Wall clock time and date at job start Sun Mar 29 2020 22:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32996 * 119.99830 * 2 1 4 4 C 1.50701 * 119.99830 * 180.02562 * 3 2 1 5 5 C 1.47105 * 120.00090 * 359.97438 * 3 2 1 6 6 O 1.21612 * 119.99930 * 263.36071 * 5 3 2 7 7 N 1.34773 * 119.99734 * 83.36276 * 5 3 2 8 8 C 1.47024 * 125.64941 * 355.40203 * 7 5 3 9 9 C 1.54325 * 107.26861 * 178.91966 * 8 7 5 10 10 C 1.55160 * 102.94448 * 337.80669 * 9 8 7 11 11 H 1.09001 * 110.99887 * 277.38946 * 10 9 8 12 12 N 1.46501 * 111.00420 * 153.57697 * 10 9 8 13 13 C 1.36929 * 119.99917 * 154.99952 * 12 10 9 14 14 H 1.08003 * 119.99977 * 359.97438 * 13 12 10 15 15 C 1.38813 * 120.00176 * 180.02562 * 13 12 10 16 16 N 1.31612 * 119.99899 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00062 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47174 * 269.99778 * 17 15 13 19 19 H 1.48503 * 109.47252 * 30.00090 * 17 15 13 20 20 H 1.48505 * 109.46999 * 149.99833 * 17 15 13 21 21 C 1.47429 * 125.64737 * 175.37436 * 7 5 3 22 22 H 1.08999 * 109.46975 * 60.00429 * 1 2 3 23 23 H 1.08998 * 109.47287 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47303 * 300.00336 * 1 2 3 25 25 H 1.07998 * 120.00305 * 179.97438 * 2 1 3 26 26 H 1.08995 * 109.46832 * 275.01853 * 4 3 2 27 27 H 1.08998 * 109.47277 * 35.02540 * 4 3 2 28 28 H 1.09005 * 109.46947 * 155.02274 * 4 3 2 29 29 H 1.08995 * 109.88024 * 59.50492 * 8 7 5 30 30 H 1.08995 * 110.00686 * 298.40578 * 8 7 5 31 31 H 1.08997 * 110.71896 * 219.44435 * 9 8 7 32 32 H 1.09000 * 110.87502 * 96.24132 * 9 8 7 33 33 H 0.96997 * 119.99786 * 335.00479 * 12 10 9 34 34 H 0.97002 * 120.00061 * 0.02562 * 16 15 13 35 35 H 1.09004 * 110.36312 * 85.30817 * 21 7 5 36 36 H 1.08998 * 110.36679 * 322.99512 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1518 -0.0006 5 6 1.4364 2.4258 -0.0006 6 8 1.2382 3.0130 -1.0469 7 7 0.9822 2.9421 1.1585 8 6 1.0669 2.2954 2.4762 9 6 0.4460 3.2654 3.5034 10 6 0.5587 4.6410 2.7946 11 1 1.5517 5.0699 2.9296 12 7 -0.4770 5.5624 3.2685 13 6 -0.2775 6.9149 3.1916 14 1 0.6436 7.3024 2.7819 15 6 -1.2587 7.7879 3.6412 16 7 -2.3805 7.3156 4.1418 17 14 -0.9862 9.6330 3.5369 18 1 -0.3401 10.1093 4.7863 19 1 -0.1092 9.9392 2.3783 20 1 -2.2927 10.3173 3.3633 21 6 0.3187 4.2492 1.3152 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 2.0470 -0.9353 0.0004 26 1 4.0426 1.0617 1.0230 27 1 4.0421 0.3104 -0.5907 28 1 4.0421 2.0835 -0.4345 29 1 2.1099 2.1051 2.7293 30 1 0.5105 1.3581 2.4680 31 1 1.0175 3.2619 4.4315 32 1 -0.5974 3.0140 3.6937 33 1 -1.3041 5.2143 3.6369 34 1 -2.5216 6.3575 4.1970 35 1 -0.7491 4.1590 1.1151 36 1 0.7692 4.9856 0.6498 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018693457.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:04 Heat of formation + Delta-G solvation = -33.465486 kcal Electronic energy + Delta-G solvation = -17125.829101 eV Core-core repulsion = 14416.468149 eV Total energy + Delta-G solvation = -2709.360952 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.29991 -38.90912 -36.45388 -36.14612 -33.28043 -31.22639 -31.00139 -29.19748 -26.32594 -25.48560 -24.40299 -22.52001 -21.78281 -19.67665 -19.29383 -17.70594 -17.30988 -16.71594 -16.33212 -15.98892 -15.60546 -14.90463 -14.73933 -14.62947 -14.39555 -14.11166 -13.82786 -13.60773 -13.26316 -12.98413 -12.81152 -12.74005 -12.58182 -12.48149 -12.35860 -11.90316 -11.78404 -11.31834 -11.10066 -10.95381 -9.92836 -9.79292 -9.21861 -8.43941 -5.40140 0.79477 1.44886 1.57662 1.67735 1.81962 1.98240 2.68062 3.30764 3.46220 3.50241 3.78850 3.90158 4.00277 4.12523 4.22025 4.30426 4.38982 4.49884 4.54300 4.63056 4.72709 4.78285 4.80319 4.87626 4.95868 5.07729 5.10388 5.13159 5.24131 5.45478 5.56639 5.63207 6.44434 6.46199 6.98390 7.02826 7.91547 8.01353 9.07726 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.041427 B = 0.005251 C = 0.005087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.717975 B = 5330.981884 C = 5502.890282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 C -0.185 4.185 4 C -0.098 4.098 5 C 0.562 3.438 6 O -0.599 6.599 7 N -0.607 5.607 8 C 0.110 3.890 9 C -0.130 4.130 10 C 0.172 3.828 11 H 0.064 0.936 12 N -0.734 5.734 13 C -0.339 4.339 14 H 0.065 0.935 15 C -0.096 4.096 16 N -0.971 5.971 17 Si 1.128 2.872 18 H -0.280 1.280 19 H -0.278 1.278 20 H -0.293 1.293 21 C 0.091 3.909 22 H 0.044 0.956 23 H 0.096 0.904 24 H 0.063 0.937 25 H 0.165 0.835 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.045 0.955 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.365 0.635 34 H 0.246 0.754 35 H 0.044 0.956 36 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.825 -17.915 -2.885 21.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 C -0.188 4.188 4 C -0.154 4.154 5 C 0.353 3.647 6 O -0.481 6.481 7 N -0.339 5.339 8 C -0.012 4.012 9 C -0.169 4.169 10 C 0.061 3.939 11 H 0.082 0.918 12 N -0.375 5.375 13 C -0.471 4.471 14 H 0.083 0.917 15 C -0.288 4.288 16 N -0.619 5.619 17 Si 0.953 3.047 18 H -0.206 1.206 19 H -0.204 1.204 20 H -0.219 1.219 21 C -0.035 4.035 22 H 0.063 0.937 23 H 0.115 0.885 24 H 0.082 0.918 25 H 0.182 0.818 26 H 0.110 0.890 27 H 0.114 0.886 28 H 0.064 0.936 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.198 0.802 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 10.286 -16.049 -3.239 19.336 hybrid contribution -0.081 -1.083 -0.519 1.204 sum 10.206 -17.132 -3.758 20.293 Atomic orbital electron populations 1.21073 0.93438 1.04117 1.01284 1.23607 0.95956 0.97335 0.94419 1.21505 0.98073 0.91050 1.08156 1.20683 0.87732 1.03122 1.03907 1.19034 0.77903 0.86101 0.81657 1.90769 1.60721 1.63790 1.32780 1.48629 1.57585 1.19370 1.08349 1.22196 1.02808 0.96168 0.79987 1.22890 1.02288 0.92943 0.98742 1.21390 0.92369 0.90311 0.89831 0.91808 1.42431 1.18266 1.02584 1.74223 1.20399 1.03562 0.84542 1.38566 0.91718 1.27147 0.93300 1.09648 0.98704 1.70964 1.26954 1.13937 1.49997 0.82618 0.75309 0.70024 0.76793 1.20612 1.20355 1.21918 1.22944 0.95839 0.84085 1.00631 0.93694 0.88517 0.91838 0.81792 0.88992 0.88612 0.93591 0.88697 0.89184 0.87978 0.90765 0.80195 0.94307 0.93802 0.94091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.16 71.24 0.65 -2.03 16 2 C -0.09 -1.61 9.97 24.52 0.24 -1.36 16 3 C -0.18 -4.20 4.93 -18.70 -0.09 -4.29 16 4 C -0.10 -1.64 10.02 71.24 0.71 -0.92 16 5 C 0.56 18.85 6.05 86.57 0.52 19.38 16 6 O -0.60 -26.24 17.40 -4.07 -0.07 -26.32 16 7 N -0.61 -19.46 3.33 -816.06 -2.71 -22.18 16 8 C 0.11 2.55 6.41 86.73 0.56 3.10 16 9 C -0.13 -3.62 6.60 31.78 0.21 -3.41 16 10 C 0.17 6.70 3.71 46.38 0.17 6.87 16 11 H 0.06 2.55 8.09 -2.39 -0.02 2.53 16 12 N -0.73 -36.31 5.24 -316.38 -1.66 -37.96 16 13 C -0.34 -19.04 9.96 84.04 0.84 -18.20 16 14 H 0.06 3.59 7.83 -2.91 -0.02 3.57 16 15 C -0.10 -5.56 5.50 84.86 0.47 -5.09 16 16 N -0.97 -60.17 13.70 21.65 0.30 -59.88 16 17 Si 1.13 52.20 29.92 68.60 2.05 54.25 16 18 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 19 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 21 C 0.09 3.67 6.58 86.85 0.57 4.24 16 22 H 0.04 1.10 8.09 -2.39 -0.02 1.08 16 23 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.06 1.30 6.51 -2.39 -0.02 1.28 16 25 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 26 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.10 1.12 8.10 -2.39 -0.02 1.11 16 28 H 0.04 0.96 8.08 -2.38 -0.02 0.94 16 29 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.09 1.68 6.63 -2.39 -0.02 1.67 16 31 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.07 2.10 8.00 -2.39 -0.02 2.09 16 33 H 0.37 18.56 6.59 -92.71 -0.61 17.95 16 34 H 0.25 15.09 6.77 -92.71 -0.63 14.46 16 35 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.04 1.85 8.08 -2.39 -0.02 1.83 16 Total: -1.00 -74.61 301.36 3.35 -71.26 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.59 Total: 22.55 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 4.86 Total: -1.72 kcal Atomic # 7 Polarization: -115.94 SS G_CDS: -4.08 Total: -120.02 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.07 Total: -26.32 kcal Atomic # 14 Polarization: 52.20 SS G_CDS: 2.05 Total: 54.25 kcal Total: -74.61 3.35 -71.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018693457.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.791 kcal (2) G-P(sol) polarization free energy of solvation -74.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds