Wall clock time and date at job start Sun Mar 29 2020 22:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47510 * 2 1 4 4 O 1.21280 * 119.99354 * 0.27333 * 3 2 1 5 5 N 1.34774 * 120.00004 * 179.97438 * 3 2 1 6 6 C 1.47161 * 120.71150 * 359.72464 * 5 3 2 7 7 C 1.54319 * 107.80126 * 132.67856 * 6 5 3 8 8 H 1.08998 * 112.53087 * 182.37665 * 7 6 5 9 9 C 1.54546 * 107.98784 * 306.73784 * 7 6 5 10 10 C 1.55853 * 105.00017 * 89.00675 * 9 7 6 11 11 C 1.54550 * 104.09652 * 0.02562 * 10 9 7 12 12 H 1.08997 * 112.18755 * 146.81497 * 11 10 9 13 13 C 1.47163 * 120.70701 * 179.97438 * 5 3 2 14 14 N 1.48305 * 107.10336 * 58.61849 * 7 6 5 15 15 C 1.36937 * 128.07930 * 106.57069 * 14 7 6 16 16 H 1.07999 * 120.00423 * 164.94086 * 15 14 7 17 17 C 1.38818 * 119.99701 * 344.94565 * 15 14 7 18 18 N 1.31617 * 120.00114 * 350.60852 * 17 15 14 19 19 Si 1.86807 * 119.99815 * 170.61221 * 17 15 14 20 20 H 1.48500 * 109.46788 * 94.81397 * 19 17 15 21 21 H 1.48501 * 109.46773 * 214.81242 * 19 17 15 22 22 H 1.48492 * 109.47031 * 334.81174 * 19 17 15 23 23 H 1.09000 * 109.47332 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46962 * 299.99621 * 1 2 3 25 25 H 1.08991 * 109.47039 * 60.00065 * 1 2 3 26 26 H 1.09002 * 109.47024 * 239.99622 * 2 1 3 27 27 H 1.09008 * 109.47247 * 119.99952 * 2 1 3 28 28 H 1.08993 * 109.74677 * 252.38423 * 6 5 3 29 29 H 1.09003 * 109.74901 * 13.12205 * 6 5 3 30 30 H 1.08997 * 110.36863 * 207.85834 * 9 7 6 31 31 H 1.08996 * 110.36345 * 330.06350 * 9 7 6 32 32 H 1.08991 * 110.90452 * 241.33576 * 10 9 7 33 33 H 1.08997 * 110.55236 * 118.52178 * 10 9 7 34 34 H 1.09006 * 109.74923 * 346.88537 * 13 5 3 35 35 H 1.09002 * 109.74947 * 107.56405 * 13 5 3 36 36 H 0.97003 * 120.00161 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 0.0050 5 7 3.3575 1.6670 0.0005 6 6 4.3275 0.5604 0.0072 7 6 5.3889 0.8569 -1.0731 8 1 6.1274 0.0602 -1.1628 9 6 4.6524 1.1225 -2.4056 10 6 4.3656 2.6544 -2.4095 11 6 4.9624 3.1526 -1.0737 12 1 5.3635 4.1629 -1.1535 13 6 3.8652 3.0483 0.0000 14 7 6.0088 2.1596 -0.7295 15 6 7.2563 2.3916 -0.2147 16 1 7.6731 3.3877 -0.2370 17 6 7.9853 1.3464 0.3359 18 7 7.4137 0.1773 0.5327 19 14 9.7777 1.5993 0.7977 20 1 9.8724 1.9589 2.2354 21 1 10.5342 0.3457 0.5501 22 1 10.3511 2.6943 -0.0253 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 4.8024 0.4929 0.9859 29 1 3.8193 -0.3763 -0.2218 30 1 5.2875 0.8546 -3.2500 31 1 3.7187 0.5614 -2.4412 32 1 3.2937 2.8492 -2.4421 33 1 4.8651 3.1351 -3.2506 34 1 3.0546 3.7386 -0.2336 35 1 4.2824 3.2878 0.9781 36 1 7.9230 -0.5530 0.9177 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029177744.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:46 Heat of formation + Delta-G solvation = -7.280501 kcal Electronic energy + Delta-G solvation = -18256.814170 eV Core-core repulsion = 15548.588684 eV Total energy + Delta-G solvation = -2708.225486 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.95199 -37.79905 -33.66476 -32.72383 -32.19497 -30.45160 -29.22853 -26.40145 -24.50536 -23.69173 -22.92935 -19.75811 -19.48324 -18.41676 -17.08977 -15.99865 -15.60851 -15.15354 -14.54355 -14.44715 -13.75629 -13.10916 -13.01561 -12.87024 -12.65456 -12.20849 -11.75643 -11.64529 -11.52927 -11.48543 -11.07468 -10.94365 -10.87632 -10.77288 -10.32749 -10.06497 -9.86841 -9.62180 -9.58733 -9.27387 -8.77877 -8.02086 -6.85677 -5.88263 -3.22100 3.18090 3.33443 3.40261 3.41335 3.68667 4.39729 5.00436 5.17545 5.30021 5.31881 5.33305 5.63044 5.70721 5.76919 5.80541 5.93257 5.94199 6.05350 6.11858 6.16153 6.30591 6.35472 6.40236 6.52548 6.61092 6.65731 6.73253 6.88141 6.99606 7.25766 7.45484 7.63834 8.09555 8.15792 8.76464 9.02905 9.64837 10.41986 11.25355 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.036653 B = 0.007869 C = 0.007382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.741818 B = 3557.444255 C = 3792.011799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.143 4.143 3 C 0.504 3.496 4 O -0.569 6.569 5 N -0.593 5.593 6 C 0.103 3.897 7 C 0.167 3.833 8 H 0.119 0.881 9 C -0.134 4.134 10 C -0.124 4.124 11 C 0.133 3.867 12 H 0.076 0.924 13 C 0.102 3.898 14 N -0.585 5.585 15 C -0.223 4.223 16 H 0.077 0.923 17 C -0.004 4.004 18 N -0.916 5.916 19 Si 0.912 3.088 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.349 -1.523 -2.859 8.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.183 4.183 3 C 0.293 3.707 4 O -0.450 6.450 5 N -0.325 5.325 6 C -0.021 4.021 7 C 0.060 3.940 8 H 0.137 0.863 9 C -0.173 4.173 10 C -0.164 4.164 11 C 0.025 3.975 12 H 0.094 0.906 13 C -0.023 4.023 14 N -0.306 5.306 15 C -0.351 4.351 16 H 0.094 0.906 17 C -0.201 4.201 18 N -0.563 5.563 19 Si 0.743 3.257 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.206 1.206 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.483 -1.148 -2.730 8.048 hybrid contribution 1.015 -0.019 0.399 1.091 sum -6.468 -1.168 -2.331 6.974 Atomic orbital electron populations 1.21499 0.93697 1.00879 1.02954 1.21615 0.97767 0.94887 1.04017 1.20650 0.82161 0.91406 0.76511 1.90607 1.55259 1.46663 1.52434 1.48254 1.05194 1.08327 1.70675 1.22687 0.89829 0.86430 1.03126 1.21951 0.92194 0.91658 0.88230 0.86322 1.22894 0.99027 0.95479 0.99945 1.22739 0.99136 0.96560 0.97930 1.21958 0.88890 0.94647 0.92025 0.90572 1.22320 0.97054 0.82510 1.00401 1.45160 1.11738 1.00563 1.73124 1.19029 0.89375 0.95376 1.31355 0.90570 1.24814 0.98903 0.96563 0.99830 1.69820 1.35191 1.02549 1.48709 0.86105 0.84459 0.77026 0.78160 1.21643 1.21618 1.20619 0.92600 0.92322 0.92295 0.89268 0.89310 0.89982 0.92062 0.92761 0.93228 0.92587 0.92715 0.90847 0.92195 0.93559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 9.20 37.16 0.34 -1.35 16 2 C -0.14 -2.02 4.80 -27.88 -0.13 -2.15 16 3 C 0.50 9.28 7.70 -10.98 -0.08 9.20 16 4 O -0.57 -11.98 15.45 5.56 0.09 -11.90 16 5 N -0.59 -11.44 2.25 -171.27 -0.38 -11.82 16 6 C 0.10 2.04 5.74 -2.99 -0.02 2.02 16 7 C 0.17 3.61 3.13 -65.43 -0.20 3.41 16 8 H 0.12 2.89 6.37 -51.93 -0.33 2.56 16 9 C -0.13 -2.49 6.22 -24.40 -0.15 -2.65 16 10 C -0.12 -2.28 6.31 -24.39 -0.15 -2.43 16 11 C 0.13 2.70 4.27 -65.67 -0.28 2.42 16 12 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 13 C 0.10 2.03 5.88 -3.23 -0.02 2.01 16 14 N -0.58 -13.80 2.81 -152.36 -0.43 -14.23 16 15 C -0.22 -5.81 10.37 -15.06 -0.16 -5.96 16 16 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 17 C 0.00 -0.11 5.42 -17.43 -0.09 -0.21 16 18 N -0.92 -24.37 10.42 55.49 0.58 -23.79 16 19 Si 0.91 20.97 29.56 -169.99 -5.03 15.94 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 25 H 0.06 0.79 8.10 -51.93 -0.42 0.36 16 26 H 0.09 1.14 7.61 -51.93 -0.39 0.75 16 27 H 0.09 1.16 8.05 -51.92 -0.42 0.75 16 28 H 0.08 1.88 7.83 -51.93 -0.41 1.48 16 29 H 0.06 1.04 6.09 -51.93 -0.32 0.72 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.84 7.85 -51.93 -0.41 0.44 16 32 H 0.06 1.00 7.84 -51.93 -0.41 0.60 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.43 7.11 -51.93 -0.37 1.06 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 LS Contribution 282.66 15.07 4.26 4.26 Total: -1.00 -28.41 282.66 -7.42 -35.83 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.55 Total: 1.39 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -0.95 Total: 4.31 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: -0.23 Total: -49.84 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.09 Total: -11.90 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.41 -7.42 -35.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029177744.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.552 kcal (2) G-P(sol) polarization free energy of solvation -28.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds