Wall clock time and date at job start Sun Mar 29 2020 22:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.50698 * 119.99875 * 2 1 4 4 C 1.32993 * 120.00182 * 180.02562 * 2 1 3 5 5 C 1.47101 * 119.99882 * 352.83738 * 4 2 1 6 6 O 1.21612 * 120.00012 * 354.00810 * 5 4 2 7 7 N 1.34775 * 120.00270 * 174.00438 * 5 4 2 8 8 C 1.47022 * 125.64548 * 359.69105 * 7 5 4 9 9 C 1.54321 * 107.27194 * 179.20693 * 8 7 5 10 10 C 1.55154 * 102.94295 * 337.80409 * 9 8 7 11 11 H 1.08996 * 111.03969 * 277.41919 * 10 9 8 12 12 N 1.46497 * 111.00481 * 153.57641 * 10 9 8 13 13 C 1.36939 * 120.00232 * 161.35301 * 12 10 9 14 14 H 1.08002 * 119.99604 * 359.97438 * 13 12 10 15 15 C 1.38808 * 120.00276 * 179.97438 * 13 12 10 16 16 N 1.31612 * 120.00214 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00051 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47317 * 89.99778 * 17 15 13 19 19 H 1.48494 * 109.47278 * 209.99938 * 17 15 13 20 20 H 1.48501 * 109.47040 * 330.00076 * 17 15 13 21 21 C 1.47420 * 125.65382 * 179.97438 * 7 5 4 22 22 H 1.08997 * 109.46805 * 264.39067 * 1 2 3 23 23 H 1.08994 * 109.46874 * 24.38695 * 1 2 3 24 24 H 1.08995 * 109.46876 * 144.38746 * 1 2 3 25 25 H 1.09003 * 109.47470 * 270.00022 * 3 2 1 26 26 H 1.09000 * 109.47609 * 30.00332 * 3 2 1 27 27 H 1.09005 * 109.47414 * 150.00191 * 3 2 1 28 28 H 1.07996 * 120.00327 * 172.83759 * 4 2 1 29 29 H 1.09007 * 109.88390 * 298.62347 * 8 7 5 30 30 H 1.09004 * 109.88616 * 59.78521 * 8 7 5 31 31 H 1.09002 * 110.71717 * 219.44042 * 9 8 7 32 32 H 1.08996 * 110.87441 * 96.24306 * 9 8 7 33 33 H 0.96999 * 119.99936 * 341.35007 * 12 10 9 34 34 H 0.97002 * 120.00741 * 179.97438 * 16 15 13 35 35 H 1.08995 * 110.36624 * 322.70626 * 21 7 5 36 36 H 1.09001 * 110.36408 * 84.91106 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4452 -2.4208 0.1578 6 8 0.2530 -2.4128 0.3978 7 7 2.1003 -3.5923 0.0367 8 6 3.5326 -3.7467 -0.2570 9 6 3.8351 -5.2598 -0.2804 10 6 2.6764 -5.8588 0.5598 11 1 2.8908 -5.7912 1.6263 12 7 2.4056 -7.2442 0.1682 13 6 1.7098 -8.0702 1.0101 14 1 1.3611 -7.7004 1.9630 15 6 1.4528 -9.3828 0.6388 16 7 0.7836 -10.1765 1.4478 17 14 2.0566 -10.0227 -1.0090 18 1 3.4170 -10.5961 -0.8490 19 1 1.1309 -11.0744 -1.5010 20 1 2.1019 -8.9062 -1.9871 21 6 1.4984 -4.9313 0.1710 22 1 -0.3633 -0.1004 1.0227 23 1 -0.3633 0.9359 -0.4243 24 1 -0.3633 -0.8354 -0.5984 25 1 2.4422 1.6198 -1.0277 26 1 1.6715 2.0648 0.5139 27 1 3.2130 1.1748 0.5138 28 1 3.2457 -1.1554 -0.1171 29 1 3.7613 -3.3079 -1.2283 30 1 4.1246 -3.2622 0.5195 31 1 4.7978 -5.4678 0.1867 32 1 3.8115 -5.6448 -1.2998 33 1 2.7191 -7.5765 -0.6875 34 1 0.6036 -11.0937 1.1882 35 1 0.7416 -4.9301 0.9554 36 1 1.0614 -5.2475 -0.7762 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018450372.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:20 Heat of formation + Delta-G solvation = -4.246554 kcal Electronic energy + Delta-G solvation = -16809.155739 eV Core-core repulsion = 14101.061815 eV Total energy + Delta-G solvation = -2708.093924 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.85605 -37.66874 -35.32109 -34.24169 -31.69162 -29.97896 -28.75646 -27.86155 -27.07801 -23.89696 -22.42819 -20.64677 -19.81961 -18.20762 -17.48236 -16.96312 -16.04992 -15.03994 -14.67771 -14.41966 -14.20283 -13.65172 -13.59740 -13.23681 -12.85541 -12.67195 -12.57428 -12.33066 -12.16884 -12.01692 -11.65988 -11.50056 -11.22362 -10.91026 -10.75616 -10.49354 -10.07548 -9.64153 -9.41362 -9.17153 -9.02603 -8.27383 -7.37462 -5.82061 -3.20285 1.37112 3.28391 3.34206 3.36310 3.42879 3.45115 4.53956 4.57284 4.73081 4.82798 5.02983 5.12899 5.19232 5.26361 5.34223 5.40940 5.55335 5.59905 5.63694 5.69454 5.81143 5.85350 5.89521 6.04094 6.13904 6.28666 6.41338 6.47272 6.52612 6.65382 6.80421 7.83551 7.92766 8.36315 8.44821 9.13047 9.84802 10.02741 11.35736 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.047494 B = 0.004886 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.411688 B = 5728.951275 C = 6031.000130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.041 4.041 3 C -0.125 4.125 4 C -0.227 4.227 5 C 0.554 3.446 6 O -0.544 6.544 7 N -0.613 5.613 8 C 0.107 3.893 9 C -0.144 4.144 10 C 0.177 3.823 11 H 0.073 0.927 12 N -0.737 5.737 13 C -0.253 4.253 14 H 0.092 0.908 15 C 0.009 3.991 16 N -0.929 5.929 17 Si 0.885 3.115 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.277 1.277 21 C 0.084 3.916 22 H 0.078 0.922 23 H 0.052 0.948 24 H 0.089 0.911 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.123 0.877 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.364 0.636 34 H 0.261 0.739 35 H 0.075 0.925 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.107 20.162 -5.155 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.043 4.043 3 C -0.181 4.181 4 C -0.248 4.248 5 C 0.346 3.654 6 O -0.425 6.425 7 N -0.347 5.347 8 C -0.017 4.017 9 C -0.183 4.183 10 C 0.065 3.935 11 H 0.090 0.910 12 N -0.378 5.378 13 C -0.382 4.382 14 H 0.110 0.890 15 C -0.187 4.187 16 N -0.576 5.576 17 Si 0.715 3.285 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.203 1.203 21 C -0.041 4.041 22 H 0.097 0.903 23 H 0.071 0.929 24 H 0.108 0.892 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.141 0.859 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.197 0.803 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.317 20.069 -4.814 21.583 hybrid contribution 0.498 -0.635 -1.227 1.468 sum 6.814 19.434 -6.041 21.462 Atomic orbital electron populations 1.21140 0.90929 1.02230 1.03692 1.22535 0.96914 0.94339 0.90489 1.20979 1.00029 0.94458 1.02667 1.22414 1.00134 0.92044 1.10226 1.18208 0.86505 0.83217 0.77474 1.90753 1.15010 1.87093 1.49621 1.48433 1.10023 1.06347 1.69899 1.21961 0.81965 0.97540 1.00184 1.22936 1.00330 0.93256 1.01752 1.21278 0.90476 0.84247 0.97492 0.90953 1.42649 1.67457 1.07151 1.20583 1.19087 1.27565 0.91828 0.99746 0.88980 1.24680 0.99939 0.96263 0.97836 1.69697 1.44480 1.06864 1.36589 0.86554 0.78496 0.78602 0.84884 1.20942 1.21613 1.20294 1.23268 0.98911 0.80142 1.01813 0.90349 0.92923 0.89216 0.90642 0.90981 0.91203 0.85883 0.91891 0.91600 0.89958 0.90714 0.80258 0.92902 0.90694 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 8.47 36.01 0.30 -1.16 16 2 C -0.04 -0.44 6.11 -101.17 -0.62 -1.06 16 3 C -0.12 -0.90 10.01 36.00 0.36 -0.54 16 4 C -0.23 -2.79 9.13 -37.81 -0.35 -3.13 16 5 C 0.55 9.08 7.65 -12.67 -0.10 8.98 16 6 O -0.54 -10.61 13.54 5.27 0.07 -10.54 16 7 N -0.61 -9.83 3.33 -171.93 -0.57 -10.40 16 8 C 0.11 1.32 6.08 -3.07 -0.02 1.31 16 9 C -0.14 -2.01 6.58 -24.90 -0.16 -2.18 16 10 C 0.18 3.31 3.68 -65.80 -0.24 3.06 16 11 H 0.07 1.40 8.13 -51.93 -0.42 0.98 16 12 N -0.74 -16.94 5.08 -51.37 -0.26 -17.20 16 13 C -0.25 -7.03 10.47 -15.06 -0.16 -7.19 16 14 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 15 C 0.01 0.27 5.50 -17.44 -0.10 0.17 16 16 N -0.93 -29.01 13.97 55.49 0.78 -28.23 16 17 Si 0.88 21.70 27.74 -169.99 -4.71 16.98 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 21 C 0.08 1.59 6.60 -2.54 -0.02 1.57 16 22 H 0.08 0.99 8.04 -51.93 -0.42 0.57 16 23 H 0.05 0.49 8.09 -51.93 -0.42 0.07 16 24 H 0.09 1.30 6.14 -51.93 -0.32 0.98 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 27 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 28 H 0.12 1.20 7.39 -52.49 -0.39 0.82 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.03 7.99 -51.93 -0.42 0.62 16 33 H 0.36 8.13 5.57 -40.82 -0.23 7.90 16 34 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 35 H 0.07 1.58 8.04 -51.93 -0.42 1.16 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 297.29 15.07 4.48 4.48 Total: -1.00 -32.59 297.29 -6.88 -39.47 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -5.57 Total: 5.61 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -1.09 Total: -0.16 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.06 Total: -55.83 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.07 Total: -10.54 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.98 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.59 -6.88 -39.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018450372.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.225 kcal (2) G-P(sol) polarization free energy of solvation -32.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds