Wall clock time and date at job start Sun Mar 29 2020 22:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 115.55609 * 2 1 4 4 O 1.21277 * 119.99948 * 214.41589 * 3 2 1 5 5 N 1.34779 * 119.99369 * 34.41792 * 3 2 1 6 6 C 1.46496 * 119.99390 * 180.02562 * 5 3 2 7 7 H 1.09000 * 112.91246 * 23.74616 * 6 5 3 8 8 C 1.53786 * 113.61518 * 154.99856 * 6 5 3 9 9 C 1.53781 * 87.17350 * 89.15486 * 8 6 5 10 10 H 1.08996 * 113.61580 * 270.76247 * 9 8 6 11 11 N 1.46499 * 113.61225 * 139.93836 * 9 8 6 12 12 C 1.36942 * 119.99692 * 155.00127 * 11 9 8 13 13 H 1.08002 * 120.00087 * 0.02562 * 12 11 9 14 14 C 1.38815 * 119.99940 * 180.02562 * 12 11 9 15 15 N 1.31613 * 119.99968 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99698 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47567 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47010 * 120.00212 * 16 14 12 19 19 H 1.48510 * 109.46957 * 239.99733 * 16 14 12 20 20 C 1.53782 * 87.08260 * 25.39213 * 9 8 6 21 21 C 1.53002 * 117.49741 * 145.67129 * 2 1 3 22 22 C 1.53006 * 117.49801 * 214.32683 * 2 1 3 23 23 H 1.09003 * 109.47229 * 85.57614 * 1 2 3 24 24 H 1.08994 * 109.47475 * 205.58752 * 1 2 3 25 25 H 1.09009 * 109.46411 * 325.58589 * 1 2 3 26 26 H 0.97001 * 120.00492 * 359.97438 * 5 3 2 27 27 H 1.09002 * 113.61357 * 334.56403 * 8 6 5 28 28 H 1.09002 * 113.61608 * 203.74565 * 8 6 5 29 29 H 0.96997 * 120.00777 * 335.00229 * 11 9 8 30 30 H 0.97003 * 119.99921 * 180.02562 * 15 14 12 31 31 H 1.08997 * 113.61668 * 89.11298 * 20 9 8 32 32 H 1.08998 * 113.61674 * 219.93807 * 20 9 8 33 33 H 1.08995 * 117.49924 * 215.00122 * 21 2 1 34 34 H 1.09006 * 117.49895 * 0.02562 * 21 2 1 35 35 H 1.09004 * 117.49503 * 359.97438 * 22 2 1 36 36 H 1.09002 * 117.49879 * 144.97508 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1801 1.3596 0.0000 4 8 3.2234 1.5329 -0.5936 5 7 1.6020 2.3828 0.6598 6 6 2.2337 3.7046 0.6593 7 1 2.8943 3.8590 -0.1939 8 6 1.2452 4.8599 0.8900 9 6 1.5042 4.6800 2.3951 10 1 0.8335 3.9648 2.8711 11 7 1.6015 5.9442 3.1290 12 6 1.3193 5.9817 4.4685 13 1 1.0253 5.0793 4.9839 14 6 1.4110 7.1797 5.1638 15 7 1.7687 8.2795 4.5356 16 14 1.0253 7.2310 6.9908 17 1 0.6488 5.8718 7.4557 18 1 2.2224 7.6958 7.7366 19 1 -0.1026 8.1664 7.2326 20 6 2.8688 4.0851 2.0093 21 6 2.2364 -1.1208 0.7654 22 6 2.2364 -1.1208 -0.7653 23 1 -0.3634 0.0793 -1.0246 24 1 -0.3634 -0.9268 0.4438 25 1 -0.3632 0.8479 0.5809 26 1 0.7674 2.2443 1.1343 27 1 0.2232 4.6262 0.5917 28 1 1.5922 5.8162 0.4985 29 1 1.8659 6.7546 2.6662 30 1 1.8332 9.1165 5.0215 31 1 3.6608 4.8289 1.9234 32 1 3.1581 3.2267 2.6156 33 1 3.1713 -0.8747 1.2689 34 1 1.6111 -1.8584 1.2685 35 1 1.6111 -1.8584 -1.2685 36 1 3.1711 -0.8747 -1.2692 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020180712.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:20 Heat of formation + Delta-G solvation = -6.041169 kcal Electronic energy + Delta-G solvation = -16748.530302 eV Core-core repulsion = 14040.358558 eV Total energy + Delta-G solvation = -2708.171744 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.44666 -39.72776 -37.50530 -35.79668 -34.14500 -31.84410 -29.43753 -26.65459 -26.51297 -24.94511 -23.47405 -23.35083 -20.64466 -20.41562 -19.13547 -18.01908 -17.27288 -16.70428 -16.07042 -16.01653 -15.62687 -15.37219 -14.98398 -14.35248 -13.97150 -13.55489 -13.45861 -13.44627 -13.34725 -13.20272 -12.84808 -12.60408 -12.36916 -12.10833 -11.86552 -11.76390 -11.50930 -11.22495 -10.96040 -10.86351 -10.80109 -10.04884 -9.00175 -7.95410 -5.24180 1.45231 1.48218 1.48808 1.58688 2.08532 2.56391 2.86097 3.36311 3.63992 3.66802 3.74804 3.83315 3.92397 3.93784 4.03484 4.30030 4.30767 4.68014 4.72058 4.80230 4.87750 4.88385 4.88597 4.94653 4.99290 5.10628 5.18663 5.22254 5.24932 5.30706 5.50605 5.68387 6.26694 6.54049 7.21582 7.32986 8.08868 8.31663 9.28176 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.041354 B = 0.004592 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.911546 B = 6095.949774 C = 6377.565391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.176 4.176 3 C 0.543 3.457 4 O -0.589 6.589 5 N -0.693 5.693 6 C 0.131 3.869 7 H 0.087 0.913 8 C -0.142 4.142 9 C 0.155 3.845 10 H 0.084 0.916 11 N -0.727 5.727 12 C -0.244 4.244 13 H 0.079 0.921 14 C -0.075 4.075 15 N -0.970 5.970 16 Si 0.972 3.028 17 H -0.264 1.264 18 H -0.296 1.296 19 H -0.293 1.293 20 C -0.173 4.173 21 C -0.142 4.142 22 C -0.144 4.144 23 H 0.070 0.930 24 H 0.089 0.911 25 H 0.066 0.934 26 H 0.413 0.587 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.374 0.626 30 H 0.251 0.749 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.647 -19.020 -9.118 21.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.179 4.179 3 C 0.331 3.669 4 O -0.469 6.469 5 N -0.344 5.344 6 C 0.024 3.976 7 H 0.105 0.895 8 C -0.181 4.181 9 C 0.045 3.955 10 H 0.101 0.899 11 N -0.365 5.365 12 C -0.376 4.376 13 H 0.097 0.903 14 C -0.268 4.268 15 N -0.621 5.621 16 Si 0.801 3.199 17 H -0.188 1.188 18 H -0.224 1.224 19 H -0.220 1.220 20 C -0.215 4.215 21 C -0.179 4.179 22 C -0.182 4.182 23 H 0.089 0.911 24 H 0.107 0.893 25 H 0.085 0.915 26 H 0.251 0.749 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.206 0.794 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.002 -18.932 -9.333 21.483 hybrid contribution 0.086 0.987 1.045 1.440 sum -3.916 -17.945 -8.288 20.151 Atomic orbital electron populations 1.21398 0.88092 1.04046 1.03247 1.21565 0.97478 0.87565 1.11330 1.20187 0.83693 0.86082 0.76893 1.90656 1.25410 1.84690 1.46189 1.45581 1.27204 1.08649 1.52948 1.21561 0.95880 0.82355 0.97756 0.89457 1.23667 0.99838 0.97717 0.96880 1.21932 0.94578 0.88096 0.90910 0.89851 1.42603 1.80751 1.06497 1.06605 1.19755 1.36808 0.94428 0.86628 0.90314 1.25569 1.03272 0.95482 1.02438 1.69820 1.56183 0.99387 1.36714 0.85094 0.76755 0.77785 0.80250 1.18820 1.22365 1.21998 1.24188 1.00295 1.00174 0.96809 1.23218 1.01722 0.97987 0.94973 1.23099 1.02065 0.98241 0.94757 0.91145 0.89250 0.91477 0.74873 0.89410 0.89456 0.79382 0.94029 0.91221 0.92743 0.89945 0.84838 0.85236 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 9.79 71.98 0.70 -0.67 16 2 C -0.18 -3.31 2.61 -52.92 -0.14 -3.45 16 3 C 0.54 14.93 7.39 87.66 0.65 15.58 16 4 O -0.59 -21.29 15.86 -3.02 -0.05 -21.34 16 5 N -0.69 -17.59 5.16 -439.74 -2.27 -19.86 16 6 C 0.13 3.96 4.33 45.58 0.20 4.16 16 7 H 0.09 2.86 7.47 -2.39 -0.02 2.84 16 8 C -0.14 -4.33 7.57 31.12 0.24 -4.09 16 9 C 0.15 5.83 4.36 45.52 0.20 6.02 16 10 H 0.08 2.97 8.10 -2.39 -0.02 2.95 16 11 N -0.73 -36.04 5.40 -320.44 -1.73 -37.78 16 12 C -0.24 -13.34 9.97 84.03 0.84 -12.51 16 13 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 14 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 15 N -0.97 -59.19 13.06 21.65 0.28 -58.91 16 16 Si 0.97 45.60 29.55 68.60 2.03 47.62 16 17 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 18 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 19 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 20 C -0.17 -6.16 7.68 31.18 0.24 -5.92 16 21 C -0.14 -2.27 9.88 30.62 0.30 -1.97 16 22 C -0.14 -2.45 9.77 30.62 0.30 -2.15 16 23 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.09 0.74 7.90 -2.39 -0.02 0.72 16 25 H 0.07 0.79 6.39 -2.38 -0.02 0.77 16 26 H 0.41 8.37 7.01 -92.71 -0.65 7.72 16 27 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.09 2.80 8.12 -2.39 -0.02 2.78 16 29 H 0.37 20.02 7.92 -92.71 -0.73 19.28 16 30 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 31 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 34 H 0.13 1.35 8.05 -2.38 -0.02 1.33 16 35 H 0.13 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.08 1.83 7.67 -2.39 -0.02 1.81 16 Total: -1.00 -69.12 302.82 1.95 -67.17 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: -0.30 Total: 31.90 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 3.99 Total: -8.81 kcal Atomic # 7 Polarization: -112.82 SS G_CDS: -3.72 Total: -116.54 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.05 Total: -21.34 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -69.12 1.95 -67.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020180712.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.128 kcal (2) G-P(sol) polarization free energy of solvation -69.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds