Wall clock time and date at job start Sun Mar 29 2020 22:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 115.55609 * 2 1 4 4 O 1.21277 * 119.99948 * 214.41589 * 3 2 1 5 5 N 1.34779 * 119.99369 * 34.41792 * 3 2 1 6 6 C 1.46496 * 119.99390 * 180.02562 * 5 3 2 7 7 H 1.09000 * 112.91246 * 23.74616 * 6 5 3 8 8 C 1.53786 * 113.61518 * 154.99856 * 6 5 3 9 9 C 1.53781 * 87.17350 * 89.15486 * 8 6 5 10 10 H 1.08996 * 113.61580 * 270.76247 * 9 8 6 11 11 N 1.46499 * 113.61225 * 139.93836 * 9 8 6 12 12 C 1.36942 * 119.99692 * 155.00127 * 11 9 8 13 13 H 1.08002 * 120.00087 * 0.02562 * 12 11 9 14 14 C 1.38815 * 119.99940 * 180.02562 * 12 11 9 15 15 N 1.31613 * 119.99968 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99698 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47567 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47010 * 120.00212 * 16 14 12 19 19 H 1.48510 * 109.46957 * 239.99733 * 16 14 12 20 20 C 1.53782 * 87.08260 * 25.39213 * 9 8 6 21 21 C 1.53002 * 117.49741 * 145.67129 * 2 1 3 22 22 C 1.53006 * 117.49801 * 214.32683 * 2 1 3 23 23 H 1.09003 * 109.47229 * 85.57614 * 1 2 3 24 24 H 1.08994 * 109.47475 * 205.58752 * 1 2 3 25 25 H 1.09009 * 109.46411 * 325.58589 * 1 2 3 26 26 H 0.97001 * 120.00492 * 359.97438 * 5 3 2 27 27 H 1.09002 * 113.61357 * 334.56403 * 8 6 5 28 28 H 1.09002 * 113.61608 * 203.74565 * 8 6 5 29 29 H 0.96997 * 120.00777 * 335.00229 * 11 9 8 30 30 H 0.97003 * 119.99921 * 180.02562 * 15 14 12 31 31 H 1.08997 * 113.61668 * 89.11298 * 20 9 8 32 32 H 1.08998 * 113.61674 * 219.93807 * 20 9 8 33 33 H 1.08995 * 117.49924 * 215.00122 * 21 2 1 34 34 H 1.09006 * 117.49895 * 0.02562 * 21 2 1 35 35 H 1.09004 * 117.49503 * 359.97438 * 22 2 1 36 36 H 1.09002 * 117.49879 * 144.97508 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1801 1.3596 0.0000 4 8 3.2234 1.5329 -0.5936 5 7 1.6020 2.3828 0.6598 6 6 2.2337 3.7046 0.6593 7 1 2.8943 3.8590 -0.1939 8 6 1.2452 4.8599 0.8900 9 6 1.5042 4.6800 2.3951 10 1 0.8335 3.9648 2.8711 11 7 1.6015 5.9442 3.1290 12 6 1.3193 5.9817 4.4685 13 1 1.0253 5.0793 4.9839 14 6 1.4110 7.1797 5.1638 15 7 1.7687 8.2795 4.5356 16 14 1.0253 7.2310 6.9908 17 1 0.6488 5.8718 7.4557 18 1 2.2224 7.6958 7.7366 19 1 -0.1026 8.1664 7.2326 20 6 2.8688 4.0851 2.0093 21 6 2.2364 -1.1208 0.7654 22 6 2.2364 -1.1208 -0.7653 23 1 -0.3634 0.0793 -1.0246 24 1 -0.3634 -0.9268 0.4438 25 1 -0.3632 0.8479 0.5809 26 1 0.7674 2.2443 1.1343 27 1 0.2232 4.6262 0.5917 28 1 1.5922 5.8162 0.4985 29 1 1.8659 6.7546 2.6662 30 1 1.8332 9.1165 5.0215 31 1 3.6608 4.8289 1.9234 32 1 3.1581 3.2267 2.6156 33 1 3.1713 -0.8747 1.2689 34 1 1.6111 -1.8584 1.2685 35 1 1.6111 -1.8584 -1.2685 36 1 3.1711 -0.8747 -1.2692 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020180712.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:21 Heat of formation + Delta-G solvation = 15.428650 kcal Electronic energy + Delta-G solvation = -16747.599301 eV Core-core repulsion = 14040.358558 eV Total energy + Delta-G solvation = -2707.240743 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.29859 -38.42698 -36.50289 -34.06333 -32.60491 -29.96461 -28.72240 -25.12184 -24.94133 -23.52891 -22.66822 -21.95138 -19.58360 -18.96064 -17.23764 -16.96504 -15.95202 -15.09851 -15.00593 -14.64723 -14.23992 -13.88881 -13.56250 -13.28096 -12.79723 -12.63677 -12.41458 -12.12257 -11.85926 -11.67994 -11.62679 -10.92608 -10.79242 -10.74943 -10.33497 -10.19832 -10.19595 -9.91675 -9.69711 -9.56126 -8.92105 -8.76286 -6.99357 -5.81238 -3.10248 2.51929 3.17333 3.40693 3.46360 3.48657 3.66432 4.42428 4.56452 4.59845 4.65218 4.77305 5.04272 5.21506 5.38023 5.43026 5.44017 5.46614 5.49601 5.57419 5.69079 5.86149 5.86466 5.93829 5.95942 6.15468 6.25153 6.32162 6.52430 6.63303 6.69923 7.08126 7.63352 7.66731 8.31902 8.37175 9.48535 10.05916 10.40386 11.41212 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.041354 B = 0.004592 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.911546 B = 6095.949774 C = 6377.565391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.168 4.168 3 C 0.550 3.450 4 O -0.545 6.545 5 N -0.701 5.701 6 C 0.114 3.886 7 H 0.095 0.905 8 C -0.159 4.159 9 C 0.167 3.833 10 H 0.073 0.927 11 N -0.712 5.712 12 C -0.245 4.245 13 H 0.071 0.929 14 C -0.012 4.012 15 N -0.932 5.932 16 Si 0.907 3.093 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.291 1.291 20 C -0.176 4.176 21 C -0.150 4.150 22 C -0.146 4.146 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.400 0.600 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.386 0.614 30 H 0.255 0.745 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.009 -16.830 -9.273 19.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.171 4.171 3 C 0.336 3.664 4 O -0.422 6.422 5 N -0.352 5.352 6 C 0.009 3.991 7 H 0.113 0.887 8 C -0.199 4.199 9 C 0.055 3.945 10 H 0.091 0.909 11 N -0.350 5.350 12 C -0.376 4.376 13 H 0.089 0.911 14 C -0.208 4.208 15 N -0.580 5.580 16 Si 0.738 3.262 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.218 1.218 20 C -0.218 4.218 21 C -0.187 4.187 22 C -0.183 4.183 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.236 0.764 27 H 0.082 0.918 28 H 0.110 0.890 29 H 0.220 0.780 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.331 -16.675 -9.482 19.323 hybrid contribution -0.474 0.381 1.152 1.302 sum -2.804 -16.294 -8.331 18.514 Atomic orbital electron populations 1.21357 0.90487 1.02714 1.02597 1.21513 0.95921 0.89755 1.09892 1.19439 0.84245 0.84728 0.78021 1.90675 1.23350 1.83808 1.44393 1.45665 1.26914 1.09574 1.53028 1.21873 0.96385 0.81241 0.99620 0.88663 1.23857 0.98398 0.97739 0.99898 1.21609 0.93697 0.89811 0.89421 0.90881 1.42410 1.80484 1.05126 1.07004 1.19344 1.38615 0.94353 0.85309 0.91065 1.24766 1.02228 0.95598 0.98231 1.69667 1.54075 0.98985 1.35227 0.86121 0.77535 0.77313 0.85231 1.20532 1.21806 1.21817 1.24332 1.01407 1.00787 0.95257 1.23108 1.02177 0.98376 0.95064 1.23025 1.02658 0.98229 0.94389 0.91590 0.91475 0.91725 0.76419 0.91786 0.89016 0.78005 0.93461 0.89602 0.92455 0.88273 0.87813 0.88067 0.87493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 9.79 37.16 0.36 -0.54 16 2 C -0.17 -1.76 2.61 -155.65 -0.41 -2.17 16 3 C 0.55 7.85 7.39 -10.98 -0.08 7.77 16 4 O -0.54 -9.81 15.86 5.56 0.09 -9.72 16 5 N -0.70 -9.48 5.16 -52.92 -0.27 -9.76 16 6 C 0.11 1.78 4.33 -67.02 -0.29 1.49 16 7 H 0.10 1.57 7.47 -51.93 -0.39 1.19 16 8 C -0.16 -2.55 7.57 -25.92 -0.20 -2.74 16 9 C 0.17 3.22 4.36 -67.12 -0.29 2.93 16 10 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 11 N -0.71 -17.64 5.40 -52.64 -0.28 -17.93 16 12 C -0.24 -6.74 9.97 -15.06 -0.15 -6.89 16 13 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 14 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 15 N -0.93 -27.97 13.06 55.49 0.72 -27.24 16 16 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 C -0.18 -3.15 7.68 -25.82 -0.20 -3.35 16 21 C -0.15 -1.38 9.88 -26.69 -0.26 -1.65 16 22 C -0.15 -1.38 9.77 -26.69 -0.26 -1.64 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.43 7.90 -51.93 -0.41 0.02 16 25 H 0.06 0.49 6.39 -51.92 -0.33 0.16 16 26 H 0.40 4.57 7.01 -40.82 -0.29 4.28 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.09 1.50 8.12 -51.93 -0.42 1.08 16 29 H 0.39 10.14 7.92 -40.82 -0.32 9.82 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.10 0.73 8.05 -51.93 -0.42 0.32 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.11 1.18 7.67 -51.93 -0.40 0.78 16 LS Contribution 302.82 15.07 4.56 4.56 Total: -1.00 -31.87 302.82 -7.56 -39.43 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -5.48 Total: 10.74 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -1.87 Total: -7.24 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 0.17 Total: -54.92 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.87 -7.56 -39.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020180712.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.859 kcal (2) G-P(sol) polarization free energy of solvation -31.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds