Wall clock time and date at job start Sun Mar 29 2020 22:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99720 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47225 * 299.99773 * 3 2 1 6 6 H 1.48497 * 109.47453 * 60.00264 * 3 2 1 7 7 C 1.38816 * 120.00387 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00115 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99650 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.65028 * 359.95445 * 9 7 2 11 11 C 1.54913 * 104.83350 * 204.16895 * 10 9 7 12 12 C 1.55152 * 101.57857 * 322.98925 * 11 10 9 13 13 H 1.09004 * 110.87417 * 277.06951 * 12 11 10 14 14 C 1.53000 * 110.72000 * 153.86527 * 12 11 10 15 15 N 1.46503 * 109.47372 * 180.02562 * 14 12 11 16 16 C 1.34778 * 120.00354 * 179.97438 * 15 14 12 17 17 O 1.21281 * 119.99300 * 0.02562 * 16 15 14 18 18 C 1.50690 * 120.00309 * 180.02562 * 16 15 14 19 19 C 1.53000 * 117.50063 * 180.02562 * 18 16 15 20 20 C 1.53002 * 60.02940 * 252.49714 * 19 18 16 21 21 C 1.47019 * 125.64776 * 179.97438 * 9 7 2 22 22 H 0.96999 * 120.00097 * 359.97438 * 1 2 3 23 23 H 1.08999 * 110.36941 * 323.00516 * 10 9 7 24 24 H 1.08999 * 110.36937 * 85.32900 * 10 9 7 25 25 H 1.09001 * 111.00190 * 204.91673 * 11 10 9 26 26 H 1.08993 * 111.00436 * 81.06347 * 11 10 9 27 27 H 1.09008 * 109.46786 * 60.02480 * 14 12 11 28 28 H 1.08994 * 109.47464 * 300.02232 * 14 12 11 29 29 H 0.96999 * 119.99938 * 0.02562 * 15 14 12 30 30 H 1.09007 * 115.55011 * 325.67113 * 18 16 15 31 31 H 1.09002 * 117.49833 * 359.97438 * 19 18 16 32 32 H 1.09002 * 117.49953 * 144.99860 * 19 18 16 33 33 H 1.09000 * 117.49996 * 107.50493 * 20 19 18 34 34 H 1.08999 * 117.49664 * 252.51862 * 20 19 18 35 35 H 1.08998 * 109.88218 * 59.48853 * 21 9 7 36 36 H 1.09004 * 110.01156 * 298.38848 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1414 -2.5332 0.0010 11 6 -0.4013 -3.9319 0.6139 12 6 0.7786 -4.7523 0.0291 13 1 0.5479 -5.1010 -0.9776 14 6 1.1236 -5.9306 0.9421 15 7 2.2393 -6.6849 0.3655 16 6 2.7178 -7.7725 1.0017 17 8 2.2243 -8.1269 2.0513 18 6 3.8658 -8.5480 0.4089 19 6 4.3630 -9.7732 1.1786 20 6 5.2075 -8.4978 1.1440 21 6 1.9319 -3.7274 0.0005 22 1 -0.4850 0.8400 0.0004 23 1 -0.5991 -1.7585 0.6161 24 1 -0.5274 -2.4875 -1.0174 25 1 -1.3588 -4.3326 0.2809 26 1 -0.3515 -3.8970 1.7021 27 1 0.2552 -6.5825 1.0378 28 1 1.4076 -5.5570 1.9259 29 1 2.6342 -6.4011 -0.4738 30 1 3.8894 -8.5942 -0.6799 31 1 3.8599 -10.0181 2.1141 32 1 4.7139 -10.6252 0.5963 33 1 5.2598 -7.9039 2.0565 34 1 6.1138 -8.5107 0.5386 35 1 2.5589 -3.8505 0.8836 36 1 2.5294 -3.8664 -0.9005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028356563.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:38 Heat of formation + Delta-G solvation = -14.952454 kcal Electronic energy + Delta-G solvation = -16786.369432 eV Core-core repulsion = 14077.811265 eV Total energy + Delta-G solvation = -2708.558167 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.01015 -39.36492 -37.13637 -35.98829 -34.30042 -31.67778 -29.97371 -27.54110 -26.01886 -24.07587 -23.27481 -22.14468 -21.34661 -20.71750 -18.93626 -18.34049 -17.31320 -16.78067 -16.60046 -16.17497 -15.65680 -15.34629 -15.03626 -14.31132 -14.27714 -13.57410 -13.51276 -13.36909 -13.14318 -12.81621 -12.70187 -12.42448 -11.98529 -11.94261 -11.83440 -11.60977 -11.51616 -11.42115 -11.36399 -10.87422 -10.75058 -10.10294 -8.88730 -7.78176 -5.22437 1.46560 1.47435 1.49294 1.57723 2.16614 2.49227 2.95774 3.31693 3.61023 3.72481 3.82283 3.91320 3.98355 4.01144 4.06096 4.26185 4.44211 4.63648 4.68715 4.76302 4.77364 4.90180 4.94844 5.04952 5.05943 5.11754 5.24840 5.34754 5.43665 5.48288 5.65186 5.82086 6.31268 6.55492 7.10761 7.23442 7.78525 8.41999 9.23999 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.038769 B = 0.004788 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.049177 B = 5845.955665 C = 6383.857871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.067 4.067 3 Si 0.980 3.020 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.080 0.920 9 N -0.629 5.629 10 C 0.152 3.848 11 C -0.123 4.123 12 C -0.093 4.093 13 H 0.098 0.902 14 C 0.143 3.857 15 N -0.713 5.713 16 C 0.533 3.467 17 O -0.592 6.592 18 C -0.200 4.200 19 C -0.148 4.148 20 C -0.147 4.147 21 C 0.138 3.862 22 H 0.247 0.753 23 H 0.071 0.929 24 H -0.008 1.008 25 H 0.090 0.910 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.415 0.585 30 H 0.154 0.846 31 H 0.084 0.916 32 H 0.130 0.870 33 H 0.082 0.918 34 H 0.132 0.868 35 H 0.019 0.981 36 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.049 -16.780 -1.979 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.808 3.192 4 H -0.191 1.191 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.098 0.902 9 N -0.355 5.355 10 C 0.027 3.973 11 C -0.162 4.162 12 C -0.112 4.112 13 H 0.116 0.884 14 C 0.019 3.981 15 N -0.364 5.364 16 C 0.322 3.678 17 O -0.473 6.473 18 C -0.221 4.221 19 C -0.186 4.186 20 C -0.184 4.184 21 C 0.013 3.987 22 H 0.057 0.943 23 H 0.089 0.911 24 H 0.010 0.990 25 H 0.108 0.892 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.251 0.749 30 H 0.171 0.829 31 H 0.103 0.897 32 H 0.148 0.852 33 H 0.101 0.899 34 H 0.150 0.850 35 H 0.037 0.963 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 6.674 -16.804 -1.249 18.124 hybrid contribution 0.214 1.457 -0.318 1.507 sum 6.888 -15.347 -1.567 16.894 Atomic orbital electron populations 1.70062 1.06219 1.24949 1.58661 1.25634 0.96642 1.00987 1.02713 0.84986 0.78096 0.79343 0.76759 1.19112 1.21794 1.21891 1.19501 0.91032 0.83884 1.42480 0.90197 1.44835 1.02840 1.01017 1.86813 1.21733 0.84089 0.94831 0.96665 1.22854 0.97871 0.95576 0.99933 1.22285 0.95743 0.93260 0.99946 0.88413 1.21191 0.89268 0.91766 0.95882 1.45923 1.35506 1.28003 1.26957 1.20341 0.83631 0.80204 0.83668 1.90663 1.61787 1.69756 1.25125 1.22303 0.94558 1.03790 1.01451 1.23013 1.01724 0.92004 1.01818 1.23045 0.93075 1.00568 1.01708 1.21487 0.94740 0.84669 0.97808 0.94340 0.91150 0.99038 0.89176 0.92081 0.90813 0.93271 0.74881 0.82865 0.89749 0.85173 0.89948 0.84957 0.96330 0.95151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.79 10.09 21.65 0.22 -56.57 16 2 C -0.07 -3.83 5.49 84.86 0.47 -3.37 16 3 Si 0.98 45.74 29.55 68.60 2.03 47.76 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 7 C -0.24 -13.53 10.27 84.04 0.86 -12.66 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 9 N -0.63 -32.38 3.39 -691.99 -2.35 -34.73 16 10 C 0.15 7.45 5.89 86.86 0.51 7.96 16 11 C -0.12 -4.46 6.53 31.99 0.21 -4.25 16 12 C -0.09 -2.93 3.02 -9.61 -0.03 -2.96 16 13 H 0.10 2.72 8.14 -2.38 -0.02 2.70 16 14 C 0.14 4.07 4.99 86.38 0.43 4.50 16 15 N -0.71 -17.35 5.40 -463.06 -2.50 -19.85 16 16 C 0.53 14.09 7.61 87.65 0.67 14.75 16 17 O -0.59 -20.81 16.26 -3.03 -0.05 -20.86 16 18 C -0.20 -3.53 6.19 -11.52 -0.07 -3.60 16 19 C -0.15 -2.39 10.04 30.60 0.31 -2.09 16 20 C -0.15 -2.27 10.24 30.62 0.31 -1.96 16 21 C 0.14 5.47 6.52 86.73 0.57 6.03 16 22 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 23 H 0.07 3.98 5.87 -2.39 -0.01 3.97 16 24 H -0.01 -0.44 8.14 -2.39 -0.02 -0.45 16 25 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 26 H 0.06 2.24 8.05 -2.39 -0.02 2.22 16 27 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 28 H 0.05 1.62 8.06 -2.39 -0.02 1.60 16 29 H 0.41 8.04 8.33 -92.71 -0.77 7.27 16 30 H 0.15 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.08 1.77 7.67 -2.39 -0.02 1.75 16 32 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.02 0.76 7.77 -2.39 -0.02 0.74 16 36 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -71.09 297.97 1.87 -69.22 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.29 Total: 12.65 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 4.23 Total: 2.36 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -4.63 Total: -111.15 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.05 Total: -20.86 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -71.09 1.87 -69.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028356563.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.269 kcal (2) G-P(sol) polarization free energy of solvation -71.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds