Wall clock time and date at job start Sun Mar 29 2020 22:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.50698 * 119.99875 * 2 1 4 4 C 1.32993 * 120.00182 * 180.02562 * 2 1 3 5 5 C 1.47101 * 119.99882 * 352.83738 * 4 2 1 6 6 O 1.21612 * 120.00012 * 354.00810 * 5 4 2 7 7 N 1.34775 * 120.00270 * 174.00438 * 5 4 2 8 8 C 1.47022 * 125.64548 * 359.69105 * 7 5 4 9 9 C 1.54321 * 107.27194 * 179.20693 * 8 7 5 10 10 C 1.55154 * 102.94295 * 337.80409 * 9 8 7 11 11 H 1.08996 * 111.03969 * 277.41919 * 10 9 8 12 12 N 1.46497 * 111.00481 * 153.57641 * 10 9 8 13 13 C 1.36939 * 120.00232 * 161.35301 * 12 10 9 14 14 H 1.08002 * 119.99604 * 359.97438 * 13 12 10 15 15 C 1.38808 * 120.00276 * 179.97438 * 13 12 10 16 16 N 1.31612 * 120.00214 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00051 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47317 * 89.99778 * 17 15 13 19 19 H 1.48494 * 109.47278 * 209.99938 * 17 15 13 20 20 H 1.48501 * 109.47040 * 330.00076 * 17 15 13 21 21 C 1.47420 * 125.65382 * 179.97438 * 7 5 4 22 22 H 1.08997 * 109.46805 * 264.39067 * 1 2 3 23 23 H 1.08994 * 109.46874 * 24.38695 * 1 2 3 24 24 H 1.08995 * 109.46876 * 144.38746 * 1 2 3 25 25 H 1.09003 * 109.47470 * 270.00022 * 3 2 1 26 26 H 1.09000 * 109.47609 * 30.00332 * 3 2 1 27 27 H 1.09005 * 109.47414 * 150.00191 * 3 2 1 28 28 H 1.07996 * 120.00327 * 172.83759 * 4 2 1 29 29 H 1.09007 * 109.88390 * 298.62347 * 8 7 5 30 30 H 1.09004 * 109.88616 * 59.78521 * 8 7 5 31 31 H 1.09002 * 110.71717 * 219.44042 * 9 8 7 32 32 H 1.08996 * 110.87441 * 96.24306 * 9 8 7 33 33 H 0.96999 * 119.99936 * 341.35007 * 12 10 9 34 34 H 0.97002 * 120.00741 * 179.97438 * 16 15 13 35 35 H 1.08995 * 110.36624 * 322.70626 * 21 7 5 36 36 H 1.09001 * 110.36408 * 84.91106 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4452 -2.4208 0.1578 6 8 0.2530 -2.4128 0.3978 7 7 2.1003 -3.5923 0.0367 8 6 3.5326 -3.7467 -0.2570 9 6 3.8351 -5.2598 -0.2804 10 6 2.6764 -5.8588 0.5598 11 1 2.8908 -5.7912 1.6263 12 7 2.4056 -7.2442 0.1682 13 6 1.7098 -8.0702 1.0101 14 1 1.3611 -7.7004 1.9630 15 6 1.4528 -9.3828 0.6388 16 7 0.7836 -10.1765 1.4478 17 14 2.0566 -10.0227 -1.0090 18 1 3.4170 -10.5961 -0.8490 19 1 1.1309 -11.0744 -1.5010 20 1 2.1019 -8.9062 -1.9871 21 6 1.4984 -4.9313 0.1710 22 1 -0.3633 -0.1004 1.0227 23 1 -0.3633 0.9359 -0.4243 24 1 -0.3633 -0.8354 -0.5984 25 1 2.4422 1.6198 -1.0277 26 1 1.6715 2.0648 0.5139 27 1 3.2130 1.1748 0.5138 28 1 3.2457 -1.1554 -0.1171 29 1 3.7613 -3.3079 -1.2283 30 1 4.1246 -3.2622 0.5195 31 1 4.7978 -5.4678 0.1867 32 1 3.8115 -5.6448 -1.2998 33 1 2.7191 -7.5765 -0.6875 34 1 0.6036 -11.0937 1.1882 35 1 0.7416 -4.9301 0.9554 36 1 1.0614 -5.2475 -0.7762 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018450372.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:19 Heat of formation + Delta-G solvation = -26.883227 kcal Electronic energy + Delta-G solvation = -16810.137339 eV Core-core repulsion = 14101.061815 eV Total energy + Delta-G solvation = -2709.075524 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.11286 -38.99757 -36.33738 -35.98313 -33.61408 -31.49507 -29.95637 -28.63291 -28.32349 -25.62348 -23.89104 -22.03848 -21.10265 -19.88761 -18.87985 -18.18045 -17.46038 -16.37448 -16.20874 -15.67518 -15.63739 -14.84333 -14.79002 -14.57574 -14.36832 -13.95117 -13.90855 -13.47973 -13.23787 -13.17090 -12.96155 -12.72382 -12.48688 -12.41908 -12.20018 -12.09035 -11.86404 -11.61358 -11.06118 -10.63946 -10.11571 -9.59257 -9.35013 -8.05540 -5.42348 0.41085 1.37670 1.42578 1.49311 2.05828 2.29387 2.46824 3.23665 3.47867 3.59247 3.83995 3.94365 4.01729 4.20827 4.30101 4.34609 4.48510 4.58497 4.69105 4.71601 4.79156 4.84379 4.92457 4.98269 5.01058 5.15254 5.18891 5.28421 5.36263 5.54197 5.68951 5.73595 6.18035 6.63342 7.03053 7.20785 7.75740 7.96688 9.15833 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.047494 B = 0.004886 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.411688 B = 5728.951275 C = 6031.000130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.027 4.027 3 C -0.121 4.121 4 C -0.241 4.241 5 C 0.541 3.459 6 O -0.592 6.592 7 N -0.616 5.616 8 C 0.107 3.893 9 C -0.130 4.130 10 C 0.168 3.832 11 H 0.060 0.940 12 N -0.738 5.738 13 C -0.242 4.242 14 H 0.052 0.948 15 C -0.061 4.061 16 N -0.983 5.983 17 Si 0.961 3.039 18 H -0.271 1.271 19 H -0.298 1.298 20 H -0.250 1.250 21 C 0.092 3.908 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.057 0.943 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.158 0.842 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.371 0.629 34 H 0.259 0.741 35 H 0.035 0.965 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.153 22.678 -7.331 25.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.029 4.029 3 C -0.177 4.177 4 C -0.262 4.262 5 C 0.335 3.665 6 O -0.476 6.476 7 N -0.349 5.349 8 C -0.015 4.015 9 C -0.168 4.168 10 C 0.057 3.943 11 H 0.078 0.922 12 N -0.380 5.380 13 C -0.373 4.373 14 H 0.070 0.930 15 C -0.253 4.253 16 N -0.633 5.633 17 Si 0.787 3.213 18 H -0.196 1.196 19 H -0.225 1.225 20 H -0.174 1.174 21 C -0.034 4.034 22 H 0.082 0.918 23 H 0.099 0.901 24 H 0.076 0.924 25 H 0.113 0.887 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.175 0.825 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.126 0.874 32 H 0.101 0.899 33 H 0.206 0.794 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.422 22.652 -7.008 25.515 hybrid contribution -0.549 -1.293 -0.452 1.476 sum 8.873 21.359 -7.460 24.302 Atomic orbital electron populations 1.21102 0.92408 1.02357 1.02423 1.22921 0.96278 0.95938 0.87771 1.21055 1.00250 0.92138 1.04224 1.22426 1.01417 0.89858 1.12467 1.19092 0.86313 0.84531 0.76537 1.90736 1.17268 1.87809 1.51762 1.48511 1.11639 1.04911 1.69863 1.22241 0.79604 0.96679 1.02953 1.22906 0.98943 0.93764 1.01181 1.21429 0.92608 0.82252 0.97973 0.92207 1.42557 1.66964 1.08349 1.20159 1.19008 1.26882 0.92513 0.98902 0.93025 1.25582 1.00738 0.96563 1.02428 1.69898 1.46830 1.07260 1.39291 0.85339 0.77893 0.78205 0.79886 1.19630 1.22474 1.17406 1.22846 0.98283 0.82681 0.99600 0.91778 0.90091 0.92382 0.88696 0.89837 0.89651 0.82493 0.88716 0.88761 0.87420 0.89851 0.79422 0.93183 0.94635 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.47 71.24 0.60 -2.32 16 2 C -0.03 -0.52 6.11 -17.61 -0.11 -0.63 16 3 C -0.12 -1.20 10.01 71.24 0.71 -0.49 16 4 C -0.24 -5.28 9.13 23.43 0.21 -5.07 16 5 C 0.54 17.59 7.65 86.57 0.66 18.25 16 6 O -0.59 -24.23 13.54 -4.07 -0.06 -24.28 16 7 N -0.62 -19.22 3.33 -816.11 -2.71 -21.93 16 8 C 0.11 2.23 6.08 86.73 0.53 2.76 16 9 C -0.13 -3.18 6.58 31.78 0.21 -2.97 16 10 C 0.17 6.23 3.68 46.38 0.17 6.40 16 11 H 0.06 2.37 8.13 -2.39 -0.02 2.35 16 12 N -0.74 -33.81 5.08 -316.42 -1.61 -35.41 16 13 C -0.24 -13.93 10.47 84.03 0.88 -13.05 16 14 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 15 C -0.06 -3.63 5.50 84.86 0.47 -3.17 16 16 N -0.98 -63.69 13.97 21.65 0.30 -63.39 16 17 Si 0.96 44.86 27.74 68.60 1.90 46.76 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 20 H -0.25 -10.41 6.52 99.48 0.65 -9.76 16 21 C 0.09 3.61 6.60 86.85 0.57 4.18 16 22 H 0.06 1.66 8.04 -2.39 -0.02 1.64 16 23 H 0.08 1.35 8.09 -2.39 -0.02 1.33 16 24 H 0.06 1.74 6.14 -2.39 -0.01 1.72 16 25 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.08 0.69 8.12 -2.39 -0.02 0.67 16 27 H 0.08 0.66 8.07 -2.38 -0.02 0.64 16 28 H 0.16 2.30 7.39 -2.91 -0.02 2.28 16 29 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.09 1.50 8.13 -2.38 -0.02 1.48 16 31 H 0.11 2.15 8.14 -2.39 -0.02 2.14 16 32 H 0.08 1.95 7.99 -2.39 -0.02 1.93 16 33 H 0.37 15.86 5.57 -92.71 -0.52 15.34 16 34 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 35 H 0.03 1.62 8.04 -2.39 -0.02 1.60 16 36 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -76.47 297.29 3.22 -73.25 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.48 Total: 21.09 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 4.91 Total: 3.91 kcal Atomic # 7 Polarization: -116.71 SS G_CDS: -4.02 Total: -120.73 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.06 Total: -24.28 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.90 Total: 46.76 kcal Total: -76.47 3.22 -73.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018450372.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.367 kcal (2) G-P(sol) polarization free energy of solvation -76.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds