Wall clock time and date at job start Sun Mar 29 2020 22:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32996 * 119.99830 * 2 1 4 4 C 1.50701 * 119.99830 * 180.02562 * 3 2 1 5 5 C 1.47105 * 120.00090 * 359.97438 * 3 2 1 6 6 O 1.21612 * 119.99930 * 263.36071 * 5 3 2 7 7 N 1.34773 * 119.99734 * 83.36276 * 5 3 2 8 8 C 1.47024 * 125.64941 * 355.40203 * 7 5 3 9 9 C 1.54325 * 107.26861 * 178.91966 * 8 7 5 10 10 C 1.55160 * 102.94448 * 337.80669 * 9 8 7 11 11 H 1.09001 * 110.99887 * 277.38946 * 10 9 8 12 12 N 1.46501 * 111.00420 * 153.57697 * 10 9 8 13 13 C 1.36929 * 119.99917 * 154.99952 * 12 10 9 14 14 H 1.08003 * 119.99977 * 359.97438 * 13 12 10 15 15 C 1.38813 * 120.00176 * 180.02562 * 13 12 10 16 16 N 1.31612 * 119.99899 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00062 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47174 * 269.99778 * 17 15 13 19 19 H 1.48503 * 109.47252 * 30.00090 * 17 15 13 20 20 H 1.48505 * 109.46999 * 149.99833 * 17 15 13 21 21 C 1.47429 * 125.64737 * 175.37436 * 7 5 3 22 22 H 1.08999 * 109.46975 * 60.00429 * 1 2 3 23 23 H 1.08998 * 109.47287 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47303 * 300.00336 * 1 2 3 25 25 H 1.07998 * 120.00305 * 179.97438 * 2 1 3 26 26 H 1.08995 * 109.46832 * 275.01853 * 4 3 2 27 27 H 1.08998 * 109.47277 * 35.02540 * 4 3 2 28 28 H 1.09005 * 109.46947 * 155.02274 * 4 3 2 29 29 H 1.08995 * 109.88024 * 59.50492 * 8 7 5 30 30 H 1.08995 * 110.00686 * 298.40578 * 8 7 5 31 31 H 1.08997 * 110.71896 * 219.44435 * 9 8 7 32 32 H 1.09000 * 110.87502 * 96.24132 * 9 8 7 33 33 H 0.96997 * 119.99786 * 335.00479 * 12 10 9 34 34 H 0.97002 * 120.00061 * 0.02562 * 16 15 13 35 35 H 1.09004 * 110.36312 * 85.30817 * 21 7 5 36 36 H 1.08998 * 110.36679 * 322.99512 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1518 -0.0006 5 6 1.4364 2.4258 -0.0006 6 8 1.2382 3.0130 -1.0469 7 7 0.9822 2.9421 1.1585 8 6 1.0669 2.2954 2.4762 9 6 0.4460 3.2654 3.5034 10 6 0.5587 4.6410 2.7946 11 1 1.5517 5.0699 2.9296 12 7 -0.4770 5.5624 3.2685 13 6 -0.2775 6.9149 3.1916 14 1 0.6436 7.3024 2.7819 15 6 -1.2587 7.7879 3.6412 16 7 -2.3805 7.3156 4.1418 17 14 -0.9862 9.6330 3.5369 18 1 -0.3401 10.1093 4.7863 19 1 -0.1092 9.9392 2.3783 20 1 -2.2927 10.3173 3.3633 21 6 0.3187 4.2492 1.3152 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 2.0470 -0.9353 0.0004 26 1 4.0426 1.0617 1.0230 27 1 4.0421 0.3104 -0.5907 28 1 4.0421 2.0835 -0.4345 29 1 2.1099 2.1051 2.7293 30 1 0.5105 1.3581 2.4680 31 1 1.0175 3.2619 4.4315 32 1 -0.5974 3.0140 3.6937 33 1 -1.3041 5.2143 3.6369 34 1 -2.5216 6.3575 4.1970 35 1 -0.7491 4.1590 1.1151 36 1 0.7692 4.9856 0.6498 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018693457.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:04 Heat of formation + Delta-G solvation = -11.195898 kcal Electronic energy + Delta-G solvation = -17124.863419 eV Core-core repulsion = 14416.468149 eV Total energy + Delta-G solvation = -2708.395270 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.97604 -37.45339 -35.31987 -34.37243 -31.50972 -30.36399 -29.54540 -27.57919 -25.10054 -23.97021 -22.88890 -21.35651 -20.23162 -18.18899 -17.49195 -16.40909 -15.97893 -15.30473 -14.90863 -14.59862 -13.78891 -13.70376 -13.46092 -13.29166 -13.18168 -12.99033 -12.70746 -12.32381 -12.13064 -11.85660 -11.64832 -11.42784 -11.16744 -10.75707 -10.62833 -10.31806 -10.04272 -9.73159 -9.25055 -9.05475 -9.02336 -8.39543 -7.16850 -6.18191 -3.20381 1.68530 2.74500 3.26083 3.50230 3.54749 3.68817 4.50925 4.61512 4.75550 4.87159 5.00987 5.14978 5.23006 5.30752 5.38075 5.47107 5.51952 5.54549 5.65486 5.69101 5.77359 5.85571 5.88258 5.95825 6.15498 6.24054 6.28340 6.46493 6.46964 6.55684 6.77660 7.73260 7.74784 8.31279 8.67592 9.11093 9.97677 10.10483 11.29720 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.041427 B = 0.005251 C = 0.005087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.717975 B = 5330.981884 C = 5502.890282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.122 4.122 3 C -0.161 4.161 4 C -0.103 4.103 5 C 0.567 3.433 6 O -0.543 6.543 7 N -0.608 5.608 8 C 0.107 3.893 9 C -0.143 4.143 10 C 0.178 3.822 11 H 0.069 0.931 12 N -0.722 5.722 13 C -0.340 4.340 14 H 0.067 0.933 15 C -0.040 4.040 16 N -0.940 5.940 17 Si 1.083 2.917 18 H -0.294 1.294 19 H -0.293 1.293 20 H -0.287 1.287 21 C 0.082 3.918 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.123 0.877 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.370 0.630 34 H 0.256 0.744 35 H 0.064 0.936 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.155 -15.558 -3.545 18.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.140 4.140 3 C -0.164 4.164 4 C -0.160 4.160 5 C 0.356 3.644 6 O -0.421 6.421 7 N -0.342 5.342 8 C -0.016 4.016 9 C -0.182 4.182 10 C 0.066 3.934 11 H 0.087 0.913 12 N -0.363 5.363 13 C -0.471 4.471 14 H 0.085 0.915 15 C -0.238 4.238 16 N -0.585 5.585 17 Si 0.913 3.087 18 H -0.222 1.222 19 H -0.220 1.220 20 H -0.213 1.213 21 C -0.044 4.044 22 H 0.089 0.911 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.141 0.859 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.204 0.796 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.568 -13.631 -3.914 16.569 hybrid contribution 0.449 -1.728 -0.261 1.805 sum 9.017 -15.360 -4.175 18.294 Atomic orbital electron populations 1.21000 0.92771 1.02666 1.02900 1.23247 0.96292 0.96642 0.97855 1.21515 0.96915 0.93058 1.04902 1.20644 0.89854 1.03152 1.02330 1.18150 0.78637 0.84982 0.82670 1.90807 1.58690 1.61803 1.30807 1.48564 1.58270 1.20578 1.06775 1.21985 1.00679 0.96268 0.82717 1.22965 1.01524 0.96016 0.97735 1.21243 0.94053 0.88634 0.89513 0.91302 1.42313 1.17319 1.02869 1.73822 1.20104 1.04025 0.82787 1.40147 0.91452 1.25814 0.93598 1.05768 0.98583 1.70865 1.25614 1.14417 1.47597 0.83197 0.75377 0.74361 0.75731 1.22187 1.22008 1.21296 1.23387 0.97046 0.82574 1.01346 0.91117 0.91495 0.91105 0.85910 0.90973 0.91107 0.91473 0.91682 0.91826 0.90165 0.90704 0.79619 0.93325 0.91720 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.16 36.01 0.33 -1.14 16 2 C -0.12 -1.27 9.97 -36.13 -0.36 -1.63 16 3 C -0.16 -2.03 4.93 -102.84 -0.51 -2.54 16 4 C -0.10 -1.02 10.02 36.01 0.36 -0.66 16 5 C 0.57 9.57 6.05 -12.66 -0.08 9.49 16 6 O -0.54 -11.45 17.40 5.27 0.09 -11.36 16 7 N -0.61 -9.90 3.33 -171.91 -0.57 -10.48 16 8 C 0.11 1.39 6.41 -3.06 -0.02 1.37 16 9 C -0.14 -2.14 6.60 -24.89 -0.16 -2.30 16 10 C 0.18 3.46 3.71 -65.78 -0.24 3.21 16 11 H 0.07 1.38 8.09 -51.93 -0.42 0.96 16 12 N -0.72 -17.51 5.24 -51.35 -0.27 -17.78 16 13 C -0.34 -9.38 9.96 -15.06 -0.15 -9.53 16 14 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 15 C -0.04 -1.13 5.50 -17.43 -0.10 -1.23 16 16 N -0.94 -28.58 13.70 55.49 0.76 -27.82 16 17 Si 1.08 25.75 29.92 -169.99 -5.09 20.66 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 21 C 0.08 1.58 6.58 -2.53 -0.02 1.56 16 22 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.81 6.51 -51.93 -0.34 0.47 16 25 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 28 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.72 6.63 -51.93 -0.34 0.38 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.12 8.00 -51.93 -0.42 0.71 16 33 H 0.37 9.16 6.59 -40.82 -0.27 8.89 16 34 H 0.26 7.60 6.77 -40.82 -0.28 7.32 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.07 1.51 8.08 -51.93 -0.42 1.09 16 LS Contribution 301.36 15.07 4.54 4.54 Total: -1.00 -32.86 301.36 -6.96 -39.82 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.49 Total: 5.80 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -0.94 Total: -3.39 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -0.08 Total: -56.08 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.09 Total: 20.66 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.86 -6.96 -39.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018693457.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.625 kcal (2) G-P(sol) polarization free energy of solvation -32.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds