Wall clock time and date at job start Sun Mar 29 2020 22:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47510 * 2 1 4 4 O 1.21280 * 119.99354 * 0.27333 * 3 2 1 5 5 N 1.34774 * 120.00004 * 179.97438 * 3 2 1 6 6 C 1.47161 * 120.71150 * 359.72464 * 5 3 2 7 7 C 1.54319 * 107.80126 * 132.67856 * 6 5 3 8 8 H 1.08998 * 112.53087 * 182.37665 * 7 6 5 9 9 C 1.54546 * 107.98784 * 306.73784 * 7 6 5 10 10 C 1.55853 * 105.00017 * 89.00675 * 9 7 6 11 11 C 1.54550 * 104.09652 * 0.02562 * 10 9 7 12 12 H 1.08997 * 112.18755 * 146.81497 * 11 10 9 13 13 C 1.47163 * 120.70701 * 179.97438 * 5 3 2 14 14 N 1.48305 * 107.10336 * 58.61849 * 7 6 5 15 15 C 1.36937 * 128.07930 * 106.57069 * 14 7 6 16 16 H 1.07999 * 120.00423 * 164.94086 * 15 14 7 17 17 C 1.38818 * 119.99701 * 344.94565 * 15 14 7 18 18 N 1.31617 * 120.00114 * 350.60852 * 17 15 14 19 19 Si 1.86807 * 119.99815 * 170.61221 * 17 15 14 20 20 H 1.48500 * 109.46788 * 94.81397 * 19 17 15 21 21 H 1.48501 * 109.46773 * 214.81242 * 19 17 15 22 22 H 1.48492 * 109.47031 * 334.81174 * 19 17 15 23 23 H 1.09000 * 109.47332 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46962 * 299.99621 * 1 2 3 25 25 H 1.08991 * 109.47039 * 60.00065 * 1 2 3 26 26 H 1.09002 * 109.47024 * 239.99622 * 2 1 3 27 27 H 1.09008 * 109.47247 * 119.99952 * 2 1 3 28 28 H 1.08993 * 109.74677 * 252.38423 * 6 5 3 29 29 H 1.09003 * 109.74901 * 13.12205 * 6 5 3 30 30 H 1.08997 * 110.36863 * 207.85834 * 9 7 6 31 31 H 1.08996 * 110.36345 * 330.06350 * 9 7 6 32 32 H 1.08991 * 110.90452 * 241.33576 * 10 9 7 33 33 H 1.08997 * 110.55236 * 118.52178 * 10 9 7 34 34 H 1.09006 * 109.74923 * 346.88537 * 13 5 3 35 35 H 1.09002 * 109.74947 * 107.56405 * 13 5 3 36 36 H 0.97003 * 120.00161 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 0.0050 5 7 3.3575 1.6670 0.0005 6 6 4.3275 0.5604 0.0072 7 6 5.3889 0.8569 -1.0731 8 1 6.1274 0.0602 -1.1628 9 6 4.6524 1.1225 -2.4056 10 6 4.3656 2.6544 -2.4095 11 6 4.9624 3.1526 -1.0737 12 1 5.3635 4.1629 -1.1535 13 6 3.8652 3.0483 0.0000 14 7 6.0088 2.1596 -0.7295 15 6 7.2563 2.3916 -0.2147 16 1 7.6731 3.3877 -0.2370 17 6 7.9853 1.3464 0.3359 18 7 7.4137 0.1773 0.5327 19 14 9.7777 1.5993 0.7977 20 1 9.8724 1.9589 2.2354 21 1 10.5342 0.3457 0.5501 22 1 10.3511 2.6943 -0.0253 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 4.8024 0.4929 0.9859 29 1 3.8193 -0.3763 -0.2218 30 1 5.2875 0.8546 -3.2500 31 1 3.7187 0.5614 -2.4412 32 1 3.2937 2.8492 -2.4421 33 1 4.8651 3.1351 -3.2506 34 1 3.0546 3.7386 -0.2336 35 1 4.2824 3.2878 0.9781 36 1 7.9230 -0.5530 0.9177 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029177744.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:46 Heat of formation + Delta-G solvation = -23.097064 kcal Electronic energy + Delta-G solvation = -18257.500027 eV Core-core repulsion = 15548.588684 eV Total energy + Delta-G solvation = -2708.911343 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.50748 -39.36267 -35.35443 -34.31094 -33.58870 -32.02648 -31.00477 -27.98362 -26.04681 -25.39249 -24.32050 -21.38158 -21.01849 -20.07771 -18.62761 -17.68063 -17.08908 -16.79614 -16.27884 -15.81491 -15.48240 -14.70081 -14.58343 -14.37387 -14.11503 -13.58629 -13.43527 -13.21527 -12.97327 -12.83742 -12.74081 -12.55073 -12.48483 -12.02109 -11.94026 -11.79644 -11.48310 -11.42959 -11.14695 -10.89381 -10.54366 -9.68839 -8.68627 -7.85222 -5.19206 1.49255 1.51329 1.59097 1.73598 2.19664 2.51991 3.34349 3.50495 3.69629 4.07736 4.13061 4.22192 4.24701 4.27712 4.36537 4.47831 4.53429 4.72378 4.76934 4.80974 4.99179 5.01675 5.03669 5.07623 5.10750 5.16809 5.32847 5.36193 5.41319 5.55484 5.63496 5.85370 6.24791 6.64597 7.09461 7.28372 7.72867 8.52646 9.26551 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.036653 B = 0.007869 C = 0.007382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.741818 B = 3557.444255 C = 3792.011799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.139 4.139 3 C 0.501 3.499 4 O -0.596 6.596 5 N -0.596 5.596 6 C 0.117 3.883 7 C 0.162 3.838 8 H 0.089 0.911 9 C -0.125 4.125 10 C -0.114 4.114 11 C 0.129 3.871 12 H 0.079 0.921 13 C 0.107 3.893 14 N -0.605 5.605 15 C -0.236 4.236 16 H 0.073 0.927 17 C -0.050 4.050 18 N -0.932 5.932 19 Si 0.969 3.031 20 H -0.293 1.293 21 H -0.293 1.293 22 H -0.275 1.275 23 H 0.087 0.913 24 H 0.045 0.955 25 H 0.050 0.950 26 H 0.111 0.889 27 H 0.102 0.898 28 H 0.045 0.955 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.037 0.963 36 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.284 -2.230 -3.731 9.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.179 4.179 3 C 0.291 3.709 4 O -0.479 6.479 5 N -0.327 5.327 6 C -0.007 4.007 7 C 0.054 3.946 8 H 0.107 0.893 9 C -0.164 4.164 10 C -0.153 4.153 11 C 0.021 3.979 12 H 0.097 0.903 13 C -0.018 4.018 14 N -0.327 5.327 15 C -0.365 4.365 16 H 0.090 0.910 17 C -0.245 4.245 18 N -0.579 5.579 19 Si 0.799 3.201 20 H -0.220 1.220 21 H -0.219 1.219 22 H -0.200 1.200 23 H 0.106 0.894 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.129 0.871 27 H 0.121 0.879 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.441 -1.851 -3.615 9.367 hybrid contribution 1.268 0.241 0.691 1.464 sum -7.172 -1.610 -2.924 7.911 Atomic orbital electron populations 1.21496 0.92548 1.02652 1.01940 1.21713 0.98691 0.91805 1.05657 1.21453 0.81238 0.93071 0.75116 1.90596 1.55680 1.48135 1.53488 1.48287 1.05709 1.07693 1.71026 1.22404 0.89746 0.87913 1.00590 1.21924 0.92131 0.90108 0.90392 0.89283 1.22805 0.99628 0.95885 0.98086 1.22645 0.99465 0.96289 0.96853 1.22111 0.88256 0.94378 0.93164 0.90298 1.22144 0.97026 0.83477 0.99157 1.45350 1.11839 1.02234 1.73277 1.19255 0.90724 0.95308 1.31226 0.90960 1.25446 1.01937 0.96638 1.00449 1.69967 1.35868 1.02795 1.49298 0.85216 0.80778 0.76691 0.77438 1.22037 1.21926 1.20047 0.89413 0.93599 0.93096 0.87074 0.87931 0.93674 0.88712 0.92358 0.91047 0.91802 0.91581 0.90321 0.94432 0.94106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 9.20 71.98 0.66 -2.22 16 2 C -0.14 -3.48 4.80 29.85 0.14 -3.33 16 3 C 0.50 17.44 7.70 87.66 0.68 18.12 16 4 O -0.60 -24.30 15.45 -3.03 -0.05 -24.35 16 5 N -0.60 -22.27 2.25 -814.17 -1.83 -24.10 16 6 C 0.12 4.53 5.74 86.70 0.50 5.03 16 7 C 0.16 6.88 3.13 45.62 0.14 7.02 16 8 H 0.09 4.35 6.37 -2.39 -0.02 4.34 16 9 C -0.13 -4.36 6.22 32.11 0.20 -4.16 16 10 C -0.11 -3.91 6.31 32.11 0.20 -3.70 16 11 C 0.13 5.12 4.27 45.47 0.19 5.32 16 12 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 13 C 0.11 4.24 5.88 86.55 0.51 4.75 16 14 N -0.61 -28.61 2.81 -635.94 -1.79 -30.39 16 15 C -0.24 -12.41 10.37 84.03 0.87 -11.54 16 16 H 0.07 3.74 7.85 -2.91 -0.02 3.72 16 17 C -0.05 -2.64 5.42 84.86 0.46 -2.18 16 18 N -0.93 -50.25 10.42 21.65 0.23 -50.03 16 19 Si 0.97 43.51 29.56 68.60 2.03 45.54 16 20 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 22 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 23 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.04 1.14 8.10 -2.38 -0.02 1.12 16 25 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16 26 H 0.11 2.34 7.61 -2.39 -0.02 2.32 16 27 H 0.10 2.34 8.05 -2.38 -0.02 2.32 16 28 H 0.04 2.09 7.83 -2.39 -0.02 2.07 16 29 H 0.09 2.97 6.09 -2.39 -0.01 2.96 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 2.17 7.85 -2.39 -0.02 2.15 16 32 H 0.06 2.11 7.84 -2.39 -0.02 2.09 16 33 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.08 3.02 7.11 -2.38 -0.02 3.00 16 35 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.25 13.20 8.31 -92.71 -0.77 12.43 16 Total: -1.00 -60.88 282.66 4.20 -56.68 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 1.05 Total: 13.54 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: 4.56 Total: 13.10 kcal Atomic # 7 Polarization: -101.13 SS G_CDS: -3.39 Total: -104.52 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.05 Total: -24.35 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -60.88 4.20 -56.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029177744.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.585 kcal (2) G-P(sol) polarization free energy of solvation -60.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds