Wall clock time and date at job start Sun Mar 29 2020 22:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53783 * 113.61558 * 2 1 4 4 C 1.53957 * 87.02186 * 220.04531 * 3 2 1 5 5 C 1.50693 * 113.66784 * 139.92946 * 4 3 2 6 6 O 1.21287 * 120.00272 * 262.44715 * 5 4 3 7 7 N 1.34780 * 120.00156 * 82.44154 * 5 4 3 8 8 C 1.46497 * 119.99960 * 180.02562 * 7 5 4 9 9 C 1.53949 * 113.74041 * 253.74079 * 8 7 5 10 10 N 1.47818 * 86.03590 * 222.08940 * 9 8 7 11 11 C 1.36936 * 134.45301 * 204.64793 * 10 9 8 12 12 H 1.08004 * 119.99894 * 179.86406 * 11 10 9 13 13 C 1.38812 * 120.00203 * 359.86382 * 11 10 9 14 14 N 1.31620 * 120.00061 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99927 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47364 * 59.99781 * 15 13 11 17 17 H 1.48508 * 109.47206 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47129 * 299.99420 * 15 13 11 19 19 C 1.47574 * 91.05026 * 24.54971 * 10 9 8 20 20 C 1.53778 * 113.61679 * 262.39202 * 2 1 3 21 21 H 1.09002 * 109.47153 * 159.13711 * 1 2 3 22 22 H 1.09001 * 109.46832 * 39.13902 * 1 2 3 23 23 H 1.09004 * 109.47261 * 279.13883 * 1 2 3 24 24 H 1.09007 * 112.85239 * 131.19311 * 2 1 3 25 25 H 1.09000 * 113.61048 * 334.56744 * 3 2 1 26 26 H 1.09003 * 113.61260 * 105.46712 * 3 2 1 27 27 H 1.09000 * 113.53827 * 270.81220 * 4 3 2 28 28 H 0.96998 * 119.99390 * 0.02562 * 7 5 4 29 29 H 1.08992 * 112.94827 * 25.33112 * 8 7 5 30 30 H 1.08999 * 113.76850 * 336.35019 * 9 8 7 31 31 H 1.09001 * 113.76773 * 107.74893 * 9 8 7 32 32 H 0.97003 * 120.00307 * 180.02562 * 14 13 11 33 33 H 1.09009 * 113.76764 * 221.15258 * 19 10 9 34 34 H 1.09003 * 113.76954 * 89.75918 * 19 10 9 35 35 H 1.09006 * 113.61506 * 254.52982 * 20 2 1 36 36 H 1.08996 * 113.61642 * 25.43366 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 3.1924 0.8642 -0.9892 5 6 3.5408 1.8288 -2.0933 6 8 3.0072 1.7276 -3.1778 7 7 4.4454 2.8040 -1.8758 8 6 4.7837 3.7420 -2.9490 9 6 6.1694 3.4963 -3.5730 10 7 6.3267 4.9659 -3.5502 11 6 7.0733 5.8618 -4.2680 12 1 7.0051 6.9176 -4.0513 13 6 7.9176 5.4128 -5.2742 14 7 8.0003 4.1261 -5.5386 15 14 8.9365 6.6349 -6.2529 16 1 9.8364 7.3772 -5.3340 17 1 9.7486 5.9071 -7.2610 18 1 8.0342 7.5918 -6.9423 19 6 5.3548 5.0800 -2.4456 20 6 2.1460 -0.1865 -1.3966 21 1 -0.3633 -0.9603 -0.3660 22 1 -0.3633 0.7971 -0.6487 23 1 -0.3634 0.1632 1.0147 24 1 1.9533 -0.6616 0.7559 25 1 1.4945 2.1704 -0.4289 26 1 2.5650 1.7024 0.9626 27 1 4.0711 0.4399 -0.5035 28 1 4.8723 2.8847 -1.0086 29 1 3.9856 3.8538 -3.6829 30 1 6.8607 2.9703 -2.9145 31 1 6.1305 3.0729 -4.5766 32 1 8.5907 3.8124 -6.2415 33 1 4.6665 5.9188 -2.5508 34 1 5.8062 5.0202 -1.4552 35 1 2.5651 -1.1795 -1.5599 36 1 1.4946 0.1378 -2.2081 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030204151.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:38 Heat of formation + Delta-G solvation = 28.765884 kcal Electronic energy + Delta-G solvation = -16781.317435 eV Core-core repulsion = 14074.655037 eV Total energy + Delta-G solvation = -2706.662397 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.20113 -38.35701 -36.96790 -33.43822 -31.80571 -30.14405 -27.49456 -25.74045 -24.82789 -24.72144 -22.59306 -20.15387 -19.67581 -19.16532 -16.86085 -16.77021 -15.74817 -15.68107 -14.93162 -14.42189 -14.06632 -13.84726 -13.53127 -13.10836 -12.59222 -12.55271 -12.23670 -11.91516 -11.48576 -11.43744 -11.31202 -10.94322 -10.86259 -10.75358 -10.58990 -10.42743 -10.31971 -10.04392 -9.53959 -9.28384 -8.80171 -8.38575 -6.91476 -5.76612 -3.10807 2.95430 3.40048 3.43470 3.45839 3.59671 4.38641 4.45634 4.50312 4.65804 4.69529 5.09526 5.22073 5.30480 5.41194 5.49260 5.56476 5.58226 5.62029 5.65934 5.73667 5.90658 5.97455 6.03912 6.14125 6.22952 6.39925 6.43988 6.57951 6.81716 7.24572 7.38772 7.56923 7.94905 7.97812 8.63575 9.03122 9.69586 10.56563 11.40023 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.072778 B = 0.004322 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.637045 B = 6477.226866 C = 6647.484947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.118 4.118 4 C -0.140 4.140 5 C 0.519 3.481 6 O -0.544 6.544 7 N -0.715 5.715 8 C 0.091 3.909 9 C 0.154 3.846 10 N -0.607 5.607 11 C -0.227 4.227 12 H 0.081 0.919 13 C -0.006 4.006 14 N -0.919 5.919 15 Si 0.915 3.085 16 H -0.285 1.285 17 H -0.289 1.289 18 H -0.283 1.283 19 C 0.113 3.887 20 C -0.113 4.113 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.110 0.890 28 H 0.396 0.604 29 H 0.109 0.891 30 H 0.028 0.972 31 H 0.076 0.924 32 H 0.255 0.745 33 H 0.048 0.952 34 H 0.035 0.965 35 H 0.069 0.931 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.222 -7.417 13.164 18.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.135 4.135 3 C -0.156 4.156 4 C -0.161 4.161 5 C 0.305 3.695 6 O -0.422 6.422 7 N -0.365 5.365 8 C -0.014 4.014 9 C 0.028 3.972 10 N -0.334 5.334 11 C -0.355 4.355 12 H 0.099 0.901 13 C -0.203 4.203 14 N -0.565 5.565 15 Si 0.745 3.255 16 H -0.211 1.211 17 H -0.215 1.215 18 H -0.210 1.210 19 C -0.014 4.014 20 C -0.151 4.151 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.108 0.892 25 H 0.104 0.896 26 H 0.091 0.909 27 H 0.128 0.872 28 H 0.229 0.771 29 H 0.127 0.873 30 H 0.046 0.954 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.360 -7.373 12.096 18.159 hybrid contribution 1.107 0.673 -0.016 1.295 sum -10.254 -6.699 12.080 17.203 Atomic orbital electron populations 1.21715 0.94722 1.01943 1.01532 1.22481 0.95816 0.97181 0.98032 1.22968 0.97011 0.97164 0.98482 1.22775 0.99137 0.97530 0.96674 1.20420 0.78782 0.81468 0.88865 1.90680 1.52929 1.72727 1.25845 1.46164 1.42608 1.31565 1.16139 1.23863 0.99024 0.88783 0.89748 1.22708 0.88940 0.86020 0.99560 1.45716 1.49020 1.02954 1.35723 1.18945 1.17431 0.88160 1.10938 0.90110 1.24821 0.99924 0.96238 0.99313 1.69824 1.41062 1.12090 1.33543 0.86165 0.79889 0.79882 0.79586 1.21145 1.21503 1.20974 1.22866 0.91408 0.94726 0.92440 1.22892 0.96961 0.98069 0.97187 0.92523 0.92441 0.92781 0.89214 0.89631 0.90868 0.87211 0.77071 0.87331 0.95421 0.90561 0.93480 0.93334 0.94767 0.91234 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.70 37.16 0.36 -0.77 16 2 C -0.12 -1.00 4.35 -89.81 -0.39 -1.39 16 3 C -0.12 -1.11 7.20 -25.83 -0.19 -1.29 16 4 C -0.14 -1.59 4.15 -90.87 -0.38 -1.96 16 5 C 0.52 8.30 7.36 -10.99 -0.08 8.22 16 6 O -0.54 -11.08 15.52 5.55 0.09 -10.99 16 7 N -0.71 -11.25 5.37 -55.34 -0.30 -11.55 16 8 C 0.09 1.82 4.40 -70.14 -0.31 1.51 16 9 C 0.15 3.78 7.33 -2.83 -0.02 3.76 16 10 N -0.61 -15.90 3.70 -177.86 -0.66 -16.56 16 11 C -0.23 -6.48 10.70 -15.06 -0.16 -6.64 16 12 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 13 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 14 N -0.92 -27.87 11.39 55.49 0.63 -27.24 16 15 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 C 0.11 2.29 8.69 -2.97 -0.03 2.26 16 20 C -0.11 -1.24 6.97 -25.92 -0.18 -1.42 16 21 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.06 0.50 7.98 -51.93 -0.41 0.08 16 23 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.09 0.89 7.94 -51.93 -0.41 0.48 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.40 5.03 8.71 -40.82 -0.36 4.67 16 29 H 0.11 2.38 7.51 -51.93 -0.39 1.99 16 30 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 2.13 7.16 -51.93 -0.37 1.76 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 34 H 0.03 0.64 8.11 -51.93 -0.42 0.22 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 1.24 7.39 -51.93 -0.38 0.85 16 LS Contribution 299.28 15.07 4.51 4.51 Total: -1.00 -33.13 299.28 -7.90 -41.02 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.68 Total: 1.46 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -1.47 Total: 2.00 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -0.32 Total: -55.35 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.13 -7.90 -41.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030204151.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.787 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds