17 -2.66 16 13 C 0.10 1.30 6.49 -3.07 -0.02 1.28 16 14 N -0.62 -9.47 3.33 -170.52 -0.57 -10.03 16 15 C 0.53 8.08 7.85 -10.98 -0.09 7.99 16 16 O -0.54 -10.37 15.82 5.56 0.09 -10.29 16 17 C -0.10 -1.13 5.17 -27.88 -0.14 -1.27 16 18 C -0.14 -1.50 5.41 -90.62 -0.49 -1.99 16 19 C -0.18 -1.65 10.18 -26.73 -0.27 -1.93 16 20 C -0.18 -1.50 10.25 -26.73 -0.27 -1.78 16 21 C 0.10 1.76 6.53 -2.53 -0.02 1.75 16 22 H 0.26 7.69 6.77 -40.82 -0.28 7.41 16 23 H 0.37 9.33 6.54 -40.82 -0.27 9.07 16 24 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.09 0.85 7.88 -51.93 -0.41 0.44 16 30 H 0.12 1.51 7.30 -51.93 -0.38 1.13 16 31 H 0.09 0.79 8.03 -51.93 -0.42 0.37 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 1.21 8.00 -51.92 -0.42 0.80 16 36 H 0.08 1.44 8.04 -51.93 -0.42 1.03 16 LS Contribution 300.71 15.07 4.53 4.53 Total: -1.00 -32.11 300.71 -8.09 -40.20 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -5.59 Total: 7.19 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -1.96 Total: -6.04 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.08 Total: -55.97 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -5.09 Total: 20.37 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.11 -8.09 -40.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018399818.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.826 kcal (2) G-P(sol) polarization free energy of solvation -32.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds