Wall clock time and date at job start Sun Mar 29 2020 21:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86789 * 120.00204 * 2 1 4 4 H 1.48507 * 109.47191 * 272.24919 * 3 2 1 5 5 H 1.48500 * 109.47640 * 32.24971 * 3 2 1 6 6 H 1.48506 * 109.47296 * 152.25180 * 3 2 1 7 7 C 1.38813 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00106 * 342.39552 * 7 2 1 9 9 N 1.36939 * 119.99809 * 162.39521 * 7 2 1 10 10 C 1.47422 * 125.64761 * 324.44769 * 9 7 2 11 11 C 1.54912 * 104.82943 * 155.90436 * 10 9 7 12 12 C 1.55408 * 101.66588 * 36.92765 * 11 10 9 13 13 C 1.47017 * 125.64612 * 144.48827 * 9 7 2 14 14 H 1.09005 * 109.88512 * 300.59854 * 13 9 7 15 15 C 1.52998 * 109.88464 * 61.61084 * 13 9 7 16 16 N 1.46508 * 109.46802 * 297.28745 * 15 13 9 17 17 C 1.34777 * 119.99714 * 173.56941 * 16 15 13 18 18 O 1.21276 * 120.00480 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99947 * 179.97438 * 17 16 15 20 20 C 1.52996 * 117.50038 * 248.62323 * 19 17 16 21 21 C 1.52999 * 117.50214 * 179.97438 * 19 17 16 22 22 H 0.97006 * 119.99486 * 0.02562 * 1 2 3 23 23 H 1.08991 * 110.36949 * 274.74375 * 10 9 7 24 24 H 1.09003 * 110.36798 * 37.07111 * 10 9 7 25 25 H 1.09004 * 111.00199 * 155.08409 * 11 10 9 26 26 H 1.08999 * 111.00659 * 278.89882 * 11 10 9 27 27 H 1.08999 * 110.84975 * 206.30025 * 12 11 10 28 28 H 1.09001 * 110.69344 * 82.95035 * 12 11 10 29 29 H 1.08997 * 109.47774 * 57.28360 * 15 13 9 30 30 H 1.08998 * 109.47828 * 177.28988 * 15 13 9 31 31 H 0.96995 * 120.00295 * 353.55964 * 16 15 13 32 32 H 1.09005 * 115.55123 * 34.32629 * 19 17 16 33 33 H 1.08994 * 117.50082 * 359.97438 * 20 19 17 34 34 H 1.08997 * 117.50294 * 145.02141 * 20 19 17 35 35 H 1.09001 * 117.50016 * 214.97828 * 21 19 17 36 36 H 1.08993 * 117.49739 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4502 2.0738 -1.3991 5 1 1.4724 2.6384 0.7471 6 1 3.5708 1.4267 0.6519 7 6 2.0102 -1.2022 0.0005 8 1 1.5080 -2.1155 0.2838 9 7 3.3315 -1.2302 -0.3581 10 6 3.9583 -0.3902 -1.3949 11 6 5.4563 -0.3306 -1.0047 12 6 5.6978 -1.7678 -0.4650 13 6 4.3596 -2.1035 0.2264 14 1 4.4388 -1.9175 1.2975 15 6 3.9994 -3.5697 -0.0217 16 7 2.7365 -3.8828 0.6517 17 6 2.1535 -5.0838 0.4659 18 8 2.6741 -5.9049 -0.2590 19 6 0.8548 -5.4062 1.1590 20 6 0.8860 -6.4687 2.2593 21 6 0.2430 -6.7857 0.9071 22 1 -0.4850 0.8401 -0.0004 23 1 3.8400 -0.8481 -2.3768 24 1 3.5241 0.6096 -1.3868 25 1 6.0793 -0.1301 -1.8763 26 1 5.6278 0.4118 -0.2253 27 1 6.5170 -1.7796 0.2540 28 1 5.8927 -2.4594 -1.2847 29 1 3.8923 -3.7414 -1.0927 30 1 4.7892 -4.2096 0.3717 31 1 2.3200 -3.2260 1.2313 32 1 0.1698 -4.5680 1.2876 33 1 1.8458 -6.9349 2.4817 34 1 0.2216 -6.3298 3.1122 35 1 -0.8441 -6.8552 0.8708 36 1 0.7797 -7.4600 0.2398 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027707406.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:23 Heat of formation + Delta-G solvation = 14.795717 kcal Electronic energy + Delta-G solvation = -17505.529618 eV Core-core repulsion = 14798.261429 eV Total energy + Delta-G solvation = -2707.268189 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.48289 -38.00690 -35.81645 -33.90186 -32.68618 -30.00231 -29.49476 -25.52858 -24.25857 -22.65958 -22.23714 -20.85405 -19.84206 -19.19295 -17.36920 -16.45966 -16.24555 -15.38607 -14.91660 -14.51795 -14.26152 -13.80053 -13.36841 -13.02359 -12.52400 -12.32355 -12.22772 -11.93147 -11.40911 -11.36310 -11.30254 -10.94355 -10.75017 -10.51939 -10.39785 -10.21953 -10.20538 -9.86368 -9.58062 -9.30200 -8.62555 -8.32799 -6.88646 -6.06459 -3.50773 2.99485 3.27027 3.40915 3.46035 3.76209 4.13112 4.45973 4.88991 5.00710 5.10006 5.12128 5.13222 5.31819 5.42678 5.49573 5.58082 5.71293 5.82638 5.93277 5.97001 6.09060 6.10464 6.17588 6.24647 6.29944 6.33340 6.38486 6.56085 6.82874 6.85000 7.10978 7.82096 8.18288 8.25733 8.73086 8.83496 9.58008 10.17327 11.07845 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.024092 B = 0.008377 C = 0.006562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.914292 B = 3341.788162 C = 4266.210837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.034 3.966 3 Si 0.891 3.109 4 H -0.287 1.287 5 H -0.304 1.304 6 H -0.269 1.269 7 C -0.257 4.257 8 H 0.092 0.908 9 N -0.601 5.601 10 C 0.116 3.884 11 C -0.136 4.136 12 C -0.121 4.121 13 C 0.143 3.857 14 H 0.048 0.952 15 C 0.116 3.884 16 N -0.703 5.703 17 C 0.539 3.461 18 O -0.565 6.565 19 C -0.188 4.188 20 C -0.157 4.157 21 C -0.151 4.151 22 H 0.265 0.735 23 H 0.031 0.969 24 H 0.042 0.958 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.414 0.586 32 H 0.128 0.872 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.254 -5.972 3.152 9.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.167 4.167 3 Si 0.723 3.277 4 H -0.215 1.215 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.384 4.384 8 H 0.109 0.891 9 N -0.328 5.328 10 C -0.008 4.008 11 C -0.174 4.174 12 C -0.160 4.160 13 C 0.036 3.964 14 H 0.066 0.934 15 C -0.010 4.010 16 N -0.355 5.355 17 C 0.325 3.675 18 O -0.445 6.445 19 C -0.209 4.209 20 C -0.194 4.194 21 C -0.188 4.188 22 H 0.074 0.926 23 H 0.049 0.951 24 H 0.060 0.940 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.253 0.747 32 H 0.146 0.854 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.378 -6.413 2.685 9.435 hybrid contribution 0.086 1.496 0.142 1.505 sum 6.464 -4.918 2.827 8.600 Atomic orbital electron populations 1.69805 1.05790 1.26883 1.51841 1.25432 0.95189 0.97988 0.98104 0.86700 0.79963 0.84008 0.77031 1.21504 1.23214 1.19455 1.18679 0.82390 0.94042 1.43328 0.89103 1.44681 1.05259 1.44238 1.38587 1.21913 0.90871 0.95343 0.92710 1.22823 0.97508 0.96727 1.00382 1.22534 0.96473 0.96999 0.99962 1.21280 0.88909 0.89460 0.96781 0.93431 1.21910 0.84634 0.96867 0.97553 1.46174 1.24673 1.15871 1.48784 1.19575 0.84921 0.81929 0.81028 1.90612 1.65585 1.48741 1.39542 1.22252 0.98477 0.95472 1.04734 1.22883 1.02997 1.01075 0.92472 1.22889 1.00204 0.96683 0.99025 0.92554 0.95090 0.93992 0.91529 0.91621 0.91368 0.91261 0.91805 0.93067 0.74682 0.85444 0.88647 0.88088 0.88226 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 13.97 55.49 0.78 -25.68 16 2 C 0.03 0.94 5.45 -17.43 -0.10 0.84 16 3 Si 0.89 21.90 24.85 -169.99 -4.22 17.68 16 4 H -0.29 -6.99 6.74 56.52 0.38 -6.61 16 5 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 6 H -0.27 -6.42 7.10 56.52 0.40 -6.02 16 7 C -0.26 -6.72 9.49 -15.06 -0.14 -6.86 16 8 H 0.09 2.44 5.40 -52.48 -0.28 2.15 16 9 N -0.60 -13.67 2.68 -162.58 -0.44 -14.11 16 10 C 0.12 2.44 6.26 -2.53 -0.02 2.43 16 11 C -0.14 -2.26 7.09 -24.44 -0.17 -2.43 16 12 C -0.12 -1.86 6.50 -24.76 -0.16 -2.02 16 13 C 0.14 2.66 3.32 -66.96 -0.22 2.44 16 14 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 15 C 0.12 2.15 5.17 -4.04 -0.02 2.13 16 16 N -0.70 -13.45 4.36 -60.29 -0.26 -13.71 16 17 C 0.54 10.39 7.61 -10.99 -0.08 10.30 16 18 O -0.56 -12.36 16.24 5.56 0.09 -12.27 16 19 C -0.19 -2.99 6.19 -91.77 -0.57 -3.56 16 20 C -0.16 -1.99 10.24 -26.71 -0.27 -2.26 16 21 C -0.15 -2.06 10.05 -26.71 -0.27 -2.33 16 22 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 23 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.04 0.96 3.11 -51.93 -0.16 0.80 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.99 7.85 -51.93 -0.41 0.58 16 29 H 0.06 1.31 8.11 -51.93 -0.42 0.88 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.41 8.04 6.15 -40.82 -0.25 7.79 16 32 H 0.13 2.02 8.14 -51.93 -0.42 1.59 16 33 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.10 1.54 7.67 -51.93 -0.40 1.14 16 LS Contribution 288.44 15.07 4.35 4.35 Total: -1.00 -30.87 288.44 -7.04 -37.92 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -5.31 Total: 7.15 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -2.02 Total: -1.32 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.08 Total: -53.50 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.09 Total: -12.27 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.22 Total: 17.68 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.87 -7.04 -37.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027707406.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.711 kcal (2) G-P(sol) polarization free energy of solvation -30.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds