Wall clock time and date at job start Sun Mar 29 2020 22:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.88915 * 322.56925 * 10 9 7 12 12 C 1.55156 * 111.00784 * 86.45040 * 10 9 7 13 13 C 1.54325 * 102.94629 * 153.57711 * 12 10 9 14 14 N 1.47018 * 107.26791 * 337.80770 * 13 12 10 15 15 C 1.34783 * 125.65051 * 178.98919 * 14 13 12 16 16 O 1.21276 * 120.00167 * 179.97438 * 15 14 13 17 17 C 1.50696 * 119.99574 * 359.97072 * 15 14 13 18 18 C 1.53001 * 109.47159 * 180.02562 * 17 15 14 19 19 C 1.53000 * 117.50082 * 243.62258 * 18 17 15 20 20 C 1.52998 * 117.49900 * 174.99998 * 18 17 15 21 21 C 1.47428 * 108.70653 * 358.94229 * 14 13 12 22 22 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 23 23 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 24 24 H 1.09006 * 110.71784 * 271.94057 * 12 10 9 25 25 H 1.08998 * 110.71789 * 35.21069 * 12 10 9 26 26 H 1.09001 * 109.88082 * 97.22397 * 13 12 10 27 27 H 1.08997 * 109.88174 * 218.23304 * 13 12 10 28 28 H 1.08998 * 109.47339 * 300.00559 * 17 15 14 29 29 H 1.08998 * 109.46968 * 60.00189 * 17 15 14 30 30 H 1.08997 * 115.54535 * 29.33153 * 18 17 15 31 31 H 1.09002 * 117.49931 * 0.02562 * 19 18 17 32 32 H 1.08996 * 117.49516 * 145.01932 * 19 18 17 33 33 H 1.09001 * 117.49631 * 214.97865 * 20 18 17 34 34 H 1.08999 * 117.49840 * 0.02562 * 20 18 17 35 35 H 1.09009 * 110.36455 * 265.29447 * 21 14 13 36 36 H 1.09000 * 110.36736 * 142.97060 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9531 -3.5888 -0.6198 12 6 2.4126 -4.0943 1.4441 13 6 2.5162 -5.6295 1.3252 14 7 1.7446 -6.0284 0.1391 15 6 1.6037 -7.2880 -0.3194 16 8 0.9403 -7.5014 -1.3119 17 6 2.2708 -8.4310 0.4013 18 6 1.9544 -9.7428 -0.3199 19 6 1.1456 -10.7924 0.4450 20 6 2.6382 -11.0125 0.1909 21 6 1.1493 -4.8226 -0.4652 22 1 -0.4850 -0.8401 -0.0004 23 1 0.3556 -2.3880 -0.0016 24 1 3.3661 -3.6662 1.7536 25 1 1.6196 -3.8139 2.1374 26 1 3.5592 -5.9224 1.2046 27 1 2.1001 -6.0993 2.2163 28 1 3.3493 -8.2738 0.4123 29 1 1.9004 -8.4805 1.4252 30 1 1.7843 -9.6598 -1.3934 31 1 0.8385 -10.5482 1.4619 32 1 0.4430 -11.4000 -0.1252 33 1 2.9175 -11.7652 -0.5465 34 1 3.3131 -10.9135 1.0410 35 1 0.1320 -4.6784 -0.1011 36 1 1.1566 -4.9000 -1.5525 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018399818.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:20 Heat of formation + Delta-G solvation = -22.159101 kcal Electronic energy + Delta-G solvation = -16696.671588 eV Core-core repulsion = 13987.800917 eV Total energy + Delta-G solvation = -2708.870670 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.19221 -39.06883 -37.80454 -36.27163 -33.43705 -31.18386 -30.68164 -28.70742 -25.55249 -24.31201 -23.21932 -21.99236 -21.63623 -20.18608 -19.48315 -18.28276 -17.40553 -17.08198 -16.66818 -15.90965 -15.52634 -15.43322 -14.98800 -14.66024 -14.44204 -13.82787 -13.72594 -13.37626 -13.17932 -12.75392 -12.55281 -12.41641 -12.36354 -12.29852 -11.86787 -11.76003 -11.32067 -11.31671 -11.02732 -10.95188 -10.78717 -9.74908 -9.18006 -8.40878 -5.37057 1.56249 1.59968 1.70664 1.83991 1.86796 2.71649 2.90898 3.34150 3.47369 3.58218 3.75597 3.80003 3.94204 4.03882 4.12455 4.16870 4.25697 4.38256 4.47617 4.62454 4.63258 4.70869 4.79026 4.80732 4.90885 5.04152 5.14354 5.16673 5.27605 5.33208 5.34843 5.59412 6.46325 6.49533 7.03457 7.08238 7.93121 8.05126 9.10661 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.069678 B = 0.004180 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.752855 B = 6696.441569 C = 6873.033324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.104 4.104 3 Si 1.132 2.868 4 H -0.282 1.282 5 H -0.272 1.272 6 H -0.297 1.297 7 C -0.330 4.330 8 H 0.073 0.927 9 N -0.743 5.743 10 C 0.169 3.831 11 H 0.058 0.942 12 C -0.144 4.144 13 C 0.108 3.892 14 N -0.616 5.616 15 C 0.520 3.480 16 O -0.592 6.592 17 C -0.091 4.091 18 C -0.165 4.165 19 C -0.184 4.184 20 C -0.158 4.158 21 C 0.107 3.893 22 H 0.244 0.756 23 H 0.360 0.640 24 H 0.085 0.915 25 H 0.060 0.940 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.122 0.878 29 H 0.118 0.882 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.054 0.946 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.823 -19.357 5.667 22.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.295 4.295 3 Si 0.956 3.044 4 H -0.209 1.209 5 H -0.197 1.197 6 H -0.223 1.223 7 C -0.461 4.461 8 H 0.091 0.909 9 N -0.384 5.384 10 C 0.059 3.941 11 H 0.076 0.924 12 C -0.185 4.185 13 C -0.014 4.014 14 N -0.349 5.349 15 C 0.312 3.688 16 O -0.473 6.473 17 C -0.130 4.130 18 C -0.184 4.184 19 C -0.221 4.221 20 C -0.195 4.195 21 C -0.018 4.018 22 H 0.054 0.946 23 H 0.192 0.808 24 H 0.104 0.896 25 H 0.079 0.921 26 H 0.116 0.884 27 H 0.111 0.889 28 H 0.140 0.860 29 H 0.136 0.864 30 H 0.106 0.894 31 H 0.123 0.877 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.133 0.867 35 H 0.072 0.928 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.578 -17.903 5.115 20.501 hybrid contribution -0.772 -1.327 -0.365 1.578 sum 7.806 -19.230 4.750 21.291 Atomic orbital electron populations 1.70969 1.07332 1.27941 1.56141 1.27248 0.97058 1.04795 1.00383 0.82574 0.73522 0.71353 0.76936 1.20877 1.19671 1.22323 1.20384 0.92494 0.86479 1.46765 0.90940 1.42443 1.04644 1.01494 1.89849 1.21391 0.93592 0.83722 0.95394 0.92396 1.23188 1.02708 0.94154 0.98432 1.22235 0.97106 0.94734 0.87335 1.48584 1.51187 1.05549 1.29625 1.21170 0.80385 0.83110 0.84160 1.90663 1.43489 1.84326 1.28821 1.21222 1.02699 0.89167 0.99955 1.21988 1.07318 0.89780 0.99284 1.23136 0.95042 1.02294 1.01595 1.23093 0.95037 0.97642 1.03714 1.22175 0.96823 0.84981 0.97795 0.94571 0.80764 0.89639 0.92083 0.88427 0.88870 0.85997 0.86440 0.89421 0.87710 0.89177 0.88134 0.86671 0.92770 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.97 13.70 21.65 0.30 -60.67 16 2 C -0.10 -5.94 5.50 84.86 0.47 -5.48 16 3 Si 1.13 51.11 29.92 68.60 2.05 53.17 16 4 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 7 C -0.33 -18.10 9.98 84.03 0.84 -17.26 16 8 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 9 N -0.74 -36.92 5.28 -316.39 -1.67 -38.59 16 10 C 0.17 6.55 3.69 46.38 0.17 6.72 16 11 H 0.06 2.31 8.13 -2.39 -0.02 2.29 16 12 C -0.14 -4.38 6.65 31.78 0.21 -4.17 16 13 C 0.11 2.37 6.49 86.73 0.56 2.93 16 14 N -0.62 -17.94 3.33 -811.79 -2.70 -20.64 16 15 C 0.52 15.26 7.85 87.65 0.69 15.95 16 16 O -0.59 -22.95 15.82 -3.02 -0.05 -23.00 16 17 C -0.09 -1.66 5.17 29.85 0.15 -1.51 16 18 C -0.16 -3.26 5.41 -10.79 -0.06 -3.31 16 19 C -0.18 -2.98 10.18 30.59 0.31 -2.67 16 20 C -0.16 -2.10 10.25 30.59 0.31 -1.79 16 21 C 0.11 3.89 6.53 86.85 0.57 4.46 16 22 H 0.24 15.23 6.77 -92.71 -0.63 14.61 16 23 H 0.36 18.96 6.54 -92.71 -0.61 18.35 16 24 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 25 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.12 1.59 7.88 -2.39 -0.02 1.57 16 30 H 0.09 2.27 7.30 -2.39 -0.02 2.25 16 31 H 0.10 1.44 8.03 -2.39 -0.02 1.42 16 32 H 0.09 1.49 8.14 -2.39 -0.02 1.48 16 33 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.05 2.08 8.00 -2.38 -0.02 2.06 16 36 H 0.06 2.25 8.04 -2.39 -0.02 2.23 16 Total: -1.00 -71.95 300.71 2.75 -69.19 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 0.59 Total: 26.68 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 4.23 Total: -6.13 kcal Atomic # 7 Polarization: -115.83 SS G_CDS: -4.07 Total: -119.90 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.05 Total: -23.00 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 2.05 Total: 53.17 kcal Total: -71.95 2.75 -69.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018399818.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.034 kcal (2) G-P(sol) polarization free energy of solvation -71.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds