Wall clock time and date at job start Sun Mar 29 2020 21:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86789 * 120.00204 * 2 1 4 4 H 1.48507 * 109.47191 * 272.24919 * 3 2 1 5 5 H 1.48500 * 109.47640 * 32.24971 * 3 2 1 6 6 H 1.48506 * 109.47296 * 152.25180 * 3 2 1 7 7 C 1.38813 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00106 * 342.39552 * 7 2 1 9 9 N 1.36939 * 119.99809 * 162.39521 * 7 2 1 10 10 C 1.47422 * 125.64761 * 324.44769 * 9 7 2 11 11 C 1.54912 * 104.82943 * 155.90436 * 10 9 7 12 12 C 1.55408 * 101.66588 * 36.92765 * 11 10 9 13 13 C 1.47017 * 125.64612 * 144.48827 * 9 7 2 14 14 H 1.09005 * 109.88512 * 300.59854 * 13 9 7 15 15 C 1.52998 * 109.88464 * 61.61084 * 13 9 7 16 16 N 1.46508 * 109.46802 * 297.28745 * 15 13 9 17 17 C 1.34777 * 119.99714 * 173.56941 * 16 15 13 18 18 O 1.21276 * 120.00480 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99947 * 179.97438 * 17 16 15 20 20 C 1.52996 * 117.50038 * 248.62323 * 19 17 16 21 21 C 1.52999 * 117.50214 * 179.97438 * 19 17 16 22 22 H 0.97006 * 119.99486 * 0.02562 * 1 2 3 23 23 H 1.08991 * 110.36949 * 274.74375 * 10 9 7 24 24 H 1.09003 * 110.36798 * 37.07111 * 10 9 7 25 25 H 1.09004 * 111.00199 * 155.08409 * 11 10 9 26 26 H 1.08999 * 111.00659 * 278.89882 * 11 10 9 27 27 H 1.08999 * 110.84975 * 206.30025 * 12 11 10 28 28 H 1.09001 * 110.69344 * 82.95035 * 12 11 10 29 29 H 1.08997 * 109.47774 * 57.28360 * 15 13 9 30 30 H 1.08998 * 109.47828 * 177.28988 * 15 13 9 31 31 H 0.96995 * 120.00295 * 353.55964 * 16 15 13 32 32 H 1.09005 * 115.55123 * 34.32629 * 19 17 16 33 33 H 1.08994 * 117.50082 * 359.97438 * 20 19 17 34 34 H 1.08997 * 117.50294 * 145.02141 * 20 19 17 35 35 H 1.09001 * 117.50016 * 214.97828 * 21 19 17 36 36 H 1.08993 * 117.49739 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4502 2.0738 -1.3991 5 1 1.4724 2.6384 0.7471 6 1 3.5708 1.4267 0.6519 7 6 2.0102 -1.2022 0.0005 8 1 1.5080 -2.1155 0.2838 9 7 3.3315 -1.2302 -0.3581 10 6 3.9583 -0.3902 -1.3949 11 6 5.4563 -0.3306 -1.0047 12 6 5.6978 -1.7678 -0.4650 13 6 4.3596 -2.1035 0.2264 14 1 4.4388 -1.9175 1.2975 15 6 3.9994 -3.5697 -0.0217 16 7 2.7365 -3.8828 0.6517 17 6 2.1535 -5.0838 0.4659 18 8 2.6741 -5.9049 -0.2590 19 6 0.8548 -5.4062 1.1590 20 6 0.8860 -6.4687 2.2593 21 6 0.2430 -6.7857 0.9071 22 1 -0.4850 0.8401 -0.0004 23 1 3.8400 -0.8481 -2.3768 24 1 3.5241 0.6096 -1.3868 25 1 6.0793 -0.1301 -1.8763 26 1 5.6278 0.4118 -0.2253 27 1 6.5170 -1.7796 0.2540 28 1 5.8927 -2.4594 -1.2847 29 1 3.8923 -3.7414 -1.0927 30 1 4.7892 -4.2096 0.3717 31 1 2.3200 -3.2260 1.2313 32 1 0.1698 -4.5680 1.2876 33 1 1.8458 -6.9349 2.4817 34 1 0.2216 -6.3298 3.1122 35 1 -0.8441 -6.8552 0.8708 36 1 0.7797 -7.4600 0.2398 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027707406.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:23 Heat of formation + Delta-G solvation = -5.699223 kcal Electronic energy + Delta-G solvation = -17506.418345 eV Core-core repulsion = 14798.261429 eV Total energy + Delta-G solvation = -2708.156916 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.96899 -39.53464 -37.06966 -35.45919 -34.63228 -31.77629 -30.99757 -27.01592 -26.02441 -24.13791 -23.30183 -22.29170 -21.44030 -20.68535 -19.03964 -18.02019 -17.92419 -16.91996 -16.51380 -15.97752 -15.66653 -15.31470 -14.92242 -14.84153 -14.19069 -13.86405 -13.65698 -13.47032 -13.05726 -12.95202 -12.63633 -12.43449 -12.28055 -12.08056 -11.73616 -11.54999 -11.53479 -11.39587 -11.37754 -10.81535 -10.66104 -9.91481 -8.76086 -8.16566 -5.56871 1.30747 1.40193 1.51286 1.55491 2.33832 2.45416 2.94073 3.05506 3.35224 3.78457 3.86652 3.91036 3.99969 4.03604 4.12512 4.28338 4.34856 4.47455 4.65631 4.71583 4.72887 4.83724 4.92812 4.98430 4.99550 5.03932 5.13806 5.22950 5.30487 5.47106 5.59132 5.88888 6.20563 6.64378 6.82365 7.29687 7.55494 8.21925 9.00909 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.024092 B = 0.008377 C = 0.006562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.914292 B = 3341.788162 C = 4266.210837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.024 4.024 3 Si 0.948 3.052 4 H -0.287 1.287 5 H -0.314 1.314 6 H -0.255 1.255 7 C -0.240 4.240 8 H 0.076 0.924 9 N -0.619 5.619 10 C 0.102 3.898 11 C -0.125 4.125 12 C -0.110 4.110 13 C 0.139 3.861 14 H 0.052 0.948 15 C 0.120 3.880 16 N -0.706 5.706 17 C 0.532 3.468 18 O -0.597 6.597 19 C -0.216 4.216 20 C -0.129 4.129 21 C -0.146 4.146 22 H 0.261 0.739 23 H 0.027 0.973 24 H 0.024 0.976 25 H 0.099 0.901 26 H 0.066 0.934 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.411 0.589 32 H 0.124 0.876 33 H 0.096 0.904 34 H 0.130 0.870 35 H 0.123 0.877 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.277 -6.316 3.890 11.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.221 4.221 3 Si 0.779 3.221 4 H -0.215 1.215 5 H -0.243 1.243 6 H -0.179 1.179 7 C -0.369 4.369 8 H 0.093 0.907 9 N -0.345 5.345 10 C -0.022 4.022 11 C -0.164 4.164 12 C -0.149 4.149 13 C 0.033 3.967 14 H 0.070 0.930 15 C -0.006 4.006 16 N -0.357 5.357 17 C 0.320 3.680 18 O -0.480 6.480 19 C -0.237 4.237 20 C -0.167 4.167 21 C -0.183 4.183 22 H 0.070 0.930 23 H 0.045 0.955 24 H 0.042 0.958 25 H 0.117 0.883 26 H 0.085 0.915 27 H 0.121 0.879 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.250 0.750 32 H 0.142 0.858 33 H 0.115 0.885 34 H 0.148 0.852 35 H 0.141 0.859 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.454 -6.763 3.426 11.356 hybrid contribution -0.528 1.489 -0.124 1.585 sum 7.926 -5.274 3.302 10.077 Atomic orbital electron populations 1.69925 1.07248 1.27183 1.55015 1.26015 0.95724 1.00990 0.99343 0.85777 0.79146 0.80392 0.76780 1.21542 1.24322 1.17897 1.18779 0.84090 0.93354 1.40645 0.90671 1.44861 1.04981 1.45052 1.39583 1.22088 0.94006 0.93828 0.92252 1.22795 0.94255 0.97527 1.01778 1.22571 0.95193 0.96247 1.00856 1.21501 0.89667 0.88296 0.97220 0.93032 1.21893 0.85074 0.97401 0.96212 1.46274 1.24980 1.15858 1.48610 1.20157 0.85750 0.81446 0.80606 1.90582 1.66804 1.49570 1.41000 1.22228 0.97130 0.96674 1.07680 1.23032 1.03406 0.97689 0.92530 1.22994 1.01459 0.94333 0.99562 0.92994 0.95531 0.95847 0.88278 0.91512 0.87919 0.90027 0.94124 0.90908 0.74999 0.85843 0.88541 0.85158 0.85882 0.89069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.35 13.97 21.65 0.30 -57.05 16 2 C -0.02 -1.37 5.45 84.86 0.46 -0.91 16 3 Si 0.95 45.66 24.85 68.60 1.71 47.36 16 4 H -0.29 -13.66 6.74 99.48 0.67 -12.99 16 5 H -0.31 -15.46 7.11 99.48 0.71 -14.76 16 6 H -0.25 -11.46 7.10 99.48 0.71 -10.75 16 7 C -0.24 -12.68 9.49 84.03 0.80 -11.88 16 8 H 0.08 4.15 5.40 -2.91 -0.02 4.13 16 9 N -0.62 -27.55 2.68 -668.27 -1.79 -29.34 16 10 C 0.10 4.14 6.26 86.86 0.54 4.68 16 11 C -0.13 -3.68 7.09 32.08 0.23 -3.45 16 12 C -0.11 -2.94 6.50 31.87 0.21 -2.73 16 13 C 0.14 4.90 3.32 45.34 0.15 5.05 16 14 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 15 C 0.12 4.31 5.17 86.38 0.45 4.76 16 16 N -0.71 -27.07 4.36 -463.05 -2.02 -29.09 16 17 C 0.53 20.65 7.61 87.66 0.67 21.31 16 18 O -0.60 -26.36 16.24 -3.02 -0.05 -26.41 16 19 C -0.22 -6.79 6.19 -11.54 -0.07 -6.86 16 20 C -0.13 -3.02 10.24 30.61 0.31 -2.70 16 21 C -0.15 -3.81 10.05 30.61 0.31 -3.51 16 22 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 23 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.02 1.04 3.11 -2.39 -0.01 1.04 16 25 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.08 2.01 7.85 -2.39 -0.02 1.99 16 29 H 0.04 1.65 8.11 -2.39 -0.02 1.63 16 30 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.41 16.18 6.15 -92.71 -0.57 15.61 16 32 H 0.12 3.95 8.14 -2.38 -0.02 3.93 16 33 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.09 2.64 7.67 -2.39 -0.02 2.62 16 Total: -1.00 -68.02 288.44 2.67 -65.35 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.47 Total: 25.40 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 4.05 Total: 3.77 kcal Atomic # 7 Polarization: -111.97 SS G_CDS: -3.51 Total: -115.48 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.05 Total: -26.41 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.71 Total: 47.36 kcal Total: -68.02 2.67 -65.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027707406.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.655 kcal (2) G-P(sol) polarization free energy of solvation -68.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds